Rorug03G0175400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009232
Physical Location & Seq
Forward (+)
14851128 .. 14852600
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0175400.1

Sequence Viewer

Length: 1362 bp
ATGGCTTCAGAGTCCCATGATCAGCTTCACTTTGTTTTGATACCACTAATGTCTCCAGGCCACCTTCTACCAATGGCAGACATGGCTAAGCTATTGGCACAGCATGGTCTGGTGGTCACAATTATCACCACACCTCTCAATGCTGTTGGAATCAAACCTGTCATTGATCGTGCCATTGATTCCGGTCTCTCCCTTCATCTAGTCCAGTTCAATTTGCCACTTGCTGAGTGTGGTTTGCCAGATGGATGTGAAAACTTGGAATCAGTCCCTGCAAGAAACTTGTTTTGTAATTTCTTTGATGCAGTTAGCAGGCTTCAGAAGCCAGTAGAGAAATTGCTTGATACACTGAAACCCCATCCGAGCTGCATAATCTCAGATAAACATCTGCCGTGGACAGCTGAGATTGCTCAAAAGTTTGGGTTACCAAGGTATTGGTTTGATGGGACTAGTTGCTTTACTCTCTTGTCTAACCATAATATAGAAACATCCAAGGTCCTAGAGAGTGTTTCAGGATCAGAATCATTTCTGGTGCCTGGTTTGCCTGATGAGATTGAGCTTACTTTAGCCCAATTACCGGCGCACTTGAATCCTGCTAATGTTGACTTCAGAGATTTCCACAGAAAAGTAGAGGAAGCTACAAAAGGATCATGTGGAGTTGTTGTGAATAGCTTTGAGCAGTTGGAAACAGAGTATGTCAAAGAGTATAGAAAGCTCGATTCATGGCCTGAGAGCTCAGTTGTATATGTATGTCTCGGAAGCCTCGGCCGTGTCTCAACTCCTCAGTTGGTAGAGCTTGGATTAGGATTAGAAGCATCAAACCGGCCTTTTGTTTGGGTGATCCGCAGAAAGAAAACAGAAGAATGGGCAAAATGGTTGTTGGAAGATGGATTTGAGGACCGGATTAAAGGTAGAGGACTATTAATCCATGGTTGGGCACCACAAGTATTGATATTGTCACATCCTGCAGTTGGTGGGTTTTTAACACATTGTGGTTGGAATTCGACGTTGGAAGGGATTTGTGCTGGGATTCCAATGATCACATTTCCTATGTTTGCTGAGCAGTTCTACAATGAGAAGTTCATAGTGCATGTCTTGAAGATTGGTGTGAGAGTTGGTGCCTTAGTGGTCATTCCGTTGGGAAAACAAGAAGGGTCTGTGGTGTCAGTGAAAAGTTGCGAGTTTAAGGAGGCTATAGAGAAAGTGATGATCACATGTACTGAAGGGAATAAAGAAGAAGAAGAAAGAAGAGAGAGAGCAAAGAAGCTTGCAGTGATGGCCAAGAAAGCTACAGAGGAGGGAGGTTCTTCTTACCTTAATATTAGACTGTTAATTGAAGATGTAAGAACATACAAACATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_8 NB-ARC

Protein Analysis

453

Amino Acids

50.46

Weight (kDa)

