Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Forward (+)

29394547 .. 29402600

Gene Structure 8054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0274600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3288 bp

ATGGACACAAGAGGGAGACTTGTTGCTGGTTCTCACAACAGGAATGAGTTTATTCTCATCAATGCAGATGAGGCTTCAAGGATAAAGTCTGTGGAAGAACTGAGTGGACAAATATGTCAGATTTGTGGTGATGGGATTGAGATTACAGATGATGGAGAGATCTTTGTAGCCTGCAATGAATGTGCCTTCCCTGTATGTAGAGCTTGTTATCAGTATGAAAGAAAAGAGGGAAATCAGGCTTGTCCCCAGTGTAAAACCAGATACAAGCGCATCAAAGGTACTCCTAGGGTTGAAGGTGATGAAGAGGAAGATGATATCGATGATTTGTACAATGAGTTTTGTTATGGGAATCTTGATGCTTTGGGCTCACATCAAGTTGCTGAGGCTGTGCTGTCTTCACACCTTAATGTTGGTCGCGGTTCCCACTATAATGCCAGAATTCCCACACACACAGAACATGATTCCTCAACTCTGGGTTCTGAAATCCCACTCTTGACCTATGGCGAGGAGGATTCTGAGATATCTTCTGATCGACATGCGCTTATTGTACCTCCATATATGGGTCATGGGAACAGAGTCCATCCTGTGCCTTTTCCTGATTCATCTCCTTTGCAACCTAGACCAATGGTTCCTAAGAAAGACATTTCAGTATATGGGTATGGGAGCGTGGCTTGGAAAGATCGAATGGAAGAGTGGAAGAAAAAGCAAAATGACAAACTTCAGGTGGTAAAGCATGAAGGAGATAATGGTGGTGGAAACTTTGGTGGAAAGGAAGATGATGTTGATTTGCCCATGATGGATGAAGGCAGGCAGCCACTTTCAAGAAAGATACCCATCCCTTCAAGCAAGATAAACCCATACAGAATGATAATAATACTCCGACTTGTAATCCTTGGCTTCTTTTTCCATTATAGAATTCTCAATCCAGTGAAAGATGCATATGGCTTGTGGTTGACGTCAGTCATATGCGAGATATGGTTTGCTGTTTCATGGATTCTGGATCAGTTCCCCAAATGGTATCCAATAGAACGAGAAACGTACCTAGATCGCCTATCGCTGAGGTATGAAAAGGAAGGGAAACCATCTGAACTAGCGAGTATAGACATCTTTGTTAGTACAGTCGACCCTACGAAAGAACCTCCACTAATCACTGCGAACACGGTCCTTTCCATCCTTGCTGTCGATTATCCAGTTGATAAAGTTGCATGTTATGTCTCGGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCTGAGACAGCTGAGTTTTCCAGGAGATGGGTCCCTTTTTGTAAGAAATATAGCATTGAGCCTCGAGCCCCAGAATGGTACTTCTGTCAGAAGATTGACTATTTGAAAAATAAGGTTCATCCTGAATTTGTTAGGGAAAGGCGTGCAATGAAGAGAGACTATGAAGAATTTAAAGTTAGGATTAATAGTTTGGTTGCCATGGCACAAAAGGTTCCGGAGGATGGTTGGACAATGCAGGATGGTACTCCCTGGCCTGGGAACAATGTACGAGACCATCCTGGCATGATTCAGGTCTTTCTGGGTAACAATGGTTTTCGTGATGATGAAGGAAATGAGTTACCTCGTCTGATTTATGTTTCTCGTGAAAAGAGACCAGGATTTGATCACCATAAAAAGGCGGGTGCCATGAATGCTCTGATGCGGGTCTCTGCCGTCATCTCTAATGCTCCTTATCTTCTGAATGTTGACTGTGATCACTACATCAACAATAGCAAGGCCCTCAGAGAAGCCATGTGCTTCATGATGGACCCTACATCAGGGAAGAAAGTTTGCTATGTGCAGTTTCCCCAAAGATTTGATGGGATTGATCGTCACGATAGATACTCAAATCGGAATGTTGTATTCTTTGATATCAATATGAAAGGATTAGATGGTATACAAGGGCCAATATATGTTGGAACTGGGTGTGTTTTCAGAAGGCAAGCTCTTTATGGGTTTGATGCACCTGCCTCAAAGAAACCCCCTAGCAGAACCTGCAATTGCTGGCCAAAATGGTGCTGCCTGTGTTGTGGGTCAAGAAAAAACAAGAACGCAAAGTCAAAGAAAGAGAAAAAGAAGAAATCGAAACAGAGAGAAGCATCAAAGCAGATACATGCTGTTGAAAATATTGAAGAGGGAATTGAAGAACCAATCTCTGATAAATCTTCCCATATGTCCCAACTGAAATTGGAGAAGAAATTTGGGCAATCTCCTGTCTTCGTAGCCTCTGCAGTACTGGAGGATGGTGGAATTCCTCAGGACGTTAGTCCTGCATCTCTCTTGAGAGAAGCCATCCAAGTCATAAGCTGTGGTTATGAAGATAAAACAGAATGGGGAAAGGAAGTTGGCTGGATATATGGTAGTGTTACTGAGGATATTCTGACAGGATTTAAGATGCATTGCCATGGCTGGAGATCTGTTTACTGCATACCCAAGTTACCTGCTTTCAAAGGGTCAGCTCCTATTAATCTGTCAGATCGTCTCCACCAAGTTCTGCGGTGGGCACTTGGATCGGTTGAGATTTTCTTGAGTAGACATTGCCCAATCTGGTATGGATATGGGAGTGGGTTGAAATCTTTGGAGCGGTTTTCGTATATCAACTCAGTTGTATATCCTTGGACCTCCATTCCTTTGATCGTTTACTGTAGTCTGCCTGCCATCTGTCTTCTGACTGGGAAATTCATTGTCCCCGAGATAAGCAACTATGCAAGTCTTGTTTTCATGGCTCTCTTCTTATCCATAGCTGCCACCAGCATCCTCGAGATGCAATGGGGCGGTGTTGGGATAGATGACTGGTGGAGAAATGAGCAGTTTTGGGTAATTGGAGGTGCTTCATCGCATCTATTTGCTCTCTTTCAGGGTCTACTCAAGGTTTTGGCTGGTGTTAACACAAACTTCACAGTTACATCTAAGGCAGCAGATGATGGAGCATTTTCCGAACTTTACATCTTCAAGTGGACATCATTGTTGATCCCTCCTATGACTTTATTAATAATAAACATAGTGGGGGTCATCGTTGGTATTTCAGATGCCATCAATAACGGGTATGATTCATGGGGTCCATTGTTCGGCAGACTATTTTTCGCCTTCTGGGTCATTATGCACCTCTACCCCTTCCTCAAGGGATTACTGGGTAAACAAGATCGTATGCCCACCATTATTTTGGTTTGGTCCATCCTGCTATCATCAATATTAACTCTTATGTGGGTTCGAATAAATCCATTTGTCTCAAGGGATGGCCCTGTTTTGGAGGTTTGCGGGCTAAATTGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

1095

Amino Acids

123.88

Weight (kDa)

6.52

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	29 - 105	2e-40	Zinc-binding RING-finger
Cellulose_synt	PF03552	367 - 1083	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	785 - 917	1.7e-06	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1987
AasI	GACNNNNNNGTC	1 cut(s)	114
AatII	GACGTC	1 cut(s)	959
Acc36I	ACCTGC	3 cut(s)	1987, 2015, 2461
AccB1I	GGYRCC	1 cut(s)	1655
AccB7I	CCANNNNNTGG	1 cut(s)	1281
AccBSI	CCGCTC	1 cut(s)	2596
AccI	GTMKAC	4 cut(s)	1122, 1909, 2545, 2875
AccII	CGCG	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	1468
AciI	CCGC	7 cut(s)	417, 1652, 1675, 2509, 2596, 2787, 3270
AclWI	GGATC	3 cut(s)	1008, 2530, 2977
AcoI	YGGCCR	1 cut(s)	2018
AcsI	RAATTY	7 cut(s)	438, 915, 1379, 1421, 2210, 2262, 2690
AcuI	CTGAAG	1 cut(s)	704
AcyI	GRCGYC	1 cut(s)	956
AfaI	GTAC	9 cut(s)	280, 329, 549, 1040, 1117, 1334, 1498, 1521, 2247
