FvH4_6g26600

Aminotransferase class I and II

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
20306602 .. 20309590
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26600.t2

Sequence Viewer

Length: 1254 bp
ATGAAAAACAAGTGGAATTTTCAGGGGAATGGAGAGCTCAAAACGGCACCAGGAATCACTATTCGAGGAGTTCTCTCCAATATAATGCAAAATCTCAACAAAGATGATCAAAGGCCTATCATTCCTCTCGGCCACGGTGACCCCTCCGCTTTCCCATGCTTCCGGACTAGTCTTTCGGCTGAAGATGCCATCGTTGATTCTGTTCGGTCCGGCAAGTTCAACTGCTATTCTCCCGCAGTTGGTATTTTACCAGCCAGGAGGGCAGTTGCAGATTATCTGTCCAAAGATCTCCCATACAAGTTATCGCCTGACGATGTTTATCTTACAATTGGATGTACACAAGCAATTGAAGTGCTACTGACAGCTATATCTCTGTCAAATCCTGTTGCCAACATTCTGCTTCCAAGGCCAGGCTTCCCTTTCTATGATGTTCGGGCAGCCTGTTCCAATCTGGAAGTTCGCCGCTATGATCTGCTTCCGGAACAGGGTTGGGAGGTTGATCTTGAAGCTCTTGAAGCACTTGCAGATGAAAATACAGTTGCCATGGTCATCATCAATCCCGGAAATCCTTGTGGAAATGTTTATACGTCTCAACATATGAAGAAGATTGCAGAGACGGCAAGGAAGCTTGGGATTATTGTAATTGCTGATGAAGTGTATGACCATCTTACTTTCGCAAGCACTCCATTTGTTCCAATGGGGACATTTGGATCTATTGCCCCAGTTCTTACACTTGGTTCCATATCAAAAAGATGGATTGTACCTGGTTGGAGACTTGGTTGGATTGTCACCTGTGACCCCAATGGAATTCTTCAACAAACGGGGATTATGAAGTCCATTACAGGGTGTCTCGAGGTCTCATCGGATGCTCCAACCTTCATTCAGGCAGCAATTCCTCAAATTATAGAGAACACAAAGGAAGATTTCTTTTTGAAAATAGTAGAGATACTAAGAGGTGCTGCAGACATATGTTTTGATAAACTTAATGAGATCCCCTTCATTACCTGCCCAAGCAAACCTGAGGGTTCCATGTTTGTAATGGTAAAGCTGAATCTCTCATTGTTGGATGACATTAGTGATGATGTTGAGTTCAGCCTCAAACTTGCCACAGAGGAATCTGTCATAGTACTACCTGGTGTAACTGTCGGATTGAAGAATTGGTTGCGGATAACATTCGCCTGTGACCATTCCAGTCTTGAAGATGGCCTTGGGAGGATTAAAGGTTTCTGTGAAAGGCATGCCAAGAAAGAGTAA

Protein Analysis

418

Amino Acids

45.73

Weight (kDa)

