Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000018.1

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Forward (+)

152469 .. 155031

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000018.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

atggaaatggaaaacaagtggaattttcaggggaatggagagctcaaaccggaaccaccaaccacggttcgaggagttctcaccatgataatgcaaaatctcaacaaagatgatccaaggtctatcattcctttaggccacggtgacccctccgctttcccatgctttcggactagtatttcagccgaagatgccatcgttgattctgttcggtccggcaagtttaactgctattctcccgcagttggtattctaccagcaaggagggctattgcagattacctgtcaaatgatctcccatacaagttatcgcctgacgatgtttatcttacaattgggtgtacacaagcaattgaagtggtactgacagctatatccctgtcaaatcctgttgccaacattctgcttccaaggccaggcttcccttactatgaaactcgtgcagcctgttccaatctggaagttcgtcgctatgatctgcttccagaacagggttgggaggttgatcttgaagctcttgaagcacttgcagatgaaaatactgttgccatggtcatcatcaatcctggaaatccttgtggaaatgtttatacgtctcaacatttgaagaagattgcagagacggcaaggaagcttgggattcttgtagttgctgatgaagtgtatgaccatcttactttcgcaaataccccatttgtgccaatggggacatttggatctgttgtcccagttcttacacttggttctatatcaaagagatggattgtacctggttggagacttggttggattgttacctgtgaccccaacgcaatccttcaaaagtcggggattatgaagtccattacaggatgtctcgaagtctcaacggatgctccaaccttcattcaggcagcaattcctcaaattatagagaatacaaaggaggatttctttttgaaaatagttgagatgctacgaggtgctgcagacatatgttttgataaacttaatgagattccctgcattacgtgcccaagcaaacctgagggttccatgtttgtaatggtaaagctgaatctatcattgttcgatgacattagtgatgatgttgagttcagcctcaaactcgccaaagaggaatctgtcatagtactacctggtgtgactgttggattgaagaactggttgcggataacatttgcttgtgaccattcaattcttgaagatggccttgggaggattaaaggcttctgtggaaggcatgccaagaaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

419

Amino Acids

46.08

Weight (kDa)