AjnI	CCWGG	5 cut(s)	1274, 1502, 1507, 1531, 1627
AluBI	AGCT	6 cut(s)	203, 1265, 1958, 2319, 2471, 2756
AluI	AGCT	6 cut(s)	203, 1265, 1958, 2319, 2471, 2756
Alw26I	GTCTC	9 cut(s)	10, 1219, 1253, 1404, 1518, 1618, 1684, 2498, 3244
AlwI	GGATC	3 cut(s)	1008, 2530, 2977
AlwNI	CAGNNNCTG	1 cut(s)	2007
Ama87I	CYCGRG	3 cut(s)	1317, 2702, 2771
Aor13HI	TCCGGA	1 cut(s)	1468
AoxI	GGCC	5 cut(s)	1505, 1749, 1916, 2018, 3250
ApeKI	GCWGC	5 cut(s)	811, 1229, 2031, 2756, 2927
ApoI	RAATTY	7 cut(s)	438, 915, 1379, 1421, 2210, 2262, 2690
AseI	ATTAAT	3 cut(s)	1437, 2478, 3002
AspA2I	CCTAGG	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	270, 541
AspS9I	GGNCC	9 cut(s)	1162, 1285, 1750, 1780, 1916, 2631, 3071, 3183, 3251
AsuHPI	GGTGA	3 cut(s)	140, 308, 1631
AsuII	TTCGAA	1 cut(s)	3223
AvaI	CYCGRG	3 cut(s)	1317, 2702, 2771
AvaII	GGWCC	6 cut(s)	1162, 1285, 1780, 2631, 3071, 3183
AvrII	CCTAGG	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	2268
BaeGI	GKGCMC	1 cut(s)	2518
BaeI	ACNNNNGTAYC	2 cut(s)	1324, 1357
BalI	TGGCCA	1 cut(s)	2020
BanI	GGYRCC	1 cut(s)	1655
BanII	GRGCYC	2 cut(s)	368, 1324
BauI	CACGAG	1 cut(s)	1614
BbsI	GAAGAC	3 cut(s)	387, 2221, 2669
BbvCI	CCTCAGC	2 cut(s)	381, 1058
BbvI	GCAGC	5 cut(s)	823, 1216, 2018, 2743, 2939
BceAI	ACGGC	1 cut(s)	1670
BcgI	CGANNNNNNTGC	2 cut(s)	2505, 2539
BciT130I	CCWGG	5 cut(s)	1276, 1504, 1509, 1533, 1629
BciVI	GTATCC	1 cut(s)	1029
BclI	TGATCA	2 cut(s)	1636, 1726
BcoDI	GTCTC	9 cut(s)	10, 1219, 1253, 1404, 1518, 1618, 1684, 2498, 3244
BfaI	CTAG	5 cut(s)	285, 618, 1043, 1091, 1998
BfmI	CTRYAG	2 cut(s)	2241, 2656
BfuAI	ACCTGC	3 cut(s)	1987, 2015, 2461
BfuI	GTATCC	1 cut(s)	1029
BglII	AGATCT	2 cut(s)	159, 2426
BisI	GCNGC	5 cut(s)	812, 1230, 2032, 2757, 2928
BlnI	CCTAGG	1 cut(s)	284
BlsI	GCNGC	5 cut(s)	813, 1231, 2033, 2758, 2929
BmcAI	AGTACT	1 cut(s)	2247
Bme1390I	CCNGG	5 cut(s)	1276, 1504, 1509, 1533, 1629
Bme18I	GGWCC	6 cut(s)	1162, 1285, 1780, 2631, 3071, 3183
BmeT110I	CYCGRG	3 cut(s)	1317, 2702, 2771
BmgT120I	GGNCC	9 cut(s)	1162, 1285, 1750, 1780, 1916, 2631, 3071, 3183, 3251
BmiI	GGNNCC	8 cut(s)	421, 630, 1286, 1287, 1467, 1657, 1782, 3072
BmrFI	CCNGG	5 cut(s)	1276, 1504, 1509, 1533, 1629
BmrI	ACTGGG	4 cut(s)	241, 1944, 2694, 3152
BmuI	ACTGGG	4 cut(s)	241, 1944, 2694, 3152
