MD17G1234900.v1.1

Aminotransferase class I and II

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
28374537 .. 28377973
3437 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1234900.v1.1.491

Sequence Viewer

Length: 1272 bp
ATGGTGGAGAAAGAGTCGAAGAAGAAGTGGAATTTTGAGGGGAATTTCCATGGAGAGCAAAAAACGGCATCACCACCAATCACAGTTCGAGGAATCCTGTACATGATAATGCGAAGTCTCAACAAAGATGACGACAGGCCAATCATTCCTCTTGGTCACGGTGACCCCTCCGCCTTCCCATGCTTCCGAACTAGTGCTGCAGCTGAAGACGCCGTCGTCGACGCCCTTCGCTCCGCCCGCTATAACTCTTACTCTCCCACCGTTGGTATTCTACCGGCAAGAAGGGCCATTGCTGGTTACCTCTCCCATGACCTCCCGTACAACCTATCACCGGACGATGTTTATCTTACAGTTGGATGTTCAAATGCGATTGAAGTCATCATAGAAGCTCTTGCACGTCCGGGTGCCAACATTTTGGTTCCGAGGCCAGGCTTCCCTTACTATGATGTTCGGGCGGCCTGTTCCAATCTCGAAGTCCGTCATTATGATCTCCTTCCGGACAAGGGCTGGGAGGTTGATCTCGAAGCTGTTGAAGCACTTTCGGATGAAAATACTGTTGCCATGGTGATCATCAATCCTGGCAATCCTTGTGGAAATGTACACTCACCTCAACACTTGGAGAAGATTGCGGAGAAAGCGAGGAAGCTTGGGATTCTGGTAATTGCTGATGAAGTTTATGAGCAGATTACTTTTGGAAGTACCAAGTTTGTGCCAATGGCGGCATTTGCAGCTACTGTGCCAGTTATTACGCTTGGTTCTATATCGAAGAGATGGACCGTACCTGGTTGGCGACTTGGTTGGCTTGTCACCTGTGATCCCACTGCCGCTCTTAAAAATTCTGGGCTAATTGAGCGCATAACGGAGTGTCTTGAAGTTACAACTGATCCTGCAACCTTCATGCAGGCAGCAATTCCTCAAATTCTAGAGAAGACCAAAGAGGAGTTCTATTCAAACATAATTGCGATTTTAAGACGTTGCGCGGACATATGTTTTGATAGACTTCAGGAAATCCCCTGCATTACTTGCCCAAGCAAACCAGAGGGTTCCATGTTTCTAATGGTGAAGCTAAACCTCGAATTATTGGATGACATTGGTGATGATATGGAGTTTTGCATTAAACTTGCCGAAGAGGAATCTGTTGTCGTTTTACCTGGGGTGGCTGTGGGAATGAAGAACTGGTTGCGCGTAACCTTCGCTTGCGATCATTCATGTCTCGAAGATGGCCTTGGCCGGATGAAAGCCTTCTGCCAACGGCATGCCAAGAAACATTAG

Protein Analysis

424

Amino Acids

46.81

Weight (kDa)

