Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Forward (+)

43592451 .. 43595000

Gene Structure 2550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAAAACAAGTGGAATTTTCAGAGGAATGGAGAGCTCAAACCTGAACCACCAACCACGGTTCGAGGAGTTCTCACCATGATAATGCAAAATCGCAACAAAGATGATCCAAGGTCTATCATTCCTTTAGGCCACGGTGACCCCTCCGCTTTCCCATGCTTTCGGACAAGTATTTCAGCCGAAGATGCCATCGTTGATTCTGTTCGGTCCGGCAAGTTTAACTGCTATTCTCCCTCAGTTGGTATTCTACCAGCAAGGAGGGCTATTGCAGATTACCTGTCAAATGATCTCCCATACAAGTTATCGCCTGACGATGTTTATCTTACAATTGGGTGTACACAAGCAATTGAAGTGGTACTGACAGCTATATCCCTGTCAAATCCTGTTGCCAACATTCTGCTTCCAAGGCCAGGCTTCCCTTACTATGAAACTCGTGCAGCCTGTTCCAATCTGGAAGTTCGTCGCTATGATCTGCTTCCGGAACAGGGTTGGGAGGTTGATCTTGAAGCTCTTGAAGCACTTGCAGATGAAAATACTGTTGCCATGGTCATCATCAATCCTGGAAATCCTTGTGGAAATGTTTATACGTCTCAACATTTGAAGAAGATTGCAGAGACGGCAAGGAAGCTTGGGATTCTTGTAGTTGCTGATGAAGTGTATGACCATCTTACTTTCGCAAATACCCCATTTGTGCCAATGGGGACATTTGGATCTGTTGTCCCAGTTCTTACACTTGGTTCTATATCAAAGAGATGGATTGTACCTGGTTGGAGACTTGGTTGGATTGTTACCTGTGACCCCAACGCAATTCTTCAAAAGTCGGGGATTATGAAGTCCATTACAGGATGTCTCGAAGTCTCAACGGATGCTCCAACCTTCATTCAGGCAGCAATTCCTCAAATTATAGAGAATACAAAGGAGGATTTCTTTTTGAAAATAGTTGAGATGCTACGAGGTGCTGCAGACATATGTTTTGATAAACTTAATGAGATTCCCTGCATTACGTGCCCAAGCAAACCTGAGGGTTCCATGTTTGTAATGGTAAAGCTGAATCTCTCGTTGTTCGATGACATTAGTGATGATGTTGAGTTCAGCCTCAAACTTGCCAAAGAGGAATCTGTCATAGTACTACCTGGTGTGACTGTTGGATTGAAGAACTGGTTGCGGATAACATTTGCTTGTGACCATTCAATTCTTGAAGATGGCCTTGGGAGGATTAAAGGCTTCTGTGGAAGGCATGCCAAGAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

418

Amino Acids

45.98

Weight (kDa)

