Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Forward (+)

29415153 .. 29416251

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0274700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCGGCAGAAGCACCATCTTCTTCTTCATCACGTAGCAATGTTTATCATCAAGGCTCCGACGACAAGGCCTTGACAGAGTCGGACTTGGCCGCCGCACAGCAGCTGATGCAACTCAGCGACGAGGATAACAACAACAGCAGCAGCAGTTGCGGCAGCAAGAAGAGAAGAAGTTACAAAGGGGAAGAGTACGAGACAGATGAAGAAGGGGTCGAATATCAGAGCCCCCTGAGTGTGATCACCTGCGCAAAGATTGAAGAGATTTTTGGGAAGGAAGACGAACAAGATTACCAGCCAAAGAAGAAGACAAGAACCCGTTGGAGGCTCCCTCCTGCCGCAATGGTGTGGGGCGTCAGAGGCTGCTTCTCCGTGGCCAACTCGAAGGGGCTGAAGTTCAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

134

Amino Acids

14.93

Weight (kDa)

5.34

Isoelectric Point (pI)

71.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	251
Acc16I	TGCGCA	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	251
AciI	CCGC	5 cut(s)	5, 93, 96, 153, 336
AcoI	YGGCCR	2 cut(s)	90, 372
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	257, 397
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	188
AlwNI	CAGNNNCTG	2 cut(s)	106, 360
AoxI	GGCC	3 cut(s)	69, 90, 372
ApeKI	GCWGC	5 cut(s)	103, 141, 144, 156, 360
AspLEI	GCGC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	282, 311
BbvI	GCAGC	5 cut(s)	115, 153, 156, 168, 347
BccI	CCATC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	58, 326
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	2 cut(s)	282, 311
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
BsaAI	YACGTR	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse3DI	GCAATG	2 cut(s)	46, 345
BseDI	CCNNGG	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMI	GCAATG	2 cut(s)	46, 345
BseMII	CTCAG	2 cut(s)	130, 221
BseXI	GCAGC	5 cut(s)	115, 153, 156, 168, 347
BshFI	GGCC	3 cut(s)	71, 92, 374
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	71, 92, 374
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	5 cut(s)	5, 93, 96, 153, 336
BspANI	GGCC	3 cut(s)	71, 92, 374
BspCNI	CTCAG	2 cut(s)	129, 222
BspLI	GGNNCC	2 cut(s)	58, 326
BspMI	ACCTGC	1 cut(s)	251
BsrDI	GCAATG	2 cut(s)	46, 345
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	1 cut(s)	237
BssNI	GRCGYC	1 cut(s)	351
Bst6I	CTCTTC	3 cut(s)	158, 180, 252
BstACI	GRCGYC	1 cut(s)	351
BstAPI	GCANNNNNTGC	2 cut(s)	109, 150
BstBAI	YACGTR	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	116, 230
BstDSI	CCRYGG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 109, 150, 153, 357
BstV1I	GCAGC	5 cut(s)	115, 153, 156, 168, 347
BstV2I	GAAGAC	2 cut(s)	282, 311
BsuRI	GGCC	3 cut(s)	71, 92, 374
BtgI	CCRYGG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	251
CaiI	CAGNNNCTG	2 cut(s)	106, 360
CfoI	GCGC	1 cut(s)	248
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	190
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	116, 230
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	2 cut(s)	90, 372
Eam1104I	CTCTTC	3 cut(s)	158, 180, 252
EarI	CTCTTC	3 cut(s)	158, 180, 252
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	227
FspI	TGCGCA	1 cut(s)	247
GlaI	GCGC	1 cut(s)	247
HaeIII	GGCC	3 cut(s)	71, 92, 374
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	351
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	1 cut(s)	80
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	4 cut(s)	61, 85, 222, 356
Hpy99I	CGWCG	2 cut(s)	65, 125
HpyAV	CCTTC	3 cut(s)	200, 265, 376
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 109, 150, 153, 357
HpyF3I	CTNAG	2 cut(s)	116, 230
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	351
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	2 cut(s)	62, 330
LpnPI	CCDG	4 cut(s)	242, 256, 305, 345
Lsp1109I	GCAGC	5 cut(s)	115, 153, 156, 168, 347
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	374
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	3 cut(s)	63, 84, 299
MnlI	CCTC	4 cut(s)	118, 315, 339, 350
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	106
MwoI	GCNNNNNNNGC	5 cut(s)	11, 109, 150, 153, 357
NdeII	GATC	1 cut(s)	237
NlaIV	GGNNCC	2 cut(s)	58, 326
NsbI	TGCGCA	1 cut(s)	247
PaqCI	CACCTGC	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	58, 326
PstNI	CAGNNNCTG	2 cut(s)	106, 360
PsyI	GACNNNGTC	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
Sau3AI	GATC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	3 cut(s)	37, 108, 245
SfaNI	GCATC	1 cut(s)	99
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	5 cut(s)	5, 93, 96, 153, 336
StuI	AGGCCT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	213, 380
TauI	GCSGC	5 cut(s)	8, 95, 98, 156, 338
TseI	GCWGC	5 cut(s)	103, 141, 144, 156, 360
TspDTI	ATGAA	2 cut(s)	18, 216
TspGWI	ACGGA	1 cut(s)	358
Tth111I	GACNNNGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.