Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Forward (+)

8213672 .. 8215099

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCCGGCTTTGAGGCTCACGCTAATCTTGGGTGAGGAAGAAGCAGAGAAGCGTAGAAGTGAGAGTATGGCAGGTTGGGAGGTTGATCTTGAAACTCTTGAAGCACTTGCAGATGAAAATACTGTTGCCATGGTCATCATCAATCCTGGAAATCCTTGTGGAAATGTTTATACGTCTCAACATTTGAAGAAGATTGCTGAGACGGCAAGGAAGCTTGGGATTCTTGTAATTGCCGATGAAGTGTATGACCATCTTACTTTCGCAAATACCCCATTTGTGCCAATGGGGACATTTGGATCTGTTGTCCCAGTTCTTACACTTGGTTCTATATTAAAGAGATGGATTGTACCTGGTTGGAGACTTTGTTGGATTGTTACCTGTGACCCCAACGCAATTCTTCAAAAGTCGGGGATTATGAAGTCCATTACAGGATGTCTCGAAGTCTCAACGGATGCTCCAACCTTCATTCAGGCAGCAATTCCTCAAATTATAGAGAATACAAAGGAGGATTTCTTTTTGAAAATAGTTGAGATGCTACGAGGTGCTGCAGACTTATGTTTTGATAAACTTAATGAGATTCCTTGCATTACGTGCCCAAGCAAACCTGAGGGTTCCATGTTTGTAATGGTAAAGCTGAATATCTCATTATTCGATGACATTAGTGATGATGTTGAGTTCAGCCTCAAACTTGCCAAAGAGGAATCTGTCATAGTACTACCTGGTGATCAATGGTTTGAGATGATGGACGATCGTGGATCGTATTTTGGGCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

258

Amino Acids

28.62

Weight (kDa)