BoxI	GACNNNNGTC	2 cut(s)	959, 2277
BpiI	GAAGAC	3 cut(s)	387, 2221, 2669
BpmI	CTGGAG	2 cut(s)	2270, 2443
Bpu10I	CCTNAGC	2 cut(s)	381, 1058
Bpu14I	TTCGAA	1 cut(s)	3223
BpuEI	CTTGAG	5 cut(s)	2314, 2560, 2864, 3116, 3226
Bsa29I	ATCGAT	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	833
BsaHI	GRCGYC	1 cut(s)	956
BsaI	GGTCTC	3 cut(s)	1518, 1618, 1684
BsaJI	CCNNGG	7 cut(s)	284, 892, 1452, 1502, 1508, 2416, 2627
BsaWI	WCCGGW	1 cut(s)	1468
Bse1I	ACTGG	8 cut(s)	247, 926, 1190, 1939, 2253, 2689, 2810, 3147
Bse21I	CCTNAGG	1 cut(s)	2268
Bse3DI	GCAATG	5 cut(s)	181, 1407, 2410, 2548, 2786
Bse8I	GATNNNNATC	1 cut(s)	833
BseAI	TCCGGA	1 cut(s)	1468
BseBI	CCWGG	5 cut(s)	1276, 1504, 1509, 1533, 1629
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	7 cut(s)	284, 892, 1452, 1502, 1508, 2416, 2627
BseJI	GATNNNNATC	1 cut(s)	833
BseMI	GCAATG	5 cut(s)	181, 1407, 2410, 2548, 2786
BseNI	ACTGG	8 cut(s)	247, 926, 1190, 1939, 2253, 2689, 2810, 3147
BseRI	GAGGAG	1 cut(s)	521
BseSI	GKGCMC	1 cut(s)	2518
BseXI	GCAGC	5 cut(s)	823, 1216, 2018, 2743, 2939
BsgI	GTGCAG	1 cut(s)	1832
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	5 cut(s)	1507, 1751, 1918, 2020, 3252
BshNI	GGYRCC	1 cut(s)	1655
BshVI	ATCGAT	1 cut(s)	318
BsiHKCI	CYCGRG	3 cut(s)	1317, 2702, 2771
BsiSI	CCGG	1 cut(s)	1469
BslFI	GGGAC	4 cut(s)	228, 1271, 2173, 2684
BsmAI	GTCTC	9 cut(s)	10, 1219, 1253, 1404, 1518, 1618, 1684, 2498, 3244
BsmBI	CGTCTC	1 cut(s)	2498
BsmFI	GGGAC	4 cut(s)	228, 1271, 2173, 2684
BsmI	GAATGC	1 cut(s)	1669
BsnI	GGCC	5 cut(s)	1507, 1751, 1918, 2020, 3252
Bso31I	GGTCTC	3 cut(s)	1518, 1618, 1684
BsoBI	CYCGRG	3 cut(s)	1317, 2702, 2771
Bsp119I	TTCGAA	1 cut(s)	3223
Bsp1286I	GDGCHC	3 cut(s)	368, 1324, 2518
Bsp13I	TCCGGA	1 cut(s)	1468
Bsp1407I	TGTACA	1 cut(s)	327
Bsp19I	CCATGG	2 cut(s)	1452, 2416
BspACI	CCGC	7 cut(s)	417, 1652, 1675, 2509, 2596, 2787, 3270
BspANI	GGCC	5 cut(s)	1507, 1751, 1918, 2020, 3252
BspDI	ATCGAT	1 cut(s)	318
BspEI	TCCGGA	1 cut(s)	1468
BspFNI	CGCG	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	1773
BspLI	GGNNCC	8 cut(s)	421, 630, 1286, 1287, 1467, 1657, 1782, 3072
BspMAI	CTGCAG	1 cut(s)	2245
BspMI	ACCTGC	3 cut(s)	1987, 2015, 2461
BspPI	GGATC	3 cut(s)	1008, 2530, 2977
BspT104I	TTCGAA	1 cut(s)	3223
BspT107I	GGYRCC	1 cut(s)	1655