5.42

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 47 - 405 2.9e-57 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 404
AccBSI CCGCTC 1 cut(s) 827
AccI GTMKAC 1 cut(s) 219
AccII CGCG 2 cut(s) 980, 1185
AccIII TCCGGA 1 cut(s) 496
AciI CCGC 8 cut(s) 171, 234, 238, 455, 629, 719, 825, 980
AclWI GGATC 2 cut(s) 809, 878
AcoI YGGCCR 1 cut(s) 1228
AcsI RAATTY 4 cut(s) 31, 43, 835, 918
AcuI CTGAAG 2 cut(s) 225, 986
AcyI GRCGYC 2 cut(s) 210, 222
AfaI GTAC 5 cut(s) 101, 320, 600, 700, 780
AfiI CCNNNNNNNGG 4 cut(s) 263, 331, 428, 503
AgsI TTSAA 5 cut(s) 363, 374, 533, 872, 951
AhlI ACTAGT 1 cut(s) 191
AjiI CACGTC 1 cut(s) 398
AjnI CCWGG 4 cut(s) 427, 577, 781, 1150
AjuI GAANNNNNNNTTGG 4 cut(s) 926, 958, 1209, 1241
AluBI AGCT 6 cut(s) 203, 389, 527, 646, 731, 1066
AluI AGCT 6 cut(s) 203, 389, 527, 646, 731, 1066
Alw26I GTCTC 2 cut(s) 122, 1217
AlwI GGATC 2 cut(s) 809, 878
AlwNI CAGNNNCTG 1 cut(s) 734
Aor13HI TCCGGA 1 cut(s) 496
AoxI GGCC 6 cut(s) 137, 285, 425, 456, 1222, 1228
ApeKI GCWGC 4 cut(s) 197, 200, 728, 905
ApoI RAATTY 4 cut(s) 31, 43, 835, 918
ArsI GACNNNNNNTTYG 2 cut(s) 974, 1006
Asp700I GAANNNNTTC 1 cut(s) 1241
AspLEI GCGC 3 cut(s) 855, 980, 1185
AspS9I GGNCC 2 cut(s) 285, 774
AsuC2I CCSGG 1 cut(s) 402
AsuHPI GGTGA 8 cut(s) 63, 173, 321, 577, 597, 799, 1072, 1106
AvaII GGWCC 1 cut(s) 774
BanI GGYRCC 1 cut(s) 404
BbsI GAAGAC 2 cut(s) 213, 935
BbvI GCAGC 4 cut(s) 184, 212, 740, 917
BccI CCATC 2 cut(s) 765, 1214
BceAI ACGGC 3 cut(s) 81, 197, 1268
BciT130I CCWGG 4 cut(s) 429, 579, 783, 1152
BclI TGATCA 1 cut(s) 567
BcnI CCSGG 1 cut(s) 402
BcoDI GTCTC 2 cut(s) 122, 1217
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 2 cut(s) 192, 923
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 7 cut(s) 198, 201, 456, 720, 729, 825, 906
BlsI GCNGC 7 cut(s) 199, 202, 457, 721, 730, 826, 907
Bme1390I CCNGG 5 cut(s) 402, 429, 579, 783, 1152
Bme18I GGWCC 1 cut(s) 774
BmgBI CACGTC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 285, 774
BmiI GGNNCC 3 cut(s) 406, 420, 1045
BmrFI CCNGG 5 cut(s) 402, 429, 579, 783, 1152
BmsI GCATC 1 cut(s) 77
BpiI GAAGAC 2 cut(s) 213, 935
BpuMI CCSGG 1 cut(s) 402
BsaBI GATNNNNATC 1 cut(s) 342
BsaHI GRCGYC 2 cut(s) 210, 222
BsaJI CCNNGG 5 cut(s) 49, 422, 561, 1151, 1225
BsaWI WCCGGW 2 cut(s) 331, 496
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 331, 428, 503
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 2 cut(s) 740, 1181
Bse3DI GCAATG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 342
BseAI TCCGGA 1 cut(s) 496
BseBI CCWGG 4 cut(s) 429, 579, 783, 1152
BseDI CCNNGG 5 cut(s) 49, 422, 561, 1151, 1225
BseGI GGATG 4 cut(s) 362, 550, 1090, 1239
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 4 cut(s) 263, 331, 428, 503
BseMI GCAATG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 740, 1181
BseRI GAGGAG 1 cut(s) 953
BseXI GCAGC 4 cut(s) 184, 212, 740, 917
BseYI CCCAGC 1 cut(s) 507