5.1

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	153, 240, 1171
AclWI	GGATC	2 cut(s)	107, 724
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	4 cut(s)	343, 363, 768, 1134
AfiI	CCNNNNNNNGG	3 cut(s)	245, 416, 491
AgsI	TTSAA	9 cut(s)	356, 512, 521, 607, 821, 940, 1159, 1197, 1205
AhlI	ACTAGT	1 cut(s)	173
AjnI	CCWGG	4 cut(s)	415, 565, 769, 1138
AjuI	GAANNNNNNNTTGG	2 cut(s)	1197, 1229
AluBI	AGCT	5 cut(s)	43, 371, 515, 634, 1054
AluI	AGCT	5 cut(s)	43, 371, 515, 634, 1054
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	5 cut(s)	600, 614, 772, 860, 868
AlwI	GGATC	2 cut(s)	107, 724
AoxI	GGCC	3 cut(s)	136, 413, 1210
ApeKI	GCWGC	3 cut(s)	443, 893, 965
ApoI	RAATTY	1 cut(s)	22
ArsI	GACNNNNNNTTYG	2 cut(s)	962, 994
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	73, 155
AvaII	GGWCC	1 cut(s)	213
AxyI	CCTNAGG	1 cut(s)	1026
BaeGI	GKGCMC	1 cut(s)	1016
BanII	GRGCYC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	455, 905, 952
BccI	CCATC	4 cut(s)	203, 678, 753, 1202
BceAI	ACGGC	1 cut(s)	639
BciT130I	CCWGG	4 cut(s)	417, 567, 771, 1140
BcoDI	GTCTC	5 cut(s)	600, 614, 772, 860, 868
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	966
BisI	GCNGC	3 cut(s)	444, 894, 966
BlsI	GCNGC	3 cut(s)	445, 895, 967
BmcAI	AGTACT	1 cut(s)	1134
Bme1390I	CCNGG	4 cut(s)	417, 567, 771, 1140
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	54, 1033
BmrFI	CCNGG	4 cut(s)	417, 567, 771, 1140
BmrI	ACTGGG	1 cut(s)	722
BmsI	GCATC	3 cut(s)	181, 862, 942
BmuI	ACTGGG	1 cut(s)	722
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BsaAI	YACGTR	1 cut(s)	1011
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	6 cut(s)	63, 116, 139, 410, 549, 1213
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	4 cut(s)	769, 799, 859, 889
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 416, 491
Bse1I	ACTGG	2 cut(s)	728, 1169
Bse21I	CCTNAGG	1 cut(s)	1026
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	4 cut(s)	417, 567, 771, 1140
BseDI	CCNNGG	6 cut(s)	63, 116, 139, 410, 549, 1213
BseGI	GGATG	2 cut(s)	857, 877
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	245, 416, 491
BseMII	CTCAG	1 cut(s)	1017
BseNI	ACTGG	2 cut(s)	728, 1169
BseRI	GAGGAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	1016
BseXI	GCAGC	3 cut(s)	455, 905, 952
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	3 cut(s)	138, 415, 1212
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	50, 216
BslFI	GGGAC	2 cut(s)	710, 721
BslI	CCNNNNNNNGG	3 cut(s)	245, 416, 491
BsmAI	GTCTC	5 cut(s)	600, 614, 772, 860, 868
BsmBI	CGTCTC	2 cut(s)	600, 614
BsmFI	GGGAC	2 cut(s)	710, 721
BsnI	GGCC	3 cut(s)	138, 415, 1212
Bsp1286I	GDGCHC	2 cut(s)	45, 1016
Bsp1407I	TGTACA	1 cut(s)	341
Bsp143I	GATC	5 cut(s)	112, 292, 475, 505, 716
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	3 cut(s)	153, 240, 1171
BspANI	GGCC	3 cut(s)	138, 415, 1212
BspCNI	CTCAG	1 cut(s)	1018
BspLI	GGNNCC	2 cut(s)	54, 1033
BspMAI	CTGCAG	1 cut(s)	970
BspPI	GGATC	2 cut(s)	107, 724
BsrGI	TGTACA	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	728, 1169
BssECI	CCNNGG	6 cut(s)	63, 116, 139, 410, 549, 1213
BssMI	GATC	5 cut(s)	112, 292, 475, 505, 716
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	4 cut(s)	116, 410, 549, 1213
