Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Forward (+)

8267336 .. 8268448

Gene Structure 1113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGATAATGCAAAATCTCAACAAAGATGATGAAAGGTCTGTCATTCCTTTAGGCCACGGTGACCCCTCCGCTTTCCCATGCTTTCGGACTAGTATTTCAGCCGAAGATGCCATCGTTGATTCTGTTCGGTCCGGCAAGTTTAACTGCTATTCTCCCGCAGTTGGTATTCTACCAGCAAGGAGGGCTATTGCAGATTATCTGTCAAATGATCTCCCATATAAGTTATCGCCTGACGATGTTTATCTTACAATTGGGTGTACACAAGCAATTGAAGTGGTACTGACAGCTATATCCCTGTCAAATCCTGTTGCCAACATTCTGCTTCCAAGGCCAGGCTTCCCTTACTATGAAACTCGTGCAGCCTGTTCCAATCTGGAAGTTCGTCGCTATGATCTGCTTCCGGAACAGGGTTGGGAGGTTGATCTTGAAACTCTTGAAGCACTTGCAGATGAAAATACTGTTGCCATGGTCATCATCAATCCTGGAAATCCTTGTGGAAATGTTTATACGTCTCAACATTTGAAGAAGATTGCTGAGACGGCAAGGAAGCTTGGGATTCTTGTAATTGCCGATGAAGTGTATGACCATCTTACTTTCGCAAATACCCCATTTGTGCCAATGGGGACATTTGGATCTGTTGTCCCAGTTCTTACACTTGGTTCTATATTAAAGAGATGGATTGTACCTGGTTGGAGACTTTGTTGGATTGTTACCTGTGACCCCAACGCAATTCTTCAAAAGTCGGGGATTATGAAGTCCATTACAGGATGTCTCGAAGTCTCAACGGATGCTCCAACCTTCATTCAGGCAGCAATTCCTCAAATTATAGAGAATACAAAGGAGGATTTCTTTTTGAAAATAGTTGAGATGCTACGAGGTGCTGCAGACTTATGTTTTGATAAACTTAATGAGATTCCTTGCATTACGTGCCCAAGCAAACCTGAGGGTTCCATGTTTGTAATGGTAAAGCTGAATATCTCATTATTCGATGACATTAGTGATGATGTTGAGTTCAGCCTCAAACTTGCCAAAGAGGAATCTGTCATAGTACTACCTGGTGATCAATGGTTTGAGATGATGGACGATCGTGGATCGTATTTTGGGCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

370

Amino Acids

40.87

Weight (kDa)