5.96

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 240 - 364 1.5e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 529, 934, 1115
AciI CCGC 1 cut(s) 841
AclWI GGATC 3 cut(s) 520, 652, 832
AcoI YGGCCR 2 cut(s) 763, 1275
AcsI RAATTY 1 cut(s) 997
AcuI CTGAAG 3 cut(s) 299, 589, 1239
AdeI CACNNNGTG 1 cut(s) 989
AfaI GTAC 1 cut(s) 1216
AfiI CCNNNNNNNGG 3 cut(s) 574, 931, 968
AflIII ACRYGT 1 cut(s) 1211
AgsI TTSAA 4 cut(s) 211, 586, 1096, 1334
AhlI ACTAGT 1 cut(s) 446
AjnI CCWGG 2 cut(s) 55, 532
AjuI GAANNNNNNNTTGG 2 cut(s) 989, 1021
Alw21I GWGCWC 1 cut(s) 734
Alw26I GTCTC 4 cut(s) 57, 191, 755, 775
AlwI GGATC 3 cut(s) 520, 652, 832
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 5 cut(s) 58, 722, 763, 821, 1275
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 997
AseI ATTAAT 1 cut(s) 920
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 2 cut(s) 493, 895
AsuHPI GGTGA 2 cut(s) 118, 847
AvaII GGWCC 2 cut(s) 493, 895
BaeGI GKGCMC 1 cut(s) 937
BalI TGGCCA 1 cut(s) 1277
BanI GGYRCC 3 cut(s) 529, 934, 1115
BanII GRGCYC 1 cut(s) 734
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 1 cut(s) 350
BccI CCATC 5 cut(s) 236, 363, 434, 878, 1267
BceAI ACGGC 2 cut(s) 373, 750
BciT130I CCWGG 2 cut(s) 57, 534
BclI TGATCA 3 cut(s) 19, 1035, 1206
BcoDI GTCTC 4 cut(s) 57, 191, 755, 775
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 3 cut(s) 200, 447, 497
BfmI CTRYAG 3 cut(s) 963, 1191, 1287
BisI GCNGC 1 cut(s) 364
BlpI GCTNAGC 2 cut(s) 87, 1056
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 2 cut(s) 57, 534
Bme18I GGWCC 2 cut(s) 493, 895
BmgT120I GGNCC 2 cut(s) 493, 895
BmiI GGNNCC 3 cut(s) 531, 936, 1117
BmrFI CCNGG 2 cut(s) 57, 534
BmsI GCATC 2 cut(s) 289, 821
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 2 cut(s) 87, 1056
BsaBI GATNNNNATC 2 cut(s) 381, 517
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 5 cut(s) 389, 425, 489, 760, 925
BsaWI WCCGGW 2 cut(s) 182, 897
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bsc4I CCNNNNNNNGG 3 cut(s) 574, 931, 968
Bse118I RCCGGY 2 cut(s) 574, 819
Bse1I ACTGG 2 cut(s) 205, 323
Bse8I GATNNNNATC 2 cut(s) 381, 517
BseBI CCWGG 2 cut(s) 57, 534
BseDI CCNNGG 5 cut(s) 389, 425, 489, 760, 925
BseGI GGATG 4 cut(s) 251, 355, 485, 958
BseJI GATNNNNATC 2 cut(s) 381, 517
BseLI CCNNNNNNNGG 3 cut(s) 574, 931, 968
BseMII CTCAG 7 cut(s) 216, 387, 390, 717, 747, 794, 1047
BseNI ACTGG 2 cut(s) 205, 323
BseRI GAGGAG 2 cut(s) 768, 1307
BseSI GKGCMC 1 cut(s) 937
BseX3I CGGCCG 1 cut(s) 763
BseXI GCAGC 1 cut(s) 350
BseYI CCCAGC 1 cut(s) 1022
Bsh1285I CGRYCG 1 cut(s) 766
BshFI GGCC 5 cut(s) 60, 724, 765, 823, 1277
BshNI GGYRCC 3 cut(s) 529, 934, 1115
BsiEI CGRYCG 1 cut(s) 766