5.34

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	40 - 405	1.3e-53	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	2 cut(s)	147, 1165
AclWI	GGATC	2 cut(s)	101, 718
AcsI	RAATTY	1 cut(s)	16
AfaI	GTAC	4 cut(s)	337, 357, 762, 1128
AfiI	CCNNNNNNNGG	3 cut(s)	239, 410, 485
AgsI	TTSAA	9 cut(s)	350, 506, 515, 601, 815, 934, 1153, 1191, 1199
AjnI	CCWGG	4 cut(s)	409, 559, 763, 1132
AjuI	GAANNNNNNNTTGG	2 cut(s)	1191, 1223
AluBI	AGCT	5 cut(s)	37, 365, 509, 628, 1048
AluI	AGCT	5 cut(s)	37, 365, 509, 628, 1048
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	5 cut(s)	594, 608, 766, 854, 862
AlwI	GGATC	2 cut(s)	101, 718
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	3 cut(s)	130, 407, 1204
ApeKI	GCWGC	3 cut(s)	437, 887, 959
ApoI	RAATTY	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	67, 149
AvaII	GGWCC	1 cut(s)	207
AxyI	CCTNAGG	1 cut(s)	1020
BaeGI	GKGCMC	1 cut(s)	1010
BanII	GRGCYC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	449, 899, 946
BccI	CCATC	4 cut(s)	197, 672, 747, 1196
BceAI	ACGGC	1 cut(s)	633
BciT130I	CCWGG	4 cut(s)	411, 561, 765, 1134
BcoDI	GTCTC	5 cut(s)	594, 608, 766, 854, 862
BfmI	CTRYAG	1 cut(s)	960
BisI	GCNGC	3 cut(s)	438, 888, 960
BlsI	GCNGC	3 cut(s)	439, 889, 961
BmcAI	AGTACT	1 cut(s)	1128
Bme1390I	CCNGG	4 cut(s)	411, 561, 765, 1134
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	1027
BmrFI	CCNGG	4 cut(s)	411, 561, 765, 1134
BmrI	ACTGGG	1 cut(s)	716
BmsI	GCATC	3 cut(s)	175, 856, 936
BmuI	ACTGGG	1 cut(s)	716
BplI	GAGNNNNNCTC	2 cut(s)	57, 89
BsaAI	YACGTR	1 cut(s)	1005
BsaBI	GATNNNNATC	1 cut(s)	318
BsaJI	CCNNGG	6 cut(s)	57, 110, 133, 404, 543, 1207
BsaWI	WCCGGW	1 cut(s)	478
BsaXI	ACNNNNNCTCC	4 cut(s)	763, 793, 853, 883
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 410, 485
Bse1I	ACTGG	2 cut(s)	722, 1163
Bse21I	CCTNAGG	1 cut(s)	1020
Bse8I	GATNNNNATC	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	478
BseBI	CCWGG	4 cut(s)	411, 561, 765, 1134
BseDI	CCNNGG	6 cut(s)	57, 110, 133, 404, 543, 1207
BseGI	GGATG	2 cut(s)	851, 871
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	3 cut(s)	239, 410, 485
BseMII	CTCAG	2 cut(s)	249, 1011
BseNI	ACTGG	2 cut(s)	722, 1163
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	1010
BseXI	GCAGC	3 cut(s)	449, 899, 946
BsgI	GTGCAG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	132, 409, 1206
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	210, 479
BslFI	GGGAC	2 cut(s)	704, 715
BslI	CCNNNNNNNGG	3 cut(s)	239, 410, 485
BsmAI	GTCTC	5 cut(s)	594, 608, 766, 854, 862
BsmBI	CGTCTC	2 cut(s)	594, 608
BsmFI	GGGAC	2 cut(s)	704, 715
BsnI	GGCC	3 cut(s)	132, 409, 1206
Bsp1286I	GDGCHC	2 cut(s)	39, 1010
Bsp13I	TCCGGA	1 cut(s)	478
Bsp1407I	TGTACA	1 cut(s)	335
Bsp143I	GATC	5 cut(s)	106, 286, 469, 499, 710
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	2 cut(s)	147, 1165
BspANI	GGCC	3 cut(s)	132, 409, 1206
BspCNI	CTCAG	2 cut(s)	248, 1012
BspEI	TCCGGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	1027
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	2 cut(s)	101, 718
BsrGI	TGTACA	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	722, 1163
BssECI	CCNNGG	6 cut(s)	57, 110, 133, 404, 543, 1207
BssMI	GATC	5 cut(s)	106, 286, 469, 499, 710
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	4 cut(s)	110, 404, 543, 1207
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	4 cut(s)	411, 561, 765, 1134
Bst4CI	ACNGT	4 cut(s)	61, 137, 538, 1144
BstAPI	GCANNNNNTGC	1 cut(s)	1005
BstAUI	TGTACA	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	1005
BstC8I	GCNNGC	1 cut(s)	1239
BstDEI	CTNAG	2 cut(s)	235, 1020
BstDSI	CCRYGG	3 cut(s)	57, 133, 543
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	851, 871
BstKTI	GATC	5 cut(s)	109, 289, 472, 502, 713
BstMAI	GTCTC	5 cut(s)	594, 608, 766, 854, 862
BstMBI	GATC	5 cut(s)	106, 286, 469, 499, 710
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 260, 406, 515, 617, 1005
