Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002811.1

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Forward (+)

31579 .. 34069

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002811.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atggaaaacaagtggaattttcaggggaatggagagctcaagctggcaccggcacccaggattcgaggagttctcagcatgataatgcaaaatctcaacaaagatgaccaaaggactaccattcctttaggcatcggtgacccctccgctttcccatgctttcggactagcatttcagccgaagatgccatcgttgaatctgttcggtcgggcaagtttaactgctattctccctcaattggtattctaccagcaaggagggcaattgcagattatctgtcaaatgatctcccatacaagttatcgcctgacgatgtttatgttacaagtggatgtacgcatgcaattgaaatggttctgacagctatatctctgtcaagtcctgttgccaacattctgcttccaaggcctggcttcactttctatgacactcgggcagcctattccaatctggaagttcgccgatatgatctgcttccagaaaagggttgggaggttgatcttgaagctcttgaggcactggcagatgaatatactgttgccatggtcatcatcaatcctggaaatccttgtggaagtgtttatacgtctcaacatttgaagaagattgcagagacagcgaggaagcttgggattcttgtaattgctgatgaagtgtataaccatcttactttcggaagcactccatttgtgccaatggggacatttggatctattgtcccagttcttacacttggttctatatcaaagagatggattgtacctggttggagacttggttggattgccatctgtgaccccaatgcaattcttcaaaattcggggattataaagtccattacaggatgtctcgaagtctcatcggatgctccaaccttcattcaggcagcaattcctcaaattatagagcacacaaaggaggatttctttttgaaaatagttgagatgctaagaggtgctgcagtcatatgttttgataaacttaacgagattccctgcattacgtgcccaagcaaacctgagggttccatgtttgtaatggcaaagctgaatctctcattgttggatgaaattagtgatgatgttgagttcagcctcaaacttgccaaagaggaatctgtcatagtactacctggtgtggctgttgggttgaagaactggttgcggataacgttcgcttgtgaccattcaagtcttgaagatggccttgggaggattaaaggcttctgtgaaaggcatgccaagaaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

417

Amino Acids

45.78

Weight (kDa)

