Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Forward (+)

39634345 .. 39639165

Gene Structure 4821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG313500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAAAACAAGTGGAATTTTCAGGGGAATGGAGAGCTCAAGCTGGCACCGGCACCCAGGATTCGAGGAGTTCTCAGCATGATAATGCAAAATATCAACAAAGATGACCAAAGGACTACCATTCCTTTAGGCATCGGTGACCCCTCCGCTTTCCCATGCTTTCGGACTAGCATTTCAGCCGAAGATGCCATCGTTGAATCTGTTCGGTCGGGCAAGTTTAACTGCTATTCTCCCTCAATTGGTATTCTACCAGCAAGGAGGGCAATTGCAGATTATCTGTCAAATGATCTCCCATACAAGTTATCGCCTGACGATGTTTATGTTACAAGTGGATGTACGCATGCAATTGAAATGGTTCTGACAGCTATATCTCTGTCAAGTCCTGTTGCCAACATTCTGCTTCCAAGGCCTGGCTTCACTTTCTATGACACTCGGGCAGCCTATTCCAATCTGGAAGTTCGCCGATATGATCTGCTTCCAGAAAAGGGTTGGGAGGTTGATCTTGAAGCTCTTGAGGCACTGGCAGATGAATATACTGTTGCCATGGTCATCATCAATCCTGGAAATCCTTGTGGAAGTGTGTATACGTCTCAACATTTGAAGAAGATTGCAGAGACAGCGAGGAAGCTTGGGATTCTTGTAATTGCTGATGAAGTGTATAACCATCTTACTTTCGGAAGTACTCCATTTGTGCCAATGGGGACATTTGGATCTATTGTCCCAGTTCTTACACTTGGTTCTATATCAAAGAGATGGATTGTACCTGGTTGGAGACTTGGTTGGATTGCCATCTGTGACCCCAATGCAATTCTTCAAAATTCGGGGATTATAAAGTCCATTACAGGATGTCTCGAAGTCTCATCGGATGCTCCAACCTTCATTCAGGCAGCAATTCCTCAAATTATAGAGCACACAAAGGAGGATTTCTTTTTGAAAATAGTTGAGATGCTAAGAGGTGCTGCAGTCATATGTTTTGATAAACTTAGTGAGATTCCCTGCATTACGTGCCCAAGCAAACCTGAGGGTTCCATGTTTGTAATGGCAAAGCTGAATCTCTCATTGTTGGATGAAATTAGTGATGATGTTGAGTTCAGCCTCAAACTTGCCAAAGAGGAATCTGTCATAGTACTACCTGGTGTGGCTGTTGGGTTGAAGAACTGGTTGCGGATAACGTTCGCTTGTGACCATTCAAGTCTTGAAGATGGCCTTGGGAGGATTAAAGGCTTCTGTGAAAGGCATGCCAAGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

417

Amino Acids

45.76

Weight (kDa)