Bsh1236I CGCG 2 cut(s) 980, 1185
BshFI GGCC 6 cut(s) 139, 287, 427, 458, 1224, 1230
BshNI GGYRCC 1 cut(s) 404
BsiSI CCGG 5 cut(s) 275, 332, 401, 497, 1231
BslI CCNNNNNNNGG 4 cut(s) 263, 331, 428, 503
BsmAI GTCTC 2 cut(s) 122, 1217
BsnI GGCC 6 cut(s) 139, 287, 427, 458, 1224, 1230
Bsp13I TCCGGA 1 cut(s) 496
Bsp1407I TGTACA 2 cut(s) 99, 598
Bsp143I GATC 6 cut(s) 487, 517, 567, 814, 883, 1201
Bsp19I CCATGG 2 cut(s) 49, 561
BspACI CCGC 8 cut(s) 171, 234, 238, 455, 629, 719, 825, 980
BspANI GGCC 6 cut(s) 139, 287, 427, 458, 1224, 1230
BspEI TCCGGA 1 cut(s) 496
BspFNI CGCG 2 cut(s) 980, 1185
BspLI GGNNCC 3 cut(s) 406, 420, 1045
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 2 cut(s) 809, 878
BspT107I GGYRCC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 827
BsrDI GCAATG 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 274
BsrGI TGTACA 2 cut(s) 99, 598
BsrI ACTGG 2 cut(s) 740, 1181
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 5 cut(s) 49, 422, 561, 1151, 1225
BssMI GATC 6 cut(s) 487, 517, 567, 814, 883, 1201
BssNI GRCGYC 2 cut(s) 210, 222
BssT1I CCWWGG 3 cut(s) 49, 561, 1225
Bst2UI CCWGG 4 cut(s) 429, 579, 783, 1152
Bst4CI ACNGT 7 cut(s) 85, 161, 262, 352, 556, 736, 778
Bst6I CTCTTC 2 cut(s) 761, 1122
BstACI GRCGYC 2 cut(s) 210, 222
BstAPI GCANNNNNTGC 1 cut(s) 1023
BstAUI TGTACA 2 cut(s) 99, 598
BstC8I GCNNGC 4 cut(s) 238, 903, 1198, 1257
BstDSI CCRYGG 2 cut(s) 49, 561
BstEII GGTNACC 2 cut(s) 161, 296
BstF5I GGATG 4 cut(s) 362, 550, 1090, 1239
BstFNI CGCG 2 cut(s) 980, 1185
BstHHI GCGC 3 cut(s) 855, 980, 1185
BstKTI GATC 6 cut(s) 490, 520, 570, 817, 886, 1204
BstMAI GTCTC 2 cut(s) 122, 1217
BstMBI GATC 6 cut(s) 487, 517, 567, 814, 883, 1201
BstMWI GCNNNNNNNGC 9 cut(s) 209, 237, 284, 533, 635, 725, 728, 850, 1023
BstNI CCWGG 4 cut(s) 429, 579, 783, 1152
BstNSI RCATGY 1 cut(s) 1259
BstPI GGTNACC 2 cut(s) 161, 296
BstSCI CCNGG 5 cut(s) 400, 427, 577, 781, 1150
BstSFI CTRYAG 1 cut(s) 198
BstUI CGCG 2 cut(s) 980, 1185
BstV1I GCAGC 4 cut(s) 184, 212, 740, 917
BstV2I GAAGAC 2 cut(s) 213, 935
BstXI CCANNNNNNTGG 1 cut(s) 415
BsuRI GGCC 6 cut(s) 139, 287, 427, 458, 1224, 1230
BtgI CCRYGG 2 cut(s) 49, 561
BtrI CACGTC 1 cut(s) 398
BtsCI GGATG 4 cut(s) 362, 550, 1090, 1239
BtsI GCAGTG 1 cut(s) 819
BtsIMutI CAGTG 1 cut(s) 819
Cac8I GCNNGC 4 cut(s) 238, 903, 1198, 1257
CaiI CAGNNNCTG 1 cut(s) 734
CfoI GCGC 3 cut(s) 855, 980, 1185
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 285, 774
CseI GACGC 2 cut(s) 218, 230
CsiI ACCWGGT 1 cut(s) 781
Csp6I GTAC 5 cut(s) 100, 319, 599, 699, 779
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 9 cut(s) 50, 103, 180, 308, 562, 898, 1048, 1209, 1256
CviQI GTAC 5 cut(s) 100, 319, 599, 699, 779
DpnI GATC 6 cut(s) 489, 519, 569, 816, 885, 1203
DpnII GATC 6 cut(s) 487, 517, 567, 814, 883, 1201
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 1228
Eam1104I CTCTTC 2 cut(s) 761, 1122