BspTNI	GGTCTC	3 cut(s)	1518, 1618, 1684
BsrBI	CCGCTC	1 cut(s)	2596
BsrDI	GCAATG	5 cut(s)	181, 1407, 2410, 2548, 2786
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	8 cut(s)	247, 926, 1190, 1939, 2253, 2689, 2810, 3147
BssECI	CCNNGG	7 cut(s)	284, 892, 1452, 1502, 1508, 2416, 2627
BssNAI	GTATAC	1 cut(s)	1910
BssNI	GRCGYC	1 cut(s)	956
BssSI	CACGAG	1 cut(s)	1614
BssT1I	CCWWGG	5 cut(s)	284, 892, 1452, 2416, 2627
Bst1107I	GTATAC	1 cut(s)	1910
Bst2BI	CACGAG	1 cut(s)	1614
Bst2UI	CCWGG	5 cut(s)	1276, 1504, 1509, 1533, 1629
Bst4CI	ACNGT	5 cut(s)	1120, 1162, 1724, 2657, 2914
Bst6I	CTCTTC	5 cut(s)	297, 684, 1400, 2139, 2747
BstACI	GRCGYC	1 cut(s)	956
BstAPI	GCANNNNNTGC	1 cut(s)	2007
BstAUI	TGTACA	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	3223
BstC8I	GCNNGC	7 cut(s)	172, 809, 1398, 1956, 2018, 2667, 3272
BstDSI	CCRYGG	2 cut(s)	1452, 2416
BstENI	CCTNNNNNAGG	1 cut(s)	1788
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	2 cut(s)	270, 541
BstMAI	GTCTC	9 cut(s)	10, 1219, 1253, 1404, 1518, 1618, 1684, 2498, 3244
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 1664, 2007
BstNI	CCWGG	5 cut(s)	1276, 1504, 1509, 1533, 1629
BstNSI	RCATGY	3 cut(s)	539, 1209, 2129
BstPAI	GACNNNNGTC	2 cut(s)	959, 2277
BstSCI	CCNGG	5 cut(s)	1274, 1502, 1507, 1531, 1627
BstSFI	CTRYAG	2 cut(s)	2241, 2656
BstSLI	GKGCMC	1 cut(s)	2518
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	5 cut(s)	823, 1216, 2018, 2743, 2939
BstV2I	GAAGAC	3 cut(s)	387, 2221, 2669
BstX2I	RGATCY	2 cut(s)	159, 2426
BstXI	CCANNNNNNTGG	1 cut(s)	3175
BstYI	RGATCY	2 cut(s)	159, 2426
BstZ17I	GTATAC	1 cut(s)	1910
Bsu15I	ATCGAT	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	2268
BsuI	GTATCC	1 cut(s)	1029
BsuRI	GGCC	5 cut(s)	1507, 1751, 1918, 2020, 3252
BsuTUI	ATCGAT	1 cut(s)	318
BtgI	CCRYGG	2 cut(s)	1452, 2416
BtgZI	GCGATG	1 cut(s)	2832
BtsI	GCAGTG	1 cut(s)	1149
BtsIMutI	CAGTG	3 cut(s)	254, 933, 1149
BveI	ACCTGC	3 cut(s)	1987, 2015, 2461
Cac8I	GCNNGC	7 cut(s)	172, 809, 1398, 1956, 2018, 2667, 3272
CaiI	CAGNNNCTG	1 cut(s)	2007
CciI	TCATGA	1 cut(s)	1773
CfoI	GCGC	2 cut(s)	270, 541
Cfr13I	GGNCC	9 cut(s)	1162, 1285, 1750, 1780, 1916, 2631, 3071, 3183, 3251
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	9 cut(s)	279, 328, 548, 1039, 1116, 1333, 1497, 1520, 2246