5.66

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	40 - 406	5.2e-54	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	830
AccB1I	GGYRCC	2 cut(s)	46, 52
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	584
AciI	CCGC	2 cut(s)	147, 1165
AclI	AACGTT	1 cut(s)	1172
AclWI	GGATC	1 cut(s)	718
AcsI	RAATTY	2 cut(s)	16, 817
AfaI	GTAC	4 cut(s)	337, 682, 762, 1128
AfiI	CCNNNNNNNGG	3 cut(s)	239, 410, 485
AgsI	TTSAA	9 cut(s)	197, 350, 506, 601, 815, 934, 1153, 1191, 1199
AjnI	CCWGG	5 cut(s)	56, 409, 559, 763, 1132
AjuI	GAANNNNNNNTTGG	2 cut(s)	1191, 1223
AluBI	AGCT	6 cut(s)	37, 43, 365, 509, 628, 1048
AluI	AGCT	6 cut(s)	37, 43, 365, 509, 628, 1048
Alw21I	GWGCWC	2 cut(s)	39, 912
Alw26I	GTCTC	5 cut(s)	594, 608, 766, 854, 862
AlwI	GGATC	1 cut(s)	718
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	2 cut(s)	407, 1204
ApeKI	GCWGC	3 cut(s)	437, 887, 959
ApoI	RAATTY	2 cut(s)	16, 817
Asp700I	GAANNNNTTC	2 cut(s)	201, 354
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	432
AxyI	CCTNAGG	1 cut(s)	1020
BaeGI	GKGCMC	1 cut(s)	1010
BanI	GGYRCC	2 cut(s)	46, 52
BanII	GRGCYC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	568, 600
Bbv12I	GWGCWC	2 cut(s)	39, 912
BbvI	GCAGC	3 cut(s)	449, 899, 946
BccI	CCATC	5 cut(s)	197, 672, 747, 797, 1196
BciT130I	CCWGG	5 cut(s)	58, 411, 561, 765, 1134
BcoDI	GTCTC	5 cut(s)	594, 608, 766, 854, 862
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	960
BisI	GCNGC	3 cut(s)	438, 888, 960
BlsI	GCNGC	3 cut(s)	439, 889, 961
BmcAI	AGTACT	2 cut(s)	682, 1128
Bme1390I	CCNGG	5 cut(s)	58, 411, 561, 765, 1134
BmeT110I	CYCGRG	1 cut(s)	432
BmiI	GGNNCC	3 cut(s)	48, 54, 1027
BmrFI	CCNGG	5 cut(s)	58, 411, 561, 765, 1134
BmrI	ACTGGG	1 cut(s)	716
BmsI	GCATC	4 cut(s)	141, 175, 856, 936
BmuI	ACTGGG	1 cut(s)	716
BplI	GAGNNNNNCTC	2 cut(s)	57, 89
BpuEI	CTTGAG	2 cut(s)	23, 533
BsaAI	YACGTR	1 cut(s)	1005
BsaBI	GATNNNNATC	1 cut(s)	788
BsaJI	CCNNGG	4 cut(s)	56, 404, 543, 1207
BsaXI	ACNNNNNCTCC	2 cut(s)	763, 793
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 410, 485
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	3 cut(s)	525, 722, 1163
Bse21I	CCTNAGG	1 cut(s)	1020
Bse8I	GATNNNNATC	1 cut(s)	788
BseBI	CCWGG	5 cut(s)	58, 411, 561, 765, 1134
BseDI	CCNNGG	4 cut(s)	56, 404, 543, 1207
BseGI	GGATG	4 cut(s)	338, 851, 871, 1072
BseJI	GATNNNNATC	1 cut(s)	788
BseLI	CCNNNNNNNGG	3 cut(s)	239, 410, 485
BseMII	CTCAG	2 cut(s)	88, 1011
BseNI	ACTGG	3 cut(s)	525, 722, 1163
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	1010
BseXI	GCAGC	3 cut(s)	449, 899, 946
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	409, 1206
BshNI	GGYRCC	2 cut(s)	46, 52
BsiEI	CGRYCG	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	39, 912
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	2 cut(s)	704, 715
BslI	CCNNNNNNNGG	3 cut(s)	239, 410, 485
BsmAI	GTCTC	5 cut(s)	594, 608, 766, 854, 862
BsmBI	CGTCTC	1 cut(s)	594
BsmFI	GGGAC	2 cut(s)	704, 715
BsnI	GGCC	2 cut(s)	409, 1206
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	3 cut(s)	39, 912, 1010
Bsp143I	GATC	4 cut(s)	286, 469, 499, 710
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	2 cut(s)	147, 1165
BspANI	GGCC	2 cut(s)	409, 1206
BspCNI	CTCAG	2 cut(s)	87, 1012
BspLI	GGNNCC	3 cut(s)	48, 54, 1027
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	1 cut(s)	718