BsiHKAI GWGCWC 1 cut(s) 734
BsiSI CCGG 4 cut(s) 183, 575, 820, 898
BslFI GGGAC 2 cut(s) 251, 457
BslI CCNNNNNNNGG 3 cut(s) 574, 931, 968
BsmAI GTCTC 4 cut(s) 57, 191, 755, 775
BsmFI GGGAC 2 cut(s) 251, 457
BsnI GGCC 5 cut(s) 60, 724, 765, 823, 1277
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 734, 937
Bsp143I GATC 7 cut(s) 19, 166, 512, 644, 837, 1035, 1206
Bsp1720I GCTNAGC 2 cut(s) 87, 1056
Bsp19I CCATGG 1 cut(s) 925
BspACI CCGC 1 cut(s) 841
BspANI GGCC 5 cut(s) 60, 724, 765, 823, 1277
BspCNI CTCAG 7 cut(s) 217, 386, 391, 718, 746, 793, 1048
BspLI GGNNCC 3 cut(s) 531, 936, 1117
BspMAI CTGCAG 1 cut(s) 967
BspPI GGATC 3 cut(s) 520, 652, 832
BspT107I GGYRCC 3 cut(s) 529, 934, 1115
BspTNI GGTCTC 1 cut(s) 191
BsrFI RCCGGY 2 cut(s) 574, 819
BsrI ACTGG 2 cut(s) 205, 323
BssAI RCCGGY 2 cut(s) 574, 819
BssECI CCNNGG 5 cut(s) 389, 425, 489, 760, 925
BssMI GATC 7 cut(s) 19, 166, 512, 644, 837, 1035, 1206
BssT1I CCWWGG 3 cut(s) 425, 489, 925
Bst2UI CCWGG 2 cut(s) 57, 534
Bst4CI ACNGT 1 cut(s) 1326
Bst6I CTCTTC 1 cut(s) 1240
BstC8I GCNNGC 2 cut(s) 311, 1266
BstDEI CTNAG 9 cut(s) 87, 225, 373, 399, 726, 733, 780, 1056, 1120
BstDSI CCRYGG 2 cut(s) 389, 925
BstEII GGTNACC 1 cut(s) 420
BstF5I GGATG 4 cut(s) 251, 355, 485, 958
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 7 cut(s) 22, 169, 515, 647, 840, 1038, 1209
BstMAI GTCTC 4 cut(s) 57, 191, 755, 775
BstMBI GATC 7 cut(s) 19, 166, 512, 644, 837, 1035, 1206
BstMCI CGRYCG 1 cut(s) 766
BstMWI GCNNNNNNNGC 6 cut(s) 83, 319, 404, 538, 1274, 1283
BstNI CCWGG 2 cut(s) 57, 534
BstNSI RCATGY 2 cut(s) 1091, 1215
BstPI GGTNACC 1 cut(s) 420
BstSCI CCNGG 2 cut(s) 55, 532
BstSFI CTRYAG 3 cut(s) 963, 1191, 1287
BstSLI GKGCMC 1 cut(s) 937
BstV1I GCAGC 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 432
BstZI CGGCCG 1 cut(s) 763
BsuRI GGCC 5 cut(s) 60, 724, 765, 823, 1277
BtgI CCRYGG 2 cut(s) 389, 925
BtsCI GGATG 4 cut(s) 251, 355, 485, 958
BtsI GCAGTG 1 cut(s) 1275
BtsIMutI CAGTG 3 cut(s) 344, 1170, 1275
Cac8I GCNNGC 2 cut(s) 311, 1266
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 1 cut(s) 580
Cfr10I RCCGGY 2 cut(s) 574, 819
Cfr13I GGNCC 2 cut(s) 493, 895
Csp6I GTAC 1 cut(s) 1215
CspCI CAANNNNNGTGG 2 cut(s) 927, 962
CviAII CATG 8 cut(s) 17, 82, 104, 648, 720, 926, 1088, 1212
CviQI GTAC 1 cut(s) 1215
DdeI CTNAG 9 cut(s) 87, 225, 373, 399, 726, 733, 780, 1056, 1120
DpnI GATC 7 cut(s) 21, 168, 514, 646, 839, 1037, 1208
DpnII GATC 7 cut(s) 19, 166, 512, 644, 837, 1035, 1206
DraIII CACNNNGTG 1 cut(s) 989
EaeI YGGCCR 2 cut(s) 763, 1275
EagI CGGCCG 1 cut(s) 763
Eam1104I CTCTTC 1 cut(s) 1240
EarI CTCTTC 1 cut(s) 1240
Ecl136II GAGCTC 1 cut(s) 732
EclXI CGGCCG 1 cut(s) 763