CviQI	GTAC	9 cut(s)	279, 328, 548, 1039, 1116, 1333, 1497, 1520, 2246
DraI	TTTAAA	1 cut(s)	1426
DrdI	GACNNNNNNGTC	1 cut(s)	114
DseDI	GACNNNNNNGTC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	2018
Eam1104I	CTCTTC	5 cut(s)	297, 684, 1400, 2139, 2747
EarI	CTCTTC	5 cut(s)	297, 684, 1400, 2139, 2747
Eco130I	CCWWGG	5 cut(s)	284, 892, 1452, 2416, 2627
Eco24I	GRGCYC	2 cut(s)	368, 1324
Eco31I	GGTCTC	3 cut(s)	1518, 1618, 1684
Eco32I	GATATC	3 cut(s)	316, 522, 1885
Eco47I	GGWCC	6 cut(s)	1162, 1285, 1780, 2631, 3071, 3183
Eco57I	CTGAAG	1 cut(s)	704
Eco81I	CCTNAGG	1 cut(s)	2268
Eco88I	CYCGRG	3 cut(s)	1317, 2702, 2771
EcoNI	CCTNNNNNAGG	1 cut(s)	1788
EcoO109I	RGGNCCY	2 cut(s)	1285, 1750
EcoRI	GAATTC	3 cut(s)	438, 915, 2262
EcoRII	CCWGG	5 cut(s)	1274, 1502, 1507, 1531, 1627
EcoRV	GATATC	3 cut(s)	316, 522, 1885
EcoT14I	CCWWGG	5 cut(s)	284, 892, 1452, 2416, 2627
EcoT22I	ATGCAT	2 cut(s)	940, 2412
EcoT38I	GRGCYC	2 cut(s)	368, 1324
ErhI	CCWWGG	5 cut(s)	284, 892, 1452, 2416, 2627
Esp3I	CGTCTC	1 cut(s)	2498
FaqI	GGGAC	4 cut(s)	228, 1271, 2173, 2684
FauI	CCCGC	3 cut(s)	1645, 1668, 3263
FauNDI	CATATG	3 cut(s)	940, 965, 2184
FbaI	TGATCA	2 cut(s)	1636, 1726
FblI	GTMKAC	4 cut(s)	1122, 1909, 2545, 2875
Fnu4HI	GCNGC	5 cut(s)	812, 1230, 2032, 2757, 2928
FriOI	GRGCYC	2 cut(s)	368, 1324
Fsp4HI	GCNGC	5 cut(s)	812, 1230, 2032, 2757, 2928
FspBI	CTAG	5 cut(s)	285, 618, 1043, 1091, 1998
GlaI	GCGC	2 cut(s)	269, 540
GluI	GCNGC	5 cut(s)	812, 1230, 2032, 2757, 2928
GsuI	CTGGAG	2 cut(s)	2270, 2443
HaeIII	GGCC	5 cut(s)	1507, 1751, 1918, 2020, 3252
HapII	CCGG	1 cut(s)	1469
HhaI	GCGC	2 cut(s)	270, 541
Hin1I	GRCGYC	1 cut(s)	956
Hin6I	GCGC	2 cut(s)	268, 539
HinP1I	GCGC	2 cut(s)	268, 539
HincII	GTYRAC	4 cut(s)	954, 1123, 1720, 2899
HindII	GTYRAC	4 cut(s)	954, 1123, 1720, 2899
HinfI	GANTC	8 cut(s)	349, 461, 512, 576, 599, 994, 1540, 3062
HpaI	GTTAAC	1 cut(s)	2899
HpaII	CCGG	1 cut(s)	1469
HphI	GGTGA	3 cut(s)	140, 308, 1631
HpyCH4III	ACNGT	5 cut(s)	1120, 1162, 1724, 2657, 2914
HpyCH4IV	ACGT	3 cut(s)	956, 1037, 2274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 1664, 2007
HpySE526I	ACGT	3 cut(s)	956, 1037, 2274
Hsp92I	GRCGYC	1 cut(s)	956
HspAI	GCGC	2 cut(s)	268, 539
KflI	GGGWCCC	1 cut(s)	1285
Kpn2I	TCCGGA	1 cut(s)	1468