5.53

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	830
AccB1I	GGYRCC	2 cut(s)	46, 52
AccB7I	CCANNNNNTGG	1 cut(s)	410
AciI	CCGC	2 cut(s)	147, 1165
AclI	AACGTT	1 cut(s)	1172
AclWI	GGATC	1 cut(s)	718
AcsI	RAATTY	2 cut(s)	16, 817
AfaI	GTAC	3 cut(s)	337, 762, 1128
AfiI	CCNNNNNNNGG	3 cut(s)	239, 410, 485
AgsI	TTSAA	9 cut(s)	197, 350, 506, 601, 815, 934, 1153, 1191, 1199
AjnI	CCWGG	5 cut(s)	56, 409, 559, 763, 1132
AjuI	GAANNNNNNNTTGG	2 cut(s)	1191, 1223
AluBI	AGCT	6 cut(s)	37, 43, 365, 509, 628, 1048
AluI	AGCT	6 cut(s)	37, 43, 365, 509, 628, 1048
Alw21I	GWGCWC	2 cut(s)	39, 912
Alw26I	GTCTC	5 cut(s)	594, 608, 766, 854, 862
AlwI	GGATC	1 cut(s)	718
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	2 cut(s)	407, 1204
ApeKI	GCWGC	3 cut(s)	437, 887, 959
ApoI	RAATTY	2 cut(s)	16, 817
Asp700I	GAANNNNTTC	2 cut(s)	201, 354
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	432
AxyI	CCTNAGG	1 cut(s)	1020
BaeGI	GKGCMC	1 cut(s)	1010
BanI	GGYRCC	2 cut(s)	46, 52
BanII	GRGCYC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	568, 600
Bbv12I	GWGCWC	2 cut(s)	39, 912
BbvI	GCAGC	3 cut(s)	449, 899, 946
BccI	CCATC	5 cut(s)	197, 672, 747, 797, 1196
BciT130I	CCWGG	5 cut(s)	58, 411, 561, 765, 1134
BcoDI	GTCTC	5 cut(s)	594, 608, 766, 854, 862
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	960
BisI	GCNGC	3 cut(s)	438, 888, 960
BlsI	GCNGC	3 cut(s)	439, 889, 961
BmcAI	AGTACT	1 cut(s)	1128
Bme1390I	CCNGG	5 cut(s)	58, 411, 561, 765, 1134
BmeT110I	CYCGRG	1 cut(s)	432
BmiI	GGNNCC	3 cut(s)	48, 54, 1027
BmrFI	CCNGG	5 cut(s)	58, 411, 561, 765, 1134
BmrI	ACTGGG	1 cut(s)	716
BmsI	GCATC	4 cut(s)	141, 175, 856, 936
BmuI	ACTGGG	1 cut(s)	716
BplI	GAGNNNNNCTC	2 cut(s)	57, 89
BpuEI	CTTGAG	2 cut(s)	23, 533
BsaAI	YACGTR	1 cut(s)	1005
BsaBI	GATNNNNATC	1 cut(s)	788
BsaJI	CCNNGG	4 cut(s)	56, 404, 543, 1207
BsaXI	ACNNNNNCTCC	2 cut(s)	763, 793
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 410, 485
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	3 cut(s)	525, 722, 1163
Bse21I	CCTNAGG	1 cut(s)	1020
Bse8I	GATNNNNATC	1 cut(s)	788
BseBI	CCWGG	5 cut(s)	58, 411, 561, 765, 1134
BseDI	CCNNGG	4 cut(s)	56, 404, 543, 1207
BseGI	GGATG	4 cut(s)	338, 851, 871, 1072
BseJI	GATNNNNATC	1 cut(s)	788
BseLI	CCNNNNNNNGG	3 cut(s)	239, 410, 485
BseMII	CTCAG	2 cut(s)	88, 1011
BseNI	ACTGG	3 cut(s)	525, 722, 1163
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	1010
BseXI	GCAGC	3 cut(s)	449, 899, 946
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	409, 1206
BshNI	GGYRCC	2 cut(s)	46, 52
BsiEI	CGRYCG	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	39, 912
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	2 cut(s)	704, 715
BslI	CCNNNNNNNGG	3 cut(s)	239, 410, 485
BsmAI	GTCTC	5 cut(s)	594, 608, 766, 854, 862
BsmBI	CGTCTC	1 cut(s)	594
BsmFI	GGGAC	2 cut(s)	704, 715
BsnI	GGCC	2 cut(s)	409, 1206
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	3 cut(s)	39, 912, 1010
Bsp143I	GATC	4 cut(s)	286, 469, 499, 710
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	2 cut(s)	147, 1165
BspANI	GGCC	2 cut(s)	409, 1206
BspCNI	CTCAG	2 cut(s)	87, 1012
BspLI	GGNNCC	3 cut(s)	48, 54, 1027
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	1 cut(s)	718