EarI CTCTTC 2 cut(s) 761, 1122
EciI GGCGGA 2 cut(s) 160, 223
Eco130I CCWWGG 3 cut(s) 49, 561, 1225
Eco47I GGWCC 1 cut(s) 774
Eco57I CTGAAG 2 cut(s) 225, 986
Eco91I GGTNACC 2 cut(s) 161, 296
EcoO65I GGTNACC 2 cut(s) 161, 296
EcoRII CCWGG 4 cut(s) 427, 577, 781, 1150
EcoT14I CCWWGG 3 cut(s) 49, 561, 1225
ErhI CCWWGG 3 cut(s) 49, 561, 1225
FaeI CATG 9 cut(s) 53, 106, 183, 311, 565, 901, 1051, 1212, 1259
FalI AAGNNNNNCTT 2 cut(s) 1209, 1241
FatI CATG 9 cut(s) 49, 102, 179, 307, 561, 897, 1047, 1208, 1255
FauI CCCGC 1 cut(s) 245
FauNDI CATATG 1 cut(s) 986
FbaI TGATCA 1 cut(s) 567
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 7 cut(s) 198, 201, 456, 720, 729, 825, 906
FokI GGATG 4 cut(s) 369, 557, 1097, 1246
Fsp4HI GCNGC 7 cut(s) 198, 201, 456, 720, 729, 825, 906
FspBI CTAG 2 cut(s) 192, 923
GlaI GCGC 3 cut(s) 854, 979, 1184
GluI GCNGC 7 cut(s) 198, 201, 456, 720, 729, 825, 906
GsaI CCCAGC 1 cut(s) 511
HaeIII GGCC 6 cut(s) 139, 287, 427, 458, 1224, 1230
HapII CCGG 5 cut(s) 275, 332, 401, 497, 1231
HgaI GACGC 2 cut(s) 218, 230
HhaI GCGC 3 cut(s) 855, 980, 1185
Hin1I GRCGYC 2 cut(s) 210, 222
Hin1II CATG 9 cut(s) 53, 106, 183, 311, 565, 901, 1051, 1212, 1259
Hin6I GCGC 3 cut(s) 853, 978, 1183
HinP1I GCGC 3 cut(s) 853, 978, 1183
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 4 cut(s) 14, 93, 652, 1133
HpaII CCGG 5 cut(s) 275, 332, 401, 497, 1231
HphI GGTGA 8 cut(s) 63, 173, 321, 577, 597, 799, 1072, 1106
Hpy166II GTNNAC 2 cut(s) 220, 601
Hpy188I TCNGA 3 cut(s) 188, 423, 544
Hpy188III TCNNGA 7 cut(s) 470, 497, 521, 869, 923, 1004, 1214
Hpy8I GTNNAC 2 cut(s) 220, 601
Hpy99I CGWCG 3 cut(s) 218, 221, 224
HpyAV CCTTC 7 cut(s) 184, 236, 276, 503, 904, 1201, 1252
HpyCH4III ACNGT 7 cut(s) 85, 161, 262, 352, 556, 736, 778
HpyCH4IV ACGT 2 cut(s) 397, 973
HpyCH4V TGCA 7 cut(s) 200, 395, 728, 890, 901, 1017, 1113
HpyF10VI GCNNNNNNNGC 9 cut(s) 209, 237, 284, 533, 635, 725, 728, 850, 1023
HpySE526I ACGT 2 cut(s) 397, 973
Hsp92I GRCGYC 2 cut(s) 210, 222
Hsp92II CATG 9 cut(s) 53, 106, 183, 311, 565, 901, 1051, 1212, 1259
HspAI GCGC 3 cut(s) 853, 978, 1183
Kpn2I TCCGGA 1 cut(s) 496
Ksp22I TGATCA 1 cut(s) 567
Kzo9I GATC 6 cut(s) 487, 517, 567, 814, 883, 1201
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 4 cut(s) 184, 212, 740, 917
LweI GCATC 1 cut(s) 77
MabI ACCWGGT 1 cut(s) 781
MaeI CTAG 2 cut(s) 192, 923
MaeII ACGT 2 cut(s) 397, 973
MaeIII GTNAC 6 cut(s) 155, 161, 296, 805, 874, 1186
MalI GATC 6 cut(s) 489, 519, 569, 816, 885, 1203
MbiI CCGCTC 1 cut(s) 827
MboI GATC 6 cut(s) 487, 517, 567, 814, 883, 1201
MboII GAAGA 9 cut(s) 31, 34, 218, 634, 778, 940, 1139, 1183, 1229
MluCI AATT 9 cut(s) 31, 43, 660, 835, 846, 909, 918, 957, 1076
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 334
MroI TCCGGA 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 1241
MseI TTAA 3 cut(s) 831, 968, 1116
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 5 cut(s) 275, 332, 401, 497, 1231