Ksp22I	TGATCA	2 cut(s)	1636, 1726
KspAI	GTTAAC	1 cut(s)	2899
LmnI	GCTCC	5 cut(s)	663, 1705, 2476, 2593, 2939
Lsp1109I	GCAGC	5 cut(s)	823, 1216, 2018, 2743, 2939
MaeI	CTAG	5 cut(s)	285, 618, 1043, 1091, 1998
MaeII	ACGT	3 cut(s)	956, 1037, 2274
MaeIII	GTNAC	6 cut(s)	1556, 1590, 1844, 2377, 2448, 2914
MbiI	CCGCTC	1 cut(s)	2596
MfeI	CAATTG	1 cut(s)	2011
MflI	RGATCY	2 cut(s)	159, 2426
MhlI	GDGCHC	3 cut(s)	368, 1324, 2518
MlsI	TGGCCA	1 cut(s)	2020
MluNI	TGGCCA	1 cut(s)	2020
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	3 cut(s)	904, 1460, 1909
Mox20I	TGGCCA	1 cut(s)	2020
Mph1103I	ATGCAT	2 cut(s)	940, 2412
MroI	TCCGGA	1 cut(s)	1468
MscI	TGGCCA	1 cut(s)	2020
MseI	TTAA	8 cut(s)	405, 1425, 1437, 2403, 2478, 2898, 3002, 3206
MslI	CAYNNNNRTG	3 cut(s)	405, 429, 2415
Msp20I	TGGCCA	1 cut(s)	2020
MspA1I	CMGCKG	1 cut(s)	1265
MspI	CCGG	1 cut(s)	1469
MspR9I	CCNGG	5 cut(s)	1276, 1504, 1509, 1533, 1629
MunI	CAATTG	1 cut(s)	2011
Mva1269I	GAATGC	1 cut(s)	1669
MvaI	CCWGG	5 cut(s)	1276, 1504, 1509, 1533, 1629
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	71, 1664, 2007
NcoI	CCATGG	2 cut(s)	1452, 2416
NdeI	CATATG	3 cut(s)	940, 965, 2184
NlaIV	GGNNCC	8 cut(s)	421, 630, 1286, 1287, 1467, 1657, 1782, 3072
NmuCI	GTSAC	1 cut(s)	1844
NsiI	ATGCAT	2 cut(s)	940, 2412
NspI	RCATGY	3 cut(s)	539, 1209, 2129
NspV	TTCGAA	1 cut(s)	3223
PaeR7I	CTCGAG	2 cut(s)	1317, 2771
PagI	TCATGA	1 cut(s)	1773
PaqCI	CACCTGC	1 cut(s)	1987
PctI	GAATGC	1 cut(s)	1669
PfeI	GAWTC	7 cut(s)	349, 461, 512, 599, 994, 1540, 3062
PflMI	CCANNNNNTGG	1 cut(s)	1281
PfoI	TCCNGGA	1 cut(s)	1274
PkrI	GCNGC	5 cut(s)	813, 1231, 2033, 2758, 2929
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	1285
PshAI	GACNNNNGTC	2 cut(s)	959, 2277
PshBI	ATTAAT	3 cut(s)	1437, 2478, 3002
Psp5II	RGGWCCY	1 cut(s)	1285
Psp6I	CCWGG	5 cut(s)	1274, 1502, 1507, 1531, 1627
PspGI	CCWGG	5 cut(s)	1274, 1502, 1507, 1531, 1627
PspN4I	GGNNCC	8 cut(s)	421, 630, 1286, 1287, 1467, 1657, 1782, 3072
PspPI	GGNCC	9 cut(s)	1162, 1285, 1750, 1780, 1916, 2631, 3071, 3183, 3251
PspPPI	RGGWCCY	1 cut(s)	1285
PspXI	VCTCGAGB	1 cut(s)	1317
PstI	CTGCAG	1 cut(s)	2245
PstNI	CAGNNNCTG	1 cut(s)	2007
PsuI	RGATCY	2 cut(s)	159, 2426
PvuII	CAGCTG	1 cut(s)	1265
RsaI	GTAC	9 cut(s)	280, 329, 549, 1040, 1117, 1334, 1498, 1521, 2247