BspT107I	GGYRCC	2 cut(s)	46, 52
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	3 cut(s)	525, 722, 1163
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	4 cut(s)	56, 404, 543, 1207
BssMI	GATC	4 cut(s)	286, 469, 499, 710
BssT1I	CCWWGG	3 cut(s)	404, 543, 1207
Bst2UI	CCWGG	5 cut(s)	58, 411, 561, 765, 1134
Bst4CI	ACNGT	1 cut(s)	538
BstAPI	GCANNNNNTGC	1 cut(s)	1005
BstBAI	YACGTR	1 cut(s)	1005
BstC8I	GCNNGC	3 cut(s)	45, 342, 1239
BstDEI	CTNAG	3 cut(s)	74, 950, 1020
BstDSI	CCRYGG	1 cut(s)	543
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	4 cut(s)	338, 851, 871, 1072
BstKTI	GATC	4 cut(s)	289, 472, 502, 713
BstMAI	GTCTC	5 cut(s)	594, 608, 766, 854, 862
BstMBI	GATC	4 cut(s)	286, 469, 499, 710
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 260, 406, 515, 617, 1005
BstNI	CCWGG	5 cut(s)	58, 411, 561, 765, 1134
BstNSI	RCATGY	2 cut(s)	344, 1241
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	5 cut(s)	56, 409, 559, 763, 1132
BstSFI	CTRYAG	1 cut(s)	960
BstSLI	GKGCMC	1 cut(s)	1010
BstV1I	GCAGC	3 cut(s)	449, 899, 946
BstX2I	RGATCY	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	710
Bsu36I	CCTNAGG	1 cut(s)	1020
BsuRI	GGCC	2 cut(s)	409, 1206
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	4 cut(s)	338, 851, 871, 1072
BtsIMutI	CAGTG	1 cut(s)	518
Cac8I	GCNNGC	3 cut(s)	45, 342, 1239
Cfr10I	RCCGGY	1 cut(s)	49
CsiI	ACCWGGT	2 cut(s)	763, 1132
Csp6I	GTAC	3 cut(s)	336, 761, 1127
CviAII	CATG	6 cut(s)	79, 156, 341, 544, 1030, 1238
CviQI	GTAC	3 cut(s)	336, 761, 1127
DdeI	CTNAG	3 cut(s)	74, 950, 1020
DpnI	GATC	4 cut(s)	288, 471, 501, 712
DpnII	GATC	4 cut(s)	286, 469, 499, 710
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	404, 543, 1207
Eco147I	AGGCCT	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
Eco81I	CCTNAGG	1 cut(s)	1020
Eco88I	CYCGRG	1 cut(s)	432
Eco91I	GGTNACC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	5 cut(s)	56, 409, 559, 763, 1132
EcoT14I	CCWWGG	3 cut(s)	404, 543, 1207
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	404, 543, 1207
Esp3I	CGTCTC	1 cut(s)	594
FaeI	CATG	6 cut(s)	82, 159, 344, 547, 1033, 1241
FalI	AAGNNNNNCTT	2 cut(s)	1191, 1223
FaqI	GGGAC	2 cut(s)	704, 715
FatI	CATG	6 cut(s)	78, 155, 340, 543, 1029, 1237
FauNDI	CATATG	1 cut(s)	968
Fnu4HI	GCNGC	3 cut(s)	438, 888, 960
FokI	GGATG	4 cut(s)	345, 858, 878, 1079
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	438, 888, 960
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	3 cut(s)	438, 888, 960
HaeIII	GGCC	2 cut(s)	409, 1206
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	6 cut(s)	82, 159, 344, 547, 1033, 1241
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	6 cut(s)	61, 197, 634, 991, 1051, 1115
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	4 cut(s)	165, 360, 677, 865
Hpy188III	TCNNGA	6 cut(s)	452, 479, 503, 512, 851, 1196
HpyAV	CCTTC	1 cut(s)	886
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	3 cut(s)	587, 1004, 1172
HpyCH4V	TGCA	7 cut(s)	88, 269, 344, 611, 806, 962, 999
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 260, 406, 515, 617, 1005
HpyF3I	CTNAG	3 cut(s)	74, 950, 1020
HpySE526I	ACGT	3 cut(s)	587, 1004, 1172
Hsp92II	CATG	6 cut(s)	82, 159, 344, 547, 1033, 1241