4.56

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	22 - 242	3.8e-26	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	62
AclWI	GGATC	2 cut(s)	304, 763
AfaI	GTAC	2 cut(s)	348, 714
AgsI	TTSAA	5 cut(s)	92, 101, 187, 401, 520
AjnI	CCWGG	3 cut(s)	145, 349, 718
AluBI	AGCT	2 cut(s)	214, 634
AluI	AGCT	2 cut(s)	214, 634
Alw26I	GTCTC	5 cut(s)	180, 194, 352, 440, 448
AlwI	GGATC	2 cut(s)	304, 763
ApeKI	GCWGC	3 cut(s)	473, 545, 769
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AsuHPI	GGTGA	2 cut(s)	44, 734
AxyI	CCTNAGG	1 cut(s)	606
BaeGI	GKGCMC	1 cut(s)	596
BbvI	GCAGC	3 cut(s)	485, 532, 756
BccI	CCATC	3 cut(s)	258, 333, 736
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	3 cut(s)	147, 351, 720
BclI	TGATCA	1 cut(s)	724
BcoDI	GTCTC	5 cut(s)	180, 194, 352, 440, 448
BfmI	CTRYAG	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	62
BisI	GCNGC	3 cut(s)	474, 546, 770
BlsI	GCNGC	3 cut(s)	475, 547, 771
BmcAI	AGTACT	1 cut(s)	714
Bme1390I	CCNGG	3 cut(s)	147, 351, 720
BmiI	GGNNCC	1 cut(s)	613
BmrFI	CCNGG	3 cut(s)	147, 351, 720
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	2 cut(s)	442, 522
BmuI	ACTGGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	591
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	4 cut(s)	349, 379, 439, 469
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	308
Bse21I	CCTNAGG	1 cut(s)	606
BseBI	CCWGG	3 cut(s)	147, 351, 720
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	437, 457
BseMII	CTCAG	2 cut(s)	189, 597
BseNI	ACTGG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	596
BseXI	GCAGC	3 cut(s)	485, 532, 756
Bsh1285I	CGRYCG	1 cut(s)	751
BsiEI	CGRYCG	1 cut(s)	751
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	290, 301
BsmAI	GTCTC	5 cut(s)	180, 194, 352, 440, 448
BsmBI	CGTCTC	2 cut(s)	180, 194
BsmFI	GGGAC	2 cut(s)	290, 301
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	5 cut(s)	85, 296, 724, 748, 755
Bsp19I	CCATGG	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	190, 598
BspLI	GGNNCC	1 cut(s)	613
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	304, 763
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	5 cut(s)	85, 296, 724, 748, 755
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	147, 351, 720
Bst4CI	ACNGT	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	591
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	198, 606
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	437, 457
BstKTI	GATC	5 cut(s)	88, 299, 727, 751, 758
BstMAI	GTCTC	5 cut(s)	180, 194, 352, 440, 448
BstMBI	GATC	5 cut(s)	85, 296, 724, 748, 755
BstMCI	CGRYCG	1 cut(s)	751
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 591
BstNI	CCWGG	3 cut(s)	147, 351, 720
BstSCI	CCNGG	3 cut(s)	145, 349, 718
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	596
BstV1I	GCAGC	3 cut(s)	485, 532, 756
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
Bsu36I	CCTNAGG	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	437, 457
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	4
CsiI	ACCWGGT	2 cut(s)	349, 718
Csp6I	GTAC	2 cut(s)	347, 713
CviAII	CATG	2 cut(s)	130, 616
CviJI	RGCY	6 cut(s)	8, 16, 214, 634, 681, 769
CviKI_1	RGCY	6 cut(s)	8, 16, 214, 634, 681, 769
CviQI	GTAC	2 cut(s)	347, 713
DdeI	CTNAG	2 cut(s)	198, 606
DpnI	GATC	5 cut(s)	87, 298, 726, 750, 757
DpnII	GATC	5 cut(s)	85, 296, 724, 748, 755
Eco130I	CCWWGG	1 cut(s)	129
Eco81I	CCTNAGG	1 cut(s)	606
EcoRII	CCWGG	3 cut(s)	145, 349, 718
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	2 cut(s)	180, 194
FaeI	CATG	2 cut(s)	133, 619
FaqI	GGGAC	2 cut(s)	290, 301
FatI	CATG	2 cut(s)	129, 615
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	3 cut(s)	474, 546, 770
FokI	GGATG	2 cut(s)	444, 464
Fsp4HI	GCNGC	3 cut(s)	474, 546, 770
GluI	GCNGC	3 cut(s)	474, 546, 770
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	2 cut(s)	133, 619
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	3 cut(s)	220, 577, 701
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	44, 734
Hpy188III	TCNNGA	3 cut(s)	89, 98, 437
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	2 cut(s)	173, 590
HpyCH4V	TGCA	3 cut(s)	110, 548, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 591
HpyF3I	CTNAG	2 cut(s)	198, 606
HpySE526I	ACGT	2 cut(s)	173, 590
Hsp92II	CATG	2 cut(s)	133, 619
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	5 cut(s)	85, 296, 724, 748, 755
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	3 cut(s)	485, 532, 756
LweI	GCATC	2 cut(s)	442, 522
MabI	ACCWGGT	2 cut(s)	349, 718
MaeII	ACGT	2 cut(s)	173, 590
MaeIII	GTNAC	2 cut(s)	373, 380
MalI	GATC	5 cut(s)	87, 298, 726, 750, 757
MboI	GATC	5 cut(s)	85, 296, 724, 748, 755
MboII	GAAGA	4 cut(s)	50, 199, 202, 389
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	4 cut(s)	228, 393, 477, 486
MmeI	TCCRAC	3 cut(s)	335, 347, 482
MnlI	CCTC	9 cut(s)	6, 28, 73, 492, 499, 533, 601, 691, 692
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	2 cut(s)	332, 570
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	3 cut(s)	147, 351, 720
MvaI	CCWGG	3 cut(s)	147, 351, 720
MwoI	GCNNNNNNNGC	2 cut(s)	203, 591
NaeI	GCCGGC	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	5 cut(s)	85, 296, 724, 748, 755
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	133, 619
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	380
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	220, 577, 701
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	475, 547, 771
Ple19I	CGATCG	1 cut(s)	751
Ppu21I	YACGTR	1 cut(s)	591
Psp6I	CCWGG	3 cut(s)	145, 349, 718
PspGI	CCWGG	3 cut(s)	145, 349, 718
PspN4I	GGNNCC	1 cut(s)	613
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	296
PvuI	CGATCG	1 cut(s)	751
RsaI	GTAC	2 cut(s)	348, 714
RsaNI	GTAC	2 cut(s)	347, 713
SaqAI	TTAA	2 cut(s)	332, 570
SatI	GCNGC	3 cut(s)	474, 546, 770
Sau3AI	GATC	5 cut(s)	85, 296, 724, 748, 755
ScaI	AGTACT	1 cut(s)	714
ScrFI	CCNGG	3 cut(s)	147, 351, 720
SduI	GDGCHC	1 cut(s)	596
SexAI	ACCWGGT	2 cut(s)	349, 718
SfaNI	GCATC	2 cut(s)	442, 522
SfcI	CTRYAG	1 cut(s)	546
Sse9I	AATT	4 cut(s)	228, 393, 477, 486
StyD4I	CCNGG	3 cut(s)	145, 349, 718
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	2 cut(s)	176, 593
TaqI	TCGA	2 cut(s)	438, 651
TasI	AATT	4 cut(s)	228, 393, 477, 486
TatI	WGTACW	1 cut(s)	712
TfiI	GAWTC	3 cut(s)	220, 577, 701
Tru1I	TTAA	2 cut(s)	332, 570
Tru9I	TTAA	2 cut(s)	332, 570
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	3 cut(s)	473, 545, 769
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	4 cut(s)	129, 252, 431, 454
TspGWI	ACGGA	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
ZrmI	AGTACT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.