4.59

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	14 - 354	5.2e-43	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	2 cut(s)	69, 156
AclWI	GGATC	2 cut(s)	640, 1099
AfaI	GTAC	4 cut(s)	259, 279, 684, 1050
AfiI	CCNNNNNNNGG	3 cut(s)	161, 332, 407
AgsI	TTSAA	6 cut(s)	272, 428, 437, 523, 737, 856
AhlI	ACTAGT	1 cut(s)	89
AjnI	CCWGG	4 cut(s)	331, 481, 685, 1054
AluBI	AGCT	3 cut(s)	287, 550, 970
AluI	AGCT	3 cut(s)	287, 550, 970
Alw26I	GTCTC	5 cut(s)	516, 530, 688, 776, 784
AlwI	GGATC	2 cut(s)	640, 1099
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	2 cut(s)	52, 329
ApeKI	GCWGC	4 cut(s)	359, 809, 881, 1105
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	71, 1070
AvaII	GGWCC	1 cut(s)	129
AxyI	CCTNAGG	1 cut(s)	942
BaeGI	GKGCMC	1 cut(s)	932
BauI	CACGAG	1 cut(s)	354
BbvI	GCAGC	4 cut(s)	371, 821, 868, 1092
BccI	CCATC	4 cut(s)	119, 594, 669, 1072
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	4 cut(s)	333, 483, 687, 1056
BclI	TGATCA	1 cut(s)	1060
BcoDI	GTCTC	5 cut(s)	516, 530, 688, 776, 784
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	882
BisI	GCNGC	4 cut(s)	360, 810, 882, 1106
BlsI	GCNGC	4 cut(s)	361, 811, 883, 1107
BmcAI	AGTACT	1 cut(s)	1050
Bme1390I	CCNGG	4 cut(s)	333, 483, 687, 1056
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	949
BmrFI	CCNGG	4 cut(s)	333, 483, 687, 1056
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	3 cut(s)	97, 778, 858
BmuI	ACTGGG	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	927
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	55, 326, 465
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	4 cut(s)	685, 715, 775, 805
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 332, 407
Bse1I	ACTGG	1 cut(s)	644
Bse21I	CCTNAGG	1 cut(s)	942
Bse8I	GATNNNNATC	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	4 cut(s)	333, 483, 687, 1056
BseDI	CCNNGG	3 cut(s)	55, 326, 465
BseGI	GGATG	2 cut(s)	773, 793
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	3 cut(s)	161, 332, 407
BseMII	CTCAG	2 cut(s)	525, 933
BseNI	ACTGG	1 cut(s)	644
BseSI	GKGCMC	1 cut(s)	932
BseXI	GCAGC	4 cut(s)	371, 821, 868, 1092
BsgI	GTGCAG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	1087
BshFI	GGCC	2 cut(s)	54, 331
BsiEI	CGRYCG	1 cut(s)	1087
BsiSI	CCGG	2 cut(s)	132, 401
BslFI	GGGAC	2 cut(s)	626, 637
BslI	CCNNNNNNNGG	3 cut(s)	161, 332, 407
BsmAI	GTCTC	5 cut(s)	516, 530, 688, 776, 784
BsmBI	CGTCTC	2 cut(s)	516, 530
BsmFI	GGGAC	2 cut(s)	626, 637
BsnI	GGCC	2 cut(s)	54, 331
Bsp1286I	GDGCHC	1 cut(s)	932
Bsp13I	TCCGGA	1 cut(s)	400
Bsp1407I	TGTACA	1 cut(s)	257
Bsp143I	GATC	7 cut(s)	208, 391, 421, 632, 1060, 1084, 1091
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	2 cut(s)	69, 156
BspANI	GGCC	2 cut(s)	54, 331
BspCNI	CTCAG	2 cut(s)	526, 934
BspEI	TCCGGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	949
BspMAI	CTGCAG	1 cut(s)	886
BspPI	GGATC	2 cut(s)	640, 1099
BsrGI	TGTACA	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	3 cut(s)	55, 326, 465