Kzo9I	GATC	4 cut(s)	286, 469, 499, 710
LmnI	GCTCC	1 cut(s)	874
Lsp1109I	GCAGC	3 cut(s)	449, 899, 946
LweI	GCATC	4 cut(s)	141, 175, 856, 936
MabI	ACCWGGT	2 cut(s)	763, 1132
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	3 cut(s)	587, 1004, 1172
MaeIII	GTNAC	4 cut(s)	137, 322, 794, 1181
MalI	GATC	4 cut(s)	288, 471, 501, 712
MboI	GATC	4 cut(s)	286, 469, 499, 710
MboII	GAAGA	6 cut(s)	194, 613, 616, 803, 1165, 1211
MfeI	CAATTG	3 cut(s)	237, 264, 345
MflI	RGATCY	1 cut(s)	710
MhlI	GDGCHC	3 cut(s)	39, 912, 1010
MmeI	TCCRAC	4 cut(s)	749, 761, 896, 1044
MroXI	GAANNNNTTC	2 cut(s)	201, 354
MseI	TTAA	3 cut(s)	219, 984, 1218
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	5 cut(s)	58, 411, 561, 765, 1134
MunI	CAATTG	3 cut(s)	237, 264, 345
MvaI	CCWGG	5 cut(s)	58, 411, 561, 765, 1134
MwoI	GCNNNNNNNGC	6 cut(s)	185, 260, 406, 515, 617, 1005
NcoI	CCATGG	1 cut(s)	543
NdeI	CATATG	1 cut(s)	968
NdeII	GATC	4 cut(s)	286, 469, 499, 710
NlaIII	CATG	6 cut(s)	82, 159, 344, 547, 1033, 1241
NlaIV	GGNNCC	3 cut(s)	48, 54, 1027
NmuCI	GTSAC	3 cut(s)	137, 794, 1181
NspI	RCATGY	2 cut(s)	344, 1241
PaeI	GCATGC	2 cut(s)	344, 1241
PceI	AGGCCT	1 cut(s)	409
PdmI	GAANNNNTTC	2 cut(s)	201, 354
PfeI	GAWTC	6 cut(s)	61, 197, 634, 991, 1051, 1115
PflMI	CCANNNNNTGG	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	439, 889, 961
Ppu21I	YACGTR	1 cut(s)	1005
PsiI	TTATAA	1 cut(s)	830
Psp124BI	GAGCTC	1 cut(s)	39
Psp1406I	AACGTT	1 cut(s)	1172
Psp6I	CCWGG	5 cut(s)	56, 409, 559, 763, 1132
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	5 cut(s)	56, 409, 559, 763, 1132
PspN4I	GGNNCC	3 cut(s)	48, 54, 1027
PstI	CTGCAG	1 cut(s)	964
PsuI	RGATCY	1 cut(s)	710
RsaI	GTAC	3 cut(s)	337, 762, 1128
RsaNI	GTAC	3 cut(s)	336, 761, 1127
RseI	CAYNNNNRTG	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	219, 984, 1218
SatI	GCNGC	3 cut(s)	438, 888, 960
Sau3AI	GATC	4 cut(s)	286, 469, 499, 710
ScaI	AGTACT	1 cut(s)	1128
ScrFI	CCNGG	5 cut(s)	58, 411, 561, 765, 1134
SduI	GDGCHC	3 cut(s)	39, 912, 1010
SexAI	ACCWGGT	2 cut(s)	763, 1132
SfaNI	GCATC	4 cut(s)	141, 175, 856, 936
SfcI	CTRYAG	1 cut(s)	960
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	38, 512
SmoI	CTYRAG	2 cut(s)	38, 512
SphI	GCATGC	2 cut(s)	344, 1241
SseBI	AGGCCT	1 cut(s)	409
SsiI	CCGC	2 cut(s)	147, 1165
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	39
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	5 cut(s)	56, 409, 559, 763, 1132
StyI	CCWWGG	3 cut(s)	404, 543, 1207
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	3 cut(s)	590, 1007, 1175
TaqI	TCGA	2 cut(s)	64, 852
TaqII	GACCGA	1 cut(s)	195
TatI	WGTACW	1 cut(s)	1126
TfiI	GAWTC	6 cut(s)	61, 197, 634, 991, 1051, 1115
Tru1I	TTAA	3 cut(s)	219, 984, 1218
Tru9I	TTAA	3 cut(s)	219, 984, 1218
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	3 cut(s)	137, 794, 1181
TseI	GCWGC	3 cut(s)	437, 887, 959
Tsp45I	GTSAC	3 cut(s)	137, 794, 1181
TspDTI	ATGAA	4 cut(s)	543, 666, 868, 1083
TspRI	CASTG	1 cut(s)	525
Van91I	CCANNNNNTGG	1 cut(s)	410
XapI	RAATTY	2 cut(s)	16, 817
XceI	RCATGY	2 cut(s)	344, 1241
XcmI	CCANNNNNNNNNTGG	2 cut(s)	486, 1036
XmnI	GAANNNNTTC	2 cut(s)	201, 354
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.