Eco130I CCWWGG 3 cut(s) 425, 489, 925
Eco24I GRGCYC 1 cut(s) 734
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 493, 895
Eco52I CGGCCG 1 cut(s) 763
Eco53kI GAGCTC 1 cut(s) 732
Eco57I CTGAAG 3 cut(s) 299, 589, 1239
Eco91I GGTNACC 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 732
EcoO109I RGGNCCY 1 cut(s) 493
EcoO65I GGTNACC 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 997
EcoRII CCWGG 2 cut(s) 55, 532
EcoT14I CCWWGG 3 cut(s) 425, 489, 925
EcoT38I GRGCYC 1 cut(s) 734
ErhI CCWWGG 3 cut(s) 425, 489, 925
FaeI CATG 8 cut(s) 20, 85, 107, 651, 723, 929, 1091, 1215
FaqI GGGAC 2 cut(s) 251, 457
FatI CATG 8 cut(s) 16, 81, 103, 647, 719, 925, 1087, 1211
FbaI TGATCA 3 cut(s) 19, 1035, 1206
Fnu4HI GCNGC 1 cut(s) 364
FokI GGATG 4 cut(s) 258, 342, 472, 945
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 3 cut(s) 200, 447, 497
GlaI GCGC 1 cut(s) 579
GluI GCNGC 1 cut(s) 364
GsaI CCCAGC 1 cut(s) 1026
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 5 cut(s) 60, 724, 765, 823, 1277
HapII CCGG 4 cut(s) 183, 575, 820, 898
HhaI GCGC 1 cut(s) 580
Hin1II CATG 8 cut(s) 20, 85, 107, 651, 723, 929, 1091, 1215
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HindIII AAGCTT 1 cut(s) 1262
HinfI GANTC 8 cut(s) 11, 150, 179, 260, 518, 586, 716, 1027
HpaII CCGG 4 cut(s) 183, 575, 820, 898
HphI GGTGA 2 cut(s) 118, 847
Hpy166II GTNNAC 2 cut(s) 393, 601
Hpy188I TCNGA 7 cut(s) 10, 318, 360, 376, 517, 608, 755
Hpy188III TCNNGA 2 cut(s) 510, 1093
Hpy8I GTNNAC 2 cut(s) 393, 601
Hpy99I CGWCG 1 cut(s) 1006
HpyAV CCTTC 5 cut(s) 74, 203, 1004, 1142, 1214
HpyCH4III ACNGT 1 cut(s) 1326
HpyCH4IV ACGT 1 cut(s) 1004
HpyCH4V TGCA 6 cut(s) 272, 302, 366, 965, 1087, 1268
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 319, 404, 538, 1274, 1283
HpyF3I CTNAG 9 cut(s) 87, 225, 373, 399, 726, 733, 780, 1056, 1120
HpySE526I ACGT 1 cut(s) 1004
Hsp92II CATG 8 cut(s) 20, 85, 107, 651, 723, 929, 1091, 1215
HspAI GCGC 1 cut(s) 578
Ksp22I TGATCA 3 cut(s) 19, 1035, 1206
Kzo9I GATC 7 cut(s) 19, 166, 512, 644, 837, 1035, 1206
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 2 cut(s) 289, 821
MaeI CTAG 3 cut(s) 200, 447, 497
MaeII ACGT 1 cut(s) 1004
MaeIII GTNAC 3 cut(s) 115, 420, 954
MalI GATC 7 cut(s) 21, 168, 514, 646, 839, 1037, 1208
MboI GATC 7 cut(s) 19, 166, 512, 644, 837, 1035, 1206
MboII GAAGA 9 cut(s) 869, 893, 1108, 1244, 1247, 1250, 1257, 1296, 1346
MhlI GDGCHC 2 cut(s) 734, 937
MlsI TGGCCA 1 cut(s) 1277
MluCI AATT 7 cut(s) 120, 211, 289, 332, 569, 997, 1329
MluNI TGGCCA 1 cut(s) 1277
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 5 cut(s) 127, 660, 858, 974, 987
Mox20I TGGCCA 1 cut(s) 1277
MroXI GAANNNNTTC 1 cut(s) 522