BspT107I	GGYRCC	2 cut(s)	46, 52
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	3 cut(s)	525, 722, 1163
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	4 cut(s)	56, 404, 543, 1207
BssMI	GATC	4 cut(s)	286, 469, 499, 710
BssNAI	GTATAC	1 cut(s)	585
BssT1I	CCWWGG	3 cut(s)	404, 543, 1207
Bst1107I	GTATAC	1 cut(s)	585
Bst2UI	CCWGG	5 cut(s)	58, 411, 561, 765, 1134
Bst4CI	ACNGT	1 cut(s)	538
BstAPI	GCANNNNNTGC	1 cut(s)	1005
BstBAI	YACGTR	1 cut(s)	1005
BstC8I	GCNNGC	3 cut(s)	45, 342, 1239
BstDEI	CTNAG	4 cut(s)	74, 950, 983, 1020
BstDSI	CCRYGG	1 cut(s)	543
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	4 cut(s)	338, 851, 871, 1072
BstKTI	GATC	4 cut(s)	289, 472, 502, 713
BstMAI	GTCTC	5 cut(s)	594, 608, 766, 854, 862
BstMBI	GATC	4 cut(s)	286, 469, 499, 710
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 260, 406, 515, 617, 1005
BstNI	CCWGG	5 cut(s)	58, 411, 561, 765, 1134
BstNSI	RCATGY	2 cut(s)	344, 1241
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	5 cut(s)	56, 409, 559, 763, 1132
BstSFI	CTRYAG	1 cut(s)	960
BstSLI	GKGCMC	1 cut(s)	1010
BstV1I	GCAGC	3 cut(s)	449, 899, 946
BstX2I	RGATCY	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	710
BstZ17I	GTATAC	1 cut(s)	585
Bsu36I	CCTNAGG	1 cut(s)	1020
BsuRI	GGCC	2 cut(s)	409, 1206
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	4 cut(s)	338, 851, 871, 1072
BtsIMutI	CAGTG	1 cut(s)	518
Cac8I	GCNNGC	3 cut(s)	45, 342, 1239
Cfr10I	RCCGGY	1 cut(s)	49
CsiI	ACCWGGT	2 cut(s)	763, 1132
Csp6I	GTAC	4 cut(s)	336, 681, 761, 1127
CviAII	CATG	6 cut(s)	79, 156, 341, 544, 1030, 1238
CviQI	GTAC	4 cut(s)	336, 681, 761, 1127
DdeI	CTNAG	4 cut(s)	74, 950, 983, 1020
DpnI	GATC	4 cut(s)	288, 471, 501, 712
DpnII	GATC	4 cut(s)	286, 469, 499, 710
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	404, 543, 1207
Eco147I	AGGCCT	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
Eco81I	CCTNAGG	1 cut(s)	1020
Eco88I	CYCGRG	1 cut(s)	432
Eco91I	GGTNACC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	5 cut(s)	56, 409, 559, 763, 1132
EcoT14I	CCWWGG	3 cut(s)	404, 543, 1207
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	404, 543, 1207
Esp3I	CGTCTC	1 cut(s)	594
FaeI	CATG	6 cut(s)	82, 159, 344, 547, 1033, 1241
FalI	AAGNNNNNCTT	2 cut(s)	1191, 1223
FaqI	GGGAC	2 cut(s)	704, 715
FatI	CATG	6 cut(s)	78, 155, 340, 543, 1029, 1237
FauNDI	CATATG	1 cut(s)	968
FblI	GTMKAC	1 cut(s)	584
Fnu4HI	GCNGC	3 cut(s)	438, 888, 960
FokI	GGATG	4 cut(s)	345, 858, 878, 1079
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	438, 888, 960
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	3 cut(s)	438, 888, 960
HaeIII	GGCC	2 cut(s)	409, 1206
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	6 cut(s)	82, 159, 344, 547, 1033, 1241
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	6 cut(s)	61, 197, 634, 991, 1051, 1115
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	585
Hpy188I	TCNGA	4 cut(s)	165, 360, 677, 865
Hpy188III	TCNNGA	6 cut(s)	452, 479, 503, 512, 851, 1196
Hpy8I	GTNNAC	1 cut(s)	585
HpyAV	CCTTC	1 cut(s)	886
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	3 cut(s)	587, 1004, 1172
HpyCH4V	TGCA	7 cut(s)	88, 269, 344, 611, 806, 962, 999
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 260, 406, 515, 617, 1005
HpyF3I	CTNAG	4 cut(s)	74, 950, 983, 1020
HpySE526I	ACGT	3 cut(s)	587, 1004, 1172