BssMI	GATC	7 cut(s)	208, 391, 421, 632, 1060, 1084, 1091
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	326, 465
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	4 cut(s)	333, 483, 687, 1056
Bst4CI	ACNGT	2 cut(s)	59, 460
BstAPI	GCANNNNNTGC	1 cut(s)	927
BstAUI	TGTACA	1 cut(s)	257
BstBAI	YACGTR	1 cut(s)	927
BstDEI	CTNAG	2 cut(s)	534, 942
BstDSI	CCRYGG	2 cut(s)	55, 465
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	773, 793
BstKTI	GATC	7 cut(s)	211, 394, 424, 635, 1063, 1087, 1094
BstMAI	GTCTC	5 cut(s)	516, 530, 688, 776, 784
BstMBI	GATC	7 cut(s)	208, 391, 421, 632, 1060, 1084, 1091
BstMCI	CGRYCG	1 cut(s)	1087
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 182, 328, 539, 927
BstNI	CCWGG	4 cut(s)	333, 483, 687, 1056
BstPI	GGTNACC	1 cut(s)	59
BstSCI	CCNGG	4 cut(s)	331, 481, 685, 1054
BstSFI	CTRYAG	1 cut(s)	882
BstSLI	GKGCMC	1 cut(s)	932
BstV1I	GCAGC	4 cut(s)	371, 821, 868, 1092
BstX2I	RGATCY	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	632
Bsu36I	CCTNAGG	1 cut(s)	942
BsuRI	GGCC	2 cut(s)	54, 331
BtgI	CCRYGG	2 cut(s)	55, 465
BtsCI	GGATG	2 cut(s)	773, 793
Cfr13I	GGNCC	1 cut(s)	129
CpoI	CGGWCCG	1 cut(s)	129
CsiI	ACCWGGT	2 cut(s)	685, 1054
Csp6I	GTAC	4 cut(s)	258, 278, 683, 1049
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CspI	CGGWCCG	1 cut(s)	129
CviAII	CATG	3 cut(s)	78, 466, 952
CviQI	GTAC	4 cut(s)	258, 278, 683, 1049
DdeI	CTNAG	2 cut(s)	534, 942
DpnI	GATC	7 cut(s)	210, 393, 423, 634, 1062, 1086, 1093
DpnII	GATC	7 cut(s)	208, 391, 421, 632, 1060, 1084, 1091
Eco130I	CCWWGG	2 cut(s)	326, 465
Eco47I	GGWCC	1 cut(s)	129
Eco81I	CCTNAGG	1 cut(s)	942
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoRII	CCWGG	4 cut(s)	331, 481, 685, 1054
EcoT14I	CCWWGG	2 cut(s)	326, 465
ErhI	CCWWGG	2 cut(s)	326, 465
Esp3I	CGTCTC	2 cut(s)	516, 530
FaeI	CATG	3 cut(s)	81, 469, 955
FaqI	GGGAC	2 cut(s)	626, 637
FatI	CATG	3 cut(s)	77, 465, 951
FauI	CCCGC	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	1060
Fnu4HI	GCNGC	4 cut(s)	360, 810, 882, 1106
FokI	GGATG	2 cut(s)	780, 800
Fsp4HI	GCNGC	4 cut(s)	360, 810, 882, 1106
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	4 cut(s)	360, 810, 882, 1106
HaeIII	GGCC	2 cut(s)	54, 331
HapII	CCGG	2 cut(s)	132, 401
Hin1II	CATG	3 cut(s)	81, 469, 955
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	4 cut(s)	119, 556, 913, 1037
HpaII	CCGG	2 cut(s)	132, 401
HphI	GGTGA	2 cut(s)	71, 1070
Hpy166II	GTNNAC	2 cut(s)	258, 260
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	5 cut(s)	374, 401, 425, 434, 773
Hpy8I	GTNNAC	2 cut(s)	258, 260
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	1 cut(s)	808
HpyCH4III	ACNGT	2 cut(s)	59, 460
HpyCH4IV	ACGT	2 cut(s)	509, 926
HpyCH4V	TGCA	6 cut(s)	10, 191, 359, 446, 884, 921
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 182, 328, 539, 927
HpyF3I	CTNAG	2 cut(s)	534, 942
HpySE526I	ACGT	2 cut(s)	509, 926
Hsp92II	CATG	3 cut(s)	81, 469, 955