5.18

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 40 - 348 4.5e-42 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1013
AccB1I GGYRCC 1 cut(s) 46
AccIII TCCGGA 2 cut(s) 162, 478
AciI CCGC 4 cut(s) 147, 234, 463, 1165
AclWI GGATC 2 cut(s) 718, 985
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 2 cut(s) 16, 807
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 3 cut(s) 337, 762, 1128
AfiI CCNNNNNNNGG 4 cut(s) 239, 410, 485, 843
AgsI TTSAA 8 cut(s) 220, 350, 506, 515, 815, 934, 1153, 1199
AhlI ACTAGT 1 cut(s) 167
AjnI CCWGG 5 cut(s) 49, 254, 409, 763, 1132
AjuI GAANNNNNNNTTGG 2 cut(s) 1191, 1223
AluBI AGCT 5 cut(s) 37, 365, 509, 628, 1048
AluI AGCT 5 cut(s) 37, 365, 509, 628, 1048
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 5 cut(s) 594, 608, 766, 854, 862
AlwI GGATC 2 cut(s) 718, 985
Ama87I CYCGRG 1 cut(s) 851
Aor13HI TCCGGA 2 cut(s) 162, 478
AoxI GGCC 4 cut(s) 113, 130, 407, 1204
ApeKI GCWGC 3 cut(s) 437, 887, 959
ApoI RAATTY 2 cut(s) 16, 807
ArsI GACNNNNNNTTYG 4 cut(s) 157, 189, 956, 988
AspS9I GGNCC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 561
AsuHPI GGTGA 2 cut(s) 149, 781
AvaI CYCGRG 1 cut(s) 851
AvaII GGWCC 1 cut(s) 207
AxyI CCTNAGG 1 cut(s) 1020
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 449, 899, 946
BccI CCATC 4 cut(s) 197, 672, 747, 1196
BceAI ACGGC 2 cut(s) 60, 633
BciT130I CCWGG 5 cut(s) 51, 256, 411, 765, 1134
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 561
BcoDI GTCTC 5 cut(s) 594, 608, 766, 854, 862
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 960
BfuAI ACCTGC 1 cut(s) 1013
BglI GCCNNNNNGGC 1 cut(s) 260
BglII AGATCT 1 cut(s) 286
BisI GCNGC 4 cut(s) 438, 463, 888, 960
BlsI GCNGC 4 cut(s) 439, 464, 889, 961
BmcAI AGTACT 1 cut(s) 1128
Bme1390I CCNGG 6 cut(s) 51, 256, 411, 561, 765, 1134
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 3 cut(s) 48, 739, 1027
BmrFI CCNGG 6 cut(s) 51, 256, 411, 561, 765, 1134
BmrI ACTGGG 1 cut(s) 716
BmsI GCATC 2 cut(s) 175, 856
BmuI ACTGGG 1 cut(s) 716
BplI GAGNNNNNCTC 2 cut(s) 57, 89
BpuMI CCSGG 1 cut(s) 561
BsaBI GATNNNNATC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 862
BsaJI CCNNGG 4 cut(s) 133, 404, 543, 1207
BsaWI WCCGGW 2 cut(s) 162, 478
BsaXI ACNNNNNCTCC 2 cut(s) 763, 793
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 410, 485, 843
Bse1I ACTGG 2 cut(s) 722, 1191
Bse21I CCTNAGG 1 cut(s) 1020
Bse8I GATNNNNATC 1 cut(s) 318
BseAI TCCGGA 2 cut(s) 162, 478
BseBI CCWGG 5 cut(s) 51, 256, 411, 765, 1134
BseDI CCNNGG 4 cut(s) 133, 404, 543, 1207
BseGI GGATG 3 cut(s) 338, 871, 1072
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 4 cut(s) 239, 410, 485, 843
BseMII CTCAG 1 cut(s) 1011
BseNI ACTGG 2 cut(s) 722, 1191
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 449, 899, 946
BshFI GGCC 4 cut(s) 115, 132, 409, 1206
BshNI GGYRCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 4 cut(s) 163, 210, 479, 561
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 4 cut(s) 239, 410, 485, 843
BsmAI GTCTC 5 cut(s) 594, 608, 766, 854, 862
BsmBI CGTCTC 2 cut(s) 594, 608
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 4 cut(s) 115, 132, 409, 1206
Bso31I GGTCTC 1 cut(s) 862
BsoBI CYCGRG 1 cut(s) 851
Bsp1286I GDGCHC 1 cut(s) 39
Bsp13I TCCGGA 2 cut(s) 162, 478
Bsp1407I TGTACA 1 cut(s) 335
Bsp143I GATC 6 cut(s) 106, 286, 469, 499, 710, 990
Bsp19I CCATGG 1 cut(s) 543
BspACI CCGC 4 cut(s) 147, 234, 463, 1165
BspANI GGCC 4 cut(s) 115, 132, 409, 1206
BspCNI CTCAG 1 cut(s) 1012