Hsp92II	CATG	6 cut(s)	82, 159, 344, 547, 1033, 1241
Kzo9I	GATC	4 cut(s)	286, 469, 499, 710
LmnI	GCTCC	1 cut(s)	874
Lsp1109I	GCAGC	3 cut(s)	449, 899, 946
LweI	GCATC	4 cut(s)	141, 175, 856, 936
MabI	ACCWGGT	2 cut(s)	763, 1132
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	3 cut(s)	587, 1004, 1172
MaeIII	GTNAC	4 cut(s)	137, 322, 794, 1181
MalI	GATC	4 cut(s)	288, 471, 501, 712
MboI	GATC	4 cut(s)	286, 469, 499, 710
MboII	GAAGA	6 cut(s)	194, 613, 616, 803, 1165, 1211
MfeI	CAATTG	3 cut(s)	237, 264, 345
MflI	RGATCY	1 cut(s)	710
MhlI	GDGCHC	3 cut(s)	39, 912, 1010
MmeI	TCCRAC	4 cut(s)	749, 761, 896, 1044
MroXI	GAANNNNTTC	2 cut(s)	201, 354
MseI	TTAA	2 cut(s)	219, 1218
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	5 cut(s)	58, 411, 561, 765, 1134
MunI	CAATTG	3 cut(s)	237, 264, 345
MvaI	CCWGG	5 cut(s)	58, 411, 561, 765, 1134
MwoI	GCNNNNNNNGC	6 cut(s)	185, 260, 406, 515, 617, 1005
NcoI	CCATGG	1 cut(s)	543
NdeI	CATATG	1 cut(s)	968
NdeII	GATC	4 cut(s)	286, 469, 499, 710
NlaIII	CATG	6 cut(s)	82, 159, 344, 547, 1033, 1241
NlaIV	GGNNCC	3 cut(s)	48, 54, 1027
NmuCI	GTSAC	3 cut(s)	137, 794, 1181
NspI	RCATGY	2 cut(s)	344, 1241
PaeI	GCATGC	2 cut(s)	344, 1241
PceI	AGGCCT	1 cut(s)	409
PdmI	GAANNNNTTC	2 cut(s)	201, 354
PfeI	GAWTC	6 cut(s)	61, 197, 634, 991, 1051, 1115
PflMI	CCANNNNNTGG	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	439, 889, 961
Ppu21I	YACGTR	1 cut(s)	1005
PsiI	TTATAA	1 cut(s)	830
Psp124BI	GAGCTC	1 cut(s)	39
Psp1406I	AACGTT	1 cut(s)	1172
Psp6I	CCWGG	5 cut(s)	56, 409, 559, 763, 1132
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	5 cut(s)	56, 409, 559, 763, 1132
PspN4I	GGNNCC	3 cut(s)	48, 54, 1027
PstI	CTGCAG	1 cut(s)	964
PsuI	RGATCY	1 cut(s)	710
RsaI	GTAC	4 cut(s)	337, 682, 762, 1128
RsaNI	GTAC	4 cut(s)	336, 681, 761, 1127
RseI	CAYNNNNRTG	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	219, 1218
SatI	GCNGC	3 cut(s)	438, 888, 960
Sau3AI	GATC	4 cut(s)	286, 469, 499, 710
ScaI	AGTACT	2 cut(s)	682, 1128
ScrFI	CCNGG	5 cut(s)	58, 411, 561, 765, 1134
SduI	GDGCHC	3 cut(s)	39, 912, 1010
SexAI	ACCWGGT	2 cut(s)	763, 1132
SfaNI	GCATC	4 cut(s)	141, 175, 856, 936
SfcI	CTRYAG	1 cut(s)	960
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	38, 512
SmoI	CTYRAG	2 cut(s)	38, 512
SphI	GCATGC	2 cut(s)	344, 1241
SseBI	AGGCCT	1 cut(s)	409
SsiI	CCGC	2 cut(s)	147, 1165
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	39
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	5 cut(s)	56, 409, 559, 763, 1132
StyI	CCWWGG	3 cut(s)	404, 543, 1207
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	3 cut(s)	590, 1007, 1175
TaqI	TCGA	2 cut(s)	64, 852
TaqII	GACCGA	1 cut(s)	195
TatI	WGTACW	2 cut(s)	680, 1126
TfiI	GAWTC	6 cut(s)	61, 197, 634, 991, 1051, 1115
Tru1I	TTAA	2 cut(s)	219, 1218
Tru9I	TTAA	2 cut(s)	219, 1218
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	3 cut(s)	137, 794, 1181
TseI	GCWGC	3 cut(s)	437, 887, 959
Tsp45I	GTSAC	3 cut(s)	137, 794, 1181
TspDTI	ATGAA	4 cut(s)	543, 666, 868, 1083
TspRI	CASTG	1 cut(s)	525
Van91I	CCANNNNNTGG	1 cut(s)	410
XapI	RAATTY	2 cut(s)	16, 817
XceI	RCATGY	2 cut(s)	344, 1241
XcmI	CCANNNNNNNNNTGG	2 cut(s)	486, 1036
XmiI	GTMKAC	1 cut(s)	584
XmnI	GAANNNNTTC	2 cut(s)	201, 354
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	2 cut(s)	682, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.