RsaNI	GTAC	9 cut(s)	279, 328, 548, 1039, 1116, 1333, 1497, 1520, 2246
RseI	CAYNNNNRTG	3 cut(s)	405, 429, 2415
SalI	GTCGAC	1 cut(s)	1121
SaqAI	TTAA	8 cut(s)	405, 1425, 1437, 2403, 2478, 2898, 3002, 3206
SatI	GCNGC	5 cut(s)	812, 1230, 2032, 2757, 2928
Sau96I	GGNCC	9 cut(s)	1162, 1285, 1750, 1780, 1916, 2631, 3071, 3183, 3251
ScaI	AGTACT	1 cut(s)	2247
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	5 cut(s)	1276, 1504, 1509, 1533, 1629
SduI	GDGCHC	3 cut(s)	368, 1324, 2518
SfcI	CTRYAG	2 cut(s)	2241, 2656
Sfr274I	CTCGAG	2 cut(s)	1317, 2771
SfuI	TTCGAA	1 cut(s)	3223
SinI	GGWCC	6 cut(s)	1162, 1285, 1780, 2631, 3071, 3183
SlaI	CTCGAG	2 cut(s)	1317, 2771
SmiMI	CAYNNNNRTG	3 cut(s)	405, 429, 2415
SmlI	CTYRAG	7 cut(s)	1317, 2293, 2539, 2771, 2879, 3131, 3241
SmoI	CTYRAG	7 cut(s)	1317, 2293, 2539, 2771, 2879, 3131, 3241
SsiI	CCGC	7 cut(s)	417, 1652, 1675, 2509, 2596, 2787, 3270
SspI	AATATT	2 cut(s)	2140, 3204
SspMI	CTAG	5 cut(s)	285, 618, 1043, 1091, 1998
StyD4I	CCNGG	5 cut(s)	1274, 1502, 1507, 1531, 1627
StyI	CCWWGG	5 cut(s)	284, 892, 1452, 2416, 2627
TaaI	ACNGT	5 cut(s)	1120, 1162, 1724, 2657, 2914
TaiI	ACGT	3 cut(s)	959, 1040, 2277
TaqI	TCGA	9 cut(s)	318, 532, 682, 1122, 1182, 1318, 2096, 2772, 3223
TatI	WGTACW	3 cut(s)	327, 1115, 2245
TfiI	GAWTC	7 cut(s)	349, 461, 512, 599, 994, 1540, 3062
Tru1I	TTAA	8 cut(s)	405, 1425, 1437, 2403, 2478, 2898, 3002, 3206
Tru9I	TTAA	8 cut(s)	405, 1425, 1437, 2403, 2478, 2898, 3002, 3206
TscAI	CASTG	3 cut(s)	254, 933, 1156
TseFI	GTSAC	1 cut(s)	1844
TseI	GCWGC	5 cut(s)	811, 1229, 2031, 2756, 2927
Tsp45I	GTSAC	1 cut(s)	1844
TspRI	CASTG	3 cut(s)	254, 933, 1156
Van91I	CCANNNNNTGG	1 cut(s)	1281
VpaK11BI	GGWCC	6 cut(s)	1162, 1285, 1780, 2631, 3071, 3183
VspI	ATTAAT	3 cut(s)	1437, 2478, 3002
XagI	CCTNNNNNAGG	1 cut(s)	1788
XapI	RAATTY	7 cut(s)	438, 915, 1379, 1421, 2210, 2262, 2690
XceI	RCATGY	3 cut(s)	539, 1209, 2129
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1829, 3172
XhoI	CTCGAG	2 cut(s)	1317, 2771
XmaJI	CCTAGG	1 cut(s)	284
XmiI	GTMKAC	4 cut(s)	1122, 1909, 2545, 2875
XspI	CTAG	5 cut(s)	285, 618, 1043, 1091, 1998
ZraI	GACGTC	1 cut(s)	957
ZrmI	AGTACT	1 cut(s)	2247
Zsp2I	ATGCAT	2 cut(s)	940, 2412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.