BspEI TCCGGA 2 cut(s) 162, 478
BspLI GGNNCC 3 cut(s) 48, 739, 1027
BspMAI CTGCAG 1 cut(s) 964
BspMI ACCTGC 1 cut(s) 1013
BspPI GGATC 2 cut(s) 718, 985
BspT107I GGYRCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 862
BsrGI TGTACA 1 cut(s) 335
BsrI ACTGG 2 cut(s) 722, 1191
BssECI CCNNGG 4 cut(s) 133, 404, 543, 1207
BssMI GATC 6 cut(s) 106, 286, 469, 499, 710, 990
BssT1I CCWWGG 3 cut(s) 404, 543, 1207
Bst2UI CCWGG 5 cut(s) 51, 256, 411, 765, 1134
Bst4CI ACNGT 3 cut(s) 137, 538, 1144
BstAUI TGTACA 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 679, 1239
BstDEI CTNAG 2 cut(s) 950, 1020
BstDSI CCRYGG 2 cut(s) 133, 543
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 3 cut(s) 338, 871, 1072
BstKTI GATC 6 cut(s) 109, 289, 472, 502, 713, 993
BstMAI GTCTC 5 cut(s) 594, 608, 766, 854, 862
BstMBI GATC 6 cut(s) 106, 286, 469, 499, 710, 990
BstMWI GCNNNNNNNGC 5 cut(s) 185, 260, 406, 515, 617
BstNI CCWGG 5 cut(s) 51, 256, 411, 765, 1134
BstNSI RCATGY 1 cut(s) 1241
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 6 cut(s) 49, 254, 409, 559, 763, 1132
BstSFI CTRYAG 1 cut(s) 960
BstV1I GCAGC 3 cut(s) 449, 899, 946
BstX2I RGATCY 3 cut(s) 286, 710, 990
BstYI RGATCY 3 cut(s) 286, 710, 990
Bsu36I CCTNAGG 1 cut(s) 1020
BsuRI GGCC 4 cut(s) 115, 132, 409, 1206
BtgI CCRYGG 2 cut(s) 133, 543
BtsCI GGATG 3 cut(s) 338, 871, 1072
BveI ACCTGC 1 cut(s) 1013
Cac8I GCNNGC 2 cut(s) 679, 1239
Cfr13I GGNCC 1 cut(s) 207
CpoI CGGWCCG 1 cut(s) 207
CsiI ACCWGGT 2 cut(s) 763, 1132
Csp6I GTAC 3 cut(s) 336, 761, 1127
CspI CGGWCCG 1 cut(s) 207
CviAII CATG 4 cut(s) 156, 544, 1030, 1238
CviQI GTAC 3 cut(s) 336, 761, 1127
DdeI CTNAG 2 cut(s) 950, 1020
DpnI GATC 6 cut(s) 108, 288, 471, 501, 712, 992
DpnII GATC 6 cut(s) 106, 286, 469, 499, 710, 990
EaeI YGGCCR 1 cut(s) 130
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 3 cut(s) 404, 543, 1207
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 862
Eco47I GGWCC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 201
Eco81I CCTNAGG 1 cut(s) 1020
Eco88I CYCGRG 1 cut(s) 851
Eco91I GGTNACC 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 807
EcoRII CCWGG 5 cut(s) 49, 254, 409, 763, 1132
EcoT14I CCWWGG 3 cut(s) 404, 543, 1207
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 3 cut(s) 404, 543, 1207
Esp3I CGTCTC 2 cut(s) 594, 608
FaeI CATG 4 cut(s) 159, 547, 1033, 1241
FalI AAGNNNNNCTT 2 cut(s) 1191, 1223
FaqI GGGAC 1 cut(s) 715
FatI CATG 4 cut(s) 155, 543, 1029, 1237
FauI CCCGC 1 cut(s) 241
FauNDI CATATG 2 cut(s) 597, 968
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 438, 463, 888, 960
FokI GGATG 3 cut(s) 345, 878, 1079
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 4 cut(s) 438, 463, 888, 960
FspBI CTAG 1 cut(s) 168
GluI GCNGC 4 cut(s) 438, 463, 888, 960
HaeIII GGCC 4 cut(s) 115, 132, 409, 1206
HapII CCGG 4 cut(s) 163, 210, 479, 561
Hin1II CATG 4 cut(s) 159, 547, 1033, 1241
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 4 cut(s) 54, 197, 1051, 1115
HpaII CCGG 4 cut(s) 163, 210, 479, 561
HphI GGTGA 2 cut(s) 149, 781
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 865, 1148
Hpy188III TCNNGA 7 cut(s) 163, 452, 479, 503, 512, 851, 1196
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 886, 1006
HpyCH4III ACNGT 3 cut(s) 137, 538, 1144
HpyCH4IV ACGT 1 cut(s) 587
HpyCH4V TGCA 5 cut(s) 88, 269, 524, 611, 962
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 260, 406, 515, 617
HpyF3I CTNAG 2 cut(s) 950, 1020
HpySE526I ACGT 1 cut(s) 587
Hsp92II CATG 4 cut(s) 159, 547, 1033, 1241