Kpn2I	TCCGGA	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	1060
Kzo9I	GATC	7 cut(s)	208, 391, 421, 632, 1060, 1084, 1091
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	4 cut(s)	371, 821, 868, 1092
LweI	GCATC	3 cut(s)	97, 778, 858
MabI	ACCWGGT	2 cut(s)	685, 1054
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	2 cut(s)	509, 926
MaeIII	GTNAC	3 cut(s)	59, 709, 716
MalI	GATC	7 cut(s)	210, 393, 423, 634, 1062, 1086, 1093
MboI	GATC	7 cut(s)	208, 391, 421, 632, 1060, 1084, 1091
MboII	GAAGA	4 cut(s)	116, 535, 538, 725
MfeI	CAATTG	2 cut(s)	249, 267
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	1 cut(s)	932
MluCI	AATT	6 cut(s)	249, 267, 564, 729, 813, 822
MmeI	TCCRAC	3 cut(s)	671, 683, 818
MnlI	CCTC	9 cut(s)	76, 174, 409, 828, 835, 869, 937, 1027, 1028
MroI	TCCGGA	1 cut(s)	400
MseI	TTAA	3 cut(s)	141, 668, 906
MspI	CCGG	2 cut(s)	132, 401
MspR9I	CCNGG	4 cut(s)	333, 483, 687, 1056
MunI	CAATTG	2 cut(s)	249, 267
MvaI	CCWGG	4 cut(s)	333, 483, 687, 1056
MwoI	GCNNNNNNNGC	5 cut(s)	107, 182, 328, 539, 927
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	7 cut(s)	208, 391, 421, 632, 1060, 1084, 1091
NlaIII	CATG	3 cut(s)	81, 469, 955
NlaIV	GGNNCC	1 cut(s)	949
NmuCI	GTSAC	2 cut(s)	59, 716
PfeI	GAWTC	4 cut(s)	119, 556, 913, 1037
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	361, 811, 883, 1107
Ple19I	CGATCG	1 cut(s)	1087
Ppu21I	YACGTR	1 cut(s)	927
Psp6I	CCWGG	4 cut(s)	331, 481, 685, 1054
PspEI	GGTNACC	1 cut(s)	59
PspGI	CCWGG	4 cut(s)	331, 481, 685, 1054
PspN4I	GGNNCC	1 cut(s)	949
PspPI	GGNCC	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	886
PsuI	RGATCY	1 cut(s)	632
PvuI	CGATCG	1 cut(s)	1087
RsaI	GTAC	4 cut(s)	259, 279, 684, 1050
RsaNI	GTAC	4 cut(s)	258, 278, 683, 1049
Rsr2I	CGGWCCG	1 cut(s)	129
RsrII	CGGWCCG	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	141, 668, 906
SatI	GCNGC	4 cut(s)	360, 810, 882, 1106
Sau3AI	GATC	7 cut(s)	208, 391, 421, 632, 1060, 1084, 1091
Sau96I	GGNCC	1 cut(s)	129
ScaI	AGTACT	1 cut(s)	1050
ScrFI	CCNGG	4 cut(s)	333, 483, 687, 1056
SduI	GDGCHC	1 cut(s)	932
SexAI	ACCWGGT	2 cut(s)	685, 1054
SfaNI	GCATC	3 cut(s)	97, 778, 858
SfcI	CTRYAG	1 cut(s)	882
SinI	GGWCC	1 cut(s)	129
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	6 cut(s)	249, 267, 564, 729, 813, 822
SsiI	CCGC	2 cut(s)	69, 156
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	4 cut(s)	331, 481, 685, 1054
StyI	CCWWGG	2 cut(s)	326, 465
TaaI	ACNGT	2 cut(s)	59, 460
TaiI	ACGT	2 cut(s)	512, 929
TaqI	TCGA	2 cut(s)	774, 987
TaqII	GACCGA	1 cut(s)	117
TasI	AATT	6 cut(s)	249, 267, 564, 729, 813, 822
TatI	WGTACW	2 cut(s)	257, 1048
TfiI	GAWTC	4 cut(s)	119, 556, 913, 1037
Tru1I	TTAA	3 cut(s)	141, 668, 906
Tru9I	TTAA	3 cut(s)	141, 668, 906
TseFI	GTSAC	2 cut(s)	59, 716
TseI	GCWGC	4 cut(s)	359, 809, 881, 1105
Tsp45I	GTSAC	2 cut(s)	59, 716
TspDTI	ATGAA	6 cut(s)	45, 363, 465, 588, 767, 790
TspGWI	ACGGA	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	958
XspI	CTAG	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.