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	4 cut(s)	417, 567, 771, 1140
Bst4CI	ACNGT	4 cut(s)	67, 143, 544, 1150
BstAPI	GCANNNNNTGC	1 cut(s)	1011
BstAUI	TGTACA	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	1011
BstC8I	GCNNGC	1 cut(s)	1245
BstDEI	CTNAG	1 cut(s)	1026
BstDSI	CCRYGG	3 cut(s)	63, 139, 549
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	857, 877
BstKTI	GATC	5 cut(s)	115, 295, 478, 508, 719
BstMAI	GTCTC	5 cut(s)	600, 614, 772, 860, 868
BstMBI	GATC	5 cut(s)	112, 292, 475, 505, 716
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 266, 412, 521, 623, 1011
BstNI	CCWGG	4 cut(s)	417, 567, 771, 1140
BstNSI	RCATGY	1 cut(s)	1247
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	4 cut(s)	415, 565, 769, 1138
BstSFI	CTRYAG	1 cut(s)	966
BstSLI	GKGCMC	1 cut(s)	1016
BstV1I	GCAGC	3 cut(s)	455, 905, 952
BstX2I	RGATCY	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	716
Bsu36I	CCTNAGG	1 cut(s)	1026
BsuRI	GGCC	3 cut(s)	138, 415, 1212
BtgI	CCRYGG	3 cut(s)	63, 139, 549
BtsCI	GGATG	2 cut(s)	857, 877
Cac8I	GCNNGC	1 cut(s)	1245
Cfr13I	GGNCC	1 cut(s)	213
CpoI	CGGWCCG	1 cut(s)	213
CsiI	ACCWGGT	2 cut(s)	769, 1138
Csp6I	GTAC	4 cut(s)	342, 362, 767, 1133
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CspI	CGGWCCG	1 cut(s)	213
CviAII	CATG	5 cut(s)	85, 162, 550, 1036, 1244
CviQI	GTAC	4 cut(s)	342, 362, 767, 1133
DdeI	CTNAG	1 cut(s)	1026
DpnI	GATC	5 cut(s)	114, 294, 477, 507, 718
DpnII	GATC	5 cut(s)	112, 292, 475, 505, 716
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	4 cut(s)	116, 410, 549, 1213
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	43
Eco81I	CCTNAGG	1 cut(s)	1026
Eco91I	GGTNACC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	143
EcoRII	CCWGG	4 cut(s)	415, 565, 769, 1138
EcoT14I	CCWWGG	4 cut(s)	116, 410, 549, 1213
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	4 cut(s)	116, 410, 549, 1213
Esp3I	CGTCTC	2 cut(s)	600, 614
FaeI	CATG	5 cut(s)	88, 165, 553, 1039, 1247
FalI	AAGNNNNNCTT	2 cut(s)	1197, 1229
FaqI	GGGAC	2 cut(s)	710, 721
FatI	CATG	5 cut(s)	84, 161, 549, 1035, 1243
FauI	CCCGC	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	974
Fnu4HI	GCNGC	3 cut(s)	444, 894, 966
FokI	GGATG	2 cut(s)	864, 884
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	444, 894, 966
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	3 cut(s)	444, 894, 966
HaeIII	GGCC	3 cut(s)	138, 415, 1212
HapII	CCGG	2 cut(s)	50, 216
Hin1II	CATG	5 cut(s)	88, 165, 553, 1039, 1247
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	5 cut(s)	203, 640, 997, 1057, 1121
HpaII	CCGG	2 cut(s)	50, 216
HphI	GGTGA	2 cut(s)	73, 155
Hpy166II	GTNNAC	2 cut(s)	342, 344
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	6 cut(s)	458, 485, 509, 518, 857, 1202
Hpy8I	GTNNAC	2 cut(s)	342, 344
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	3 cut(s)	827, 892, 1233
HpyCH4III	ACNGT	4 cut(s)	67, 143, 544, 1150
HpyCH4IV	ACGT	2 cut(s)	593, 1010
HpyCH4V	TGCA	7 cut(s)	94, 275, 443, 530, 617, 968, 1005
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 266, 412, 521, 623, 1011
HpyF3I	CTNAG	1 cut(s)	1026
HpySE526I	ACGT	2 cut(s)	593, 1010
Hsp92II	CATG	5 cut(s)	88, 165, 553, 1039, 1247