Kpn2I TCCGGA 2 cut(s) 162, 478
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 6 cut(s) 106, 286, 469, 499, 710, 990
LmnI GCTCC 1 cut(s) 874
Lsp1109I GCAGC 3 cut(s) 449, 899, 946
LweI GCATC 2 cut(s) 175, 856
MabI ACCWGGT 2 cut(s) 763, 1132
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 5 cut(s) 137, 787, 794, 1138, 1181
MalI GATC 6 cut(s) 108, 288, 471, 501, 712, 992
MboI GATC 6 cut(s) 106, 286, 469, 499, 710, 990
MboII GAAGA 7 cut(s) 194, 613, 616, 803, 932, 1165, 1211
MfeI CAATTG 2 cut(s) 327, 345
MflI RGATCY 3 cut(s) 286, 710, 990
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 8 cut(s) 16, 327, 345, 642, 807, 891, 900, 1156
MmeI TCCRAC 5 cut(s) 749, 761, 896, 1044, 1126
MroI TCCGGA 2 cut(s) 162, 478
MseI TTAA 2 cut(s) 984, 1218
MspI CCGG 4 cut(s) 163, 210, 479, 561
MspR9I CCNGG 6 cut(s) 51, 256, 411, 561, 765, 1134
MunI CAATTG 2 cut(s) 327, 345
MvaI CCWGG 5 cut(s) 51, 256, 411, 765, 1134
MwoI GCNNNNNNNGC 5 cut(s) 185, 260, 406, 515, 617
NciI CCSGG 1 cut(s) 561
NcoI CCATGG 1 cut(s) 543
NdeI CATATG 2 cut(s) 597, 968
NdeII GATC 6 cut(s) 106, 286, 469, 499, 710, 990
NlaIII CATG 4 cut(s) 159, 547, 1033, 1241
NlaIV GGNNCC 3 cut(s) 48, 739, 1027
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 4 cut(s) 137, 787, 794, 1181
NspI RCATGY 1 cut(s) 1241
PaeI GCATGC 1 cut(s) 1241
PaeR7I CTCGAG 1 cut(s) 851
PceI AGGCCT 1 cut(s) 115
PfeI GAWTC 4 cut(s) 54, 197, 1051, 1115
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 4 cut(s) 439, 464, 889, 961
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 5 cut(s) 49, 254, 409, 763, 1132
PspEI GGTNACC 1 cut(s) 137
PspGI CCWGG 5 cut(s) 49, 254, 409, 763, 1132
PspN4I GGNNCC 3 cut(s) 48, 739, 1027
PspPI GGNCC 1 cut(s) 207
PstI CTGCAG 1 cut(s) 964
PsuI RGATCY 3 cut(s) 286, 710, 990
RsaI GTAC 3 cut(s) 337, 762, 1128
RsaNI GTAC 3 cut(s) 336, 761, 1127
Rsr2I CGGWCCG 1 cut(s) 207
RsrII CGGWCCG 1 cut(s) 207
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 984, 1218
SatI GCNGC 4 cut(s) 438, 463, 888, 960
Sau3AI GATC 6 cut(s) 106, 286, 469, 499, 710, 990
Sau96I GGNCC 1 cut(s) 207
ScaI AGTACT 1 cut(s) 1128
ScrFI CCNGG 6 cut(s) 51, 256, 411, 561, 765, 1134
SduI GDGCHC 1 cut(s) 39
SexAI ACCWGGT 2 cut(s) 763, 1132
SfaNI GCATC 2 cut(s) 175, 856
SfcI CTRYAG 1 cut(s) 960
Sfr274I CTCGAG 1 cut(s) 851
SinI GGWCC 1 cut(s) 207
SlaI CTCGAG 1 cut(s) 851
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
SpeI ACTAGT 1 cut(s) 167
SphI GCATGC 1 cut(s) 1241
Sse9I AATT 8 cut(s) 16, 327, 345, 642, 807, 891, 900, 1156
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 4 cut(s) 147, 234, 463, 1165
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 6 cut(s) 49, 254, 409, 559, 763, 1132
StyI CCWWGG 3 cut(s) 404, 543, 1207
TaaI ACNGT 3 cut(s) 137, 538, 1144
TaiI ACGT 1 cut(s) 590
TaqI TCGA 2 cut(s) 64, 852
TaqII GACCGA 1 cut(s) 195
TasI AATT 8 cut(s) 16, 327, 345, 642, 807, 891, 900, 1156
TatI WGTACW 2 cut(s) 335, 1126
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 4 cut(s) 54, 197, 1051, 1115
Tru1I TTAA 2 cut(s) 984, 1218
Tru9I TTAA 2 cut(s) 984, 1218
TseFI GTSAC 4 cut(s) 137, 787, 794, 1181
TseI GCWGC 3 cut(s) 437, 887, 959
Tsp45I GTSAC 4 cut(s) 137, 787, 794, 1181
TspDTI ATGAA 7 cut(s) 17, 543, 614, 666, 845, 868, 988
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 2 cut(s) 16, 807
XceI RCATGY 1 cut(s) 1241
XcmI CCANNNNNNNNNTGG 1 cut(s) 1036
XhoI CTCGAG 1 cut(s) 851
XspI CTAG 1 cut(s) 168
ZrmI AGTACT 1 cut(s) 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.