MspR9I CCNGG 5 cut(s) 402, 429, 579, 783, 1152
MvaI CCWGG 4 cut(s) 429, 579, 783, 1152
MvnI CGCG 2 cut(s) 980, 1185
MwoI GCNNNNNNNGC 9 cut(s) 209, 237, 284, 533, 635, 725, 728, 850, 1023
NciI CCSGG 1 cut(s) 402
NcoI CCATGG 2 cut(s) 49, 561
NdeI CATATG 1 cut(s) 986
NdeII GATC 6 cut(s) 487, 517, 567, 814, 883, 1201
NlaIII CATG 9 cut(s) 53, 106, 183, 311, 565, 901, 1051, 1212, 1259
NlaIV GGNNCC 3 cut(s) 406, 420, 1045
NmuCI GTSAC 3 cut(s) 155, 161, 805
NspI RCATGY 1 cut(s) 1259
PaeI GCATGC 1 cut(s) 1259
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 1241
PfeI GAWTC 3 cut(s) 93, 652, 1133
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 7 cut(s) 199, 202, 457, 721, 730, 826, 907
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 4 cut(s) 427, 577, 781, 1150
PspEI GGTNACC 2 cut(s) 161, 296
PspFI CCCAGC 1 cut(s) 507
PspGI CCWGG 4 cut(s) 427, 577, 781, 1150
PspN4I GGNNCC 3 cut(s) 406, 420, 1045
PspPI GGNCC 2 cut(s) 285, 774
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 734
PsyI GACNNNGTC 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 5 cut(s) 101, 320, 600, 700, 780
RsaNI GTAC 5 cut(s) 100, 319, 599, 699, 779
RseI CAYNNNNRTG 1 cut(s) 107
SalI GTCGAC 1 cut(s) 218
SaqAI TTAA 3 cut(s) 831, 968, 1116
SatI GCNGC 7 cut(s) 198, 201, 456, 720, 729, 825, 906
Sau3AI GATC 6 cut(s) 487, 517, 567, 814, 883, 1201
Sau96I GGNCC 2 cut(s) 285, 774
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 5 cut(s) 402, 429, 579, 783, 1152
SexAI ACCWGGT 1 cut(s) 781
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 198
SgrDI CGTCGACG 1 cut(s) 218
SinI GGWCC 1 cut(s) 774
SmiMI CAYNNNNRTG 1 cut(s) 107
SpeI ACTAGT 1 cut(s) 191
SphI GCATGC 1 cut(s) 1259
Sse9I AATT 9 cut(s) 31, 43, 660, 835, 846, 909, 918, 957, 1076
SsiI CCGC 8 cut(s) 171, 234, 238, 455, 629, 719, 825, 980
SspMI CTAG 2 cut(s) 192, 923
StyD4I CCNGG 5 cut(s) 400, 427, 577, 781, 1150
StyI CCWWGG 3 cut(s) 49, 561, 1225
TaaI ACNGT 7 cut(s) 85, 161, 262, 352, 556, 736, 778
TaiI ACGT 2 cut(s) 400, 976
TaqI TCGA 8 cut(s) 17, 88, 219, 471, 522, 764, 1074, 1215
TasI AATT 9 cut(s) 31, 43, 660, 835, 846, 909, 918, 957, 1076
TatI WGTACW 2 cut(s) 99, 598
TauI GCSGC 3 cut(s) 458, 722, 827
TfiI GAWTC 3 cut(s) 93, 652, 1133
Tru1I TTAA 3 cut(s) 831, 968, 1116
Tru9I TTAA 3 cut(s) 831, 968, 1116
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 3 cut(s) 155, 161, 805
TseI GCWGC 4 cut(s) 197, 200, 728, 905
Tsp45I GTSAC 3 cut(s) 155, 161, 805
TspDTI ATGAA 6 cut(s) 561, 684, 886, 1184, 1197, 1250
TspGWI ACGGA 2 cut(s) 467, 875
TspRI CASTG 1 cut(s) 826
Tth111I GACNNNGTC 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 774
XapI RAATTY 4 cut(s) 31, 43, 835, 918
XbaI TCTAGA 1 cut(s) 922
XceI RCATGY 1 cut(s) 1259
XcmI CCANNNNNNNNNTGG 1 cut(s) 1054
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 1241
XspI CTAG 2 cut(s) 192, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.