Kzo9I	GATC	5 cut(s)	112, 292, 475, 505, 716
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	3 cut(s)	455, 905, 952
LweI	GCATC	3 cut(s)	181, 862, 942
MabI	ACCWGGT	2 cut(s)	769, 1138
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	2 cut(s)	593, 1010
MaeIII	GTNAC	5 cut(s)	143, 793, 800, 1144, 1187
MalI	GATC	5 cut(s)	114, 294, 477, 507, 718
MboI	GATC	5 cut(s)	112, 292, 475, 505, 716
MboII	GAAGA	5 cut(s)	200, 619, 622, 1171, 1217
MfeI	CAATTG	2 cut(s)	333, 351
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	2 cut(s)	45, 1016
MluCI	AATT	6 cut(s)	22, 333, 351, 897, 906, 1197
MmeI	TCCRAC	4 cut(s)	755, 767, 902, 1132
MseI	TTAA	3 cut(s)	225, 990, 1224
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	2 cut(s)	50, 216
MspR9I	CCNGG	4 cut(s)	417, 567, 771, 1140
MunI	CAATTG	2 cut(s)	333, 351
MvaI	CCWGG	4 cut(s)	417, 567, 771, 1140
MwoI	GCNNNNNNNGC	6 cut(s)	191, 266, 412, 521, 623, 1011
NcoI	CCATGG	1 cut(s)	549
NdeI	CATATG	1 cut(s)	974
NdeII	GATC	5 cut(s)	112, 292, 475, 505, 716
NlaIII	CATG	5 cut(s)	88, 165, 553, 1039, 1247
NlaIV	GGNNCC	2 cut(s)	54, 1033
NmuCI	GTSAC	4 cut(s)	143, 800, 1144, 1187
NspI	RCATGY	1 cut(s)	1247
PaeI	GCATGC	1 cut(s)	1247
PfeI	GAWTC	5 cut(s)	203, 640, 997, 1057, 1121
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	445, 895, 967
Ppu21I	YACGTR	1 cut(s)	1011
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	4 cut(s)	415, 565, 769, 1138
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	4 cut(s)	415, 565, 769, 1138
PspN4I	GGNNCC	2 cut(s)	54, 1033
PspPI	GGNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	970
PsuI	RGATCY	1 cut(s)	716
RsaI	GTAC	4 cut(s)	343, 363, 768, 1134
RsaNI	GTAC	4 cut(s)	342, 362, 767, 1133
RseI	CAYNNNNRTG	1 cut(s)	89
Rsr2I	CGGWCCG	1 cut(s)	213
RsrII	CGGWCCG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	225, 990, 1224
SatI	GCNGC	3 cut(s)	444, 894, 966
Sau3AI	GATC	5 cut(s)	112, 292, 475, 505, 716
Sau96I	GGNCC	1 cut(s)	213
ScaI	AGTACT	1 cut(s)	1134
ScrFI	CCNGG	4 cut(s)	417, 567, 771, 1140
SduI	GDGCHC	2 cut(s)	45, 1016
SexAI	ACCWGGT	2 cut(s)	769, 1138
SfaNI	GCATC	3 cut(s)	181, 862, 942
SfcI	CTRYAG	1 cut(s)	966
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	89
SpeI	ACTAGT	1 cut(s)	173
SphI	GCATGC	1 cut(s)	1247
Sse9I	AATT	6 cut(s)	22, 333, 351, 897, 906, 1197
SsiI	CCGC	3 cut(s)	153, 240, 1171
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	4 cut(s)	415, 565, 769, 1138
StyI	CCWWGG	4 cut(s)	116, 410, 549, 1213
TaaI	ACNGT	4 cut(s)	67, 143, 544, 1150
TaiI	ACGT	2 cut(s)	596, 1013
TaqI	TCGA	3 cut(s)	70, 858, 1071
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	6 cut(s)	22, 333, 351, 897, 906, 1197
TatI	WGTACW	2 cut(s)	341, 1132
TfiI	GAWTC	5 cut(s)	203, 640, 997, 1057, 1121
Tru1I	TTAA	3 cut(s)	225, 990, 1224
Tru9I	TTAA	3 cut(s)	225, 990, 1224
TseFI	GTSAC	4 cut(s)	143, 800, 1144, 1187
TseI	GCWGC	3 cut(s)	443, 893, 965
Tsp45I	GTSAC	4 cut(s)	143, 800, 1144, 1187
TspDTI	ATGAA	5 cut(s)	447, 549, 672, 851, 874
TspGWI	ACGGA	1 cut(s)	884
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	1247
XcmI	CCANNNNNNNNNTGG	2 cut(s)	492, 1042
XspI	CTAG	1 cut(s)	174
ZrmI	AGTACT	1 cut(s)	1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.