MscI TGGCCA 1 cut(s) 1277
MseI TTAA 6 cut(s) 903, 920, 980, 1182, 1314, 1328
Msp20I TGGCCA 1 cut(s) 1277
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 4 cut(s) 183, 575, 820, 898
MspR9I CCNGG 2 cut(s) 57, 534
MvaI CCWGG 2 cut(s) 57, 534
MwoI GCNNNNNNNGC 6 cut(s) 83, 319, 404, 538, 1274, 1283
NcoI CCATGG 1 cut(s) 925
NdeII GATC 7 cut(s) 19, 166, 512, 644, 837, 1035, 1206
NlaIII CATG 8 cut(s) 20, 85, 107, 651, 723, 929, 1091, 1215
NlaIV GGNNCC 3 cut(s) 531, 936, 1117
NmeAIII GCCGAG 1 cut(s) 741
NmuCI GTSAC 2 cut(s) 115, 954
NspI RCATGY 2 cut(s) 1091, 1215
PciI ACATGT 1 cut(s) 1211
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 7 cut(s) 150, 179, 260, 518, 586, 716, 1027
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 493
PscI ACATGT 1 cut(s) 1211
PshBI ATTAAT 1 cut(s) 920
Psp124BI GAGCTC 1 cut(s) 734
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 55, 532
PspEI GGTNACC 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 1022
PspGI CCWGG 2 cut(s) 55, 532
PspN4I GGNNCC 3 cut(s) 531, 936, 1117
PspPI GGNCC 2 cut(s) 493, 895
PspPPI RGGWCCY 1 cut(s) 493
PstI CTGCAG 1 cut(s) 967
PstNI CAGNNNCTG 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 1216
RsaNI GTAC 1 cut(s) 1215
SacI GAGCTC 1 cut(s) 734
SaqAI TTAA 6 cut(s) 903, 920, 980, 1182, 1314, 1328
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 7 cut(s) 19, 166, 512, 644, 837, 1035, 1206
Sau96I GGNCC 2 cut(s) 493, 895
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 57, 534
SduI GDGCHC 2 cut(s) 734, 937
SfaNI GCATC 2 cut(s) 289, 821
SfcI CTRYAG 3 cut(s) 963, 1191, 1287
SinI GGWCC 2 cut(s) 493, 895
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 7 cut(s) 120, 211, 289, 332, 569, 997, 1329
SsiI CCGC 1 cut(s) 841
SspI AATATT 1 cut(s) 1318
SspMI CTAG 3 cut(s) 200, 447, 497
SstI GAGCTC 1 cut(s) 734
StyD4I CCNGG 2 cut(s) 55, 532
StyI CCWWGG 3 cut(s) 425, 489, 925
TaaI ACNGT 1 cut(s) 1326
TaiI ACGT 1 cut(s) 1007
TaqI TCGA 2 cut(s) 714, 1001
TasI AATT 7 cut(s) 120, 211, 289, 332, 569, 997, 1329
TatI WGTACW 1 cut(s) 1214
TfiI GAWTC 7 cut(s) 150, 179, 260, 518, 586, 716, 1027
Tru1I TTAA 6 cut(s) 903, 920, 980, 1182, 1314, 1328
Tru9I TTAA 6 cut(s) 903, 920, 980, 1182, 1314, 1328
TscAI CASTG 3 cut(s) 351, 1170, 1275
TseFI GTSAC 2 cut(s) 115, 954
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 2 cut(s) 115, 954
TspDTI ATGAA 3 cut(s) 185, 708, 1069
TspGWI ACGGA 1 cut(s) 1122
TspRI CASTG 3 cut(s) 351, 1170, 1275
VpaK11BI GGWCC 2 cut(s) 493, 895
VspI ATTAAT 1 cut(s) 920
XapI RAATTY 1 cut(s) 997
XceI RCATGY 2 cut(s) 1091, 1215
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 3 cut(s) 200, 447, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.