BstNI	CCWGG	4 cut(s)	411, 561, 765, 1134
BstNSI	RCATGY	1 cut(s)	1241
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	4 cut(s)	409, 559, 763, 1132
BstSFI	CTRYAG	1 cut(s)	960
BstSLI	GKGCMC	1 cut(s)	1010
BstV1I	GCAGC	3 cut(s)	449, 899, 946
BstX2I	RGATCY	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	710
Bsu36I	CCTNAGG	1 cut(s)	1020
BsuRI	GGCC	3 cut(s)	132, 409, 1206
BtgI	CCRYGG	3 cut(s)	57, 133, 543
BtsCI	GGATG	2 cut(s)	851, 871
Cac8I	GCNNGC	1 cut(s)	1239
Cfr13I	GGNCC	1 cut(s)	207
CpoI	CGGWCCG	1 cut(s)	207
CsiI	ACCWGGT	2 cut(s)	763, 1132
Csp6I	GTAC	4 cut(s)	336, 356, 761, 1127
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CspI	CGGWCCG	1 cut(s)	207
CviAII	CATG	5 cut(s)	79, 156, 544, 1030, 1238
CviQI	GTAC	4 cut(s)	336, 356, 761, 1127
DdeI	CTNAG	2 cut(s)	235, 1020
DpnI	GATC	5 cut(s)	108, 288, 471, 501, 712
DpnII	GATC	5 cut(s)	106, 286, 469, 499, 710
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	4 cut(s)	110, 404, 543, 1207
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	37
Eco81I	CCTNAGG	1 cut(s)	1020
Eco91I	GGTNACC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	4 cut(s)	409, 559, 763, 1132
EcoT14I	CCWWGG	4 cut(s)	110, 404, 543, 1207
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	4 cut(s)	110, 404, 543, 1207
Esp3I	CGTCTC	2 cut(s)	594, 608
FaeI	CATG	5 cut(s)	82, 159, 547, 1033, 1241
FalI	AAGNNNNNCTT	2 cut(s)	1191, 1223
FaqI	GGGAC	2 cut(s)	704, 715
FatI	CATG	5 cut(s)	78, 155, 543, 1029, 1237
FauNDI	CATATG	1 cut(s)	968
Fnu4HI	GCNGC	3 cut(s)	438, 888, 960
FokI	GGATG	2 cut(s)	858, 878
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	438, 888, 960
GluI	GCNGC	3 cut(s)	438, 888, 960
HaeIII	GGCC	3 cut(s)	132, 409, 1206
HapII	CCGG	2 cut(s)	210, 479
Hin1II	CATG	5 cut(s)	82, 159, 547, 1033, 1241
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	5 cut(s)	197, 634, 991, 1051, 1115
HpaII	CCGG	2 cut(s)	210, 479
HphI	GGTGA	2 cut(s)	67, 149
Hpy166II	GTNNAC	2 cut(s)	336, 338
Hpy188I	TCNGA	2 cut(s)	24, 165
Hpy188III	TCNNGA	6 cut(s)	452, 479, 503, 512, 851, 1196
Hpy8I	GTNNAC	2 cut(s)	336, 338
Hpy99I	CGWCG	1 cut(s)	465
HpyAV	CCTTC	2 cut(s)	886, 1227
HpyCH4III	ACNGT	4 cut(s)	61, 137, 538, 1144
HpyCH4IV	ACGT	2 cut(s)	587, 1004
HpyCH4V	TGCA	7 cut(s)	88, 269, 437, 524, 611, 962, 999
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 260, 406, 515, 617, 1005
HpyF3I	CTNAG	2 cut(s)	235, 1020
HpySE526I	ACGT	2 cut(s)	587, 1004
Hsp92II	CATG	5 cut(s)	82, 159, 547, 1033, 1241
Kpn2I	TCCGGA	1 cut(s)	478
Kzo9I	GATC	5 cut(s)	106, 286, 469, 499, 710
LmnI	GCTCC	1 cut(s)	874
Lsp1109I	GCAGC	3 cut(s)	449, 899, 946
LweI	GCATC	3 cut(s)	175, 856, 936
MabI	ACCWGGT	2 cut(s)	763, 1132
MaeII	ACGT	2 cut(s)	587, 1004
MaeIII	GTNAC	5 cut(s)	137, 787, 794, 1138, 1181
MalI	GATC	5 cut(s)	108, 288, 471, 501, 712
MboI	GATC	5 cut(s)	106, 286, 469, 499, 710
MboII	GAAGA	6 cut(s)	194, 613, 616, 803, 1165, 1211
MfeI	CAATTG	2 cut(s)	327, 345
MflI	RGATCY	1 cut(s)	710
MhlI	GDGCHC	2 cut(s)	39, 1010
MluCI	AATT	7 cut(s)	16, 327, 345, 807, 891, 900, 1191
MmeI	TCCRAC	4 cut(s)	749, 761, 896, 1126
MroI	TCCGGA	1 cut(s)	478
MseI	TTAA	3 cut(s)	219, 984, 1218
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	2 cut(s)	210, 479
MspR9I	CCNGG	4 cut(s)	411, 561, 765, 1134
MunI	CAATTG	2 cut(s)	327, 345
MvaI	CCWGG	4 cut(s)	411, 561, 765, 1134
MwoI	GCNNNNNNNGC	6 cut(s)	185, 260, 406, 515, 617, 1005
NcoI	CCATGG	1 cut(s)	543
NdeI	CATATG	1 cut(s)	968
NdeII	GATC	5 cut(s)	106, 286, 469, 499, 710
NlaIII	CATG	5 cut(s)	82, 159, 547, 1033, 1241
NlaIV	GGNNCC	1 cut(s)	1027
NmuCI	GTSAC	4 cut(s)	137, 794, 1138, 1181
NspI	RCATGY	1 cut(s)	1241
PaeI	GCATGC	1 cut(s)	1241
PfeI	GAWTC	5 cut(s)	197, 634, 991, 1051, 1115
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	439, 889, 961
Ppu21I	YACGTR	1 cut(s)	1005
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	4 cut(s)	409, 559, 763, 1132
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	4 cut(s)	409, 559, 763, 1132
PspN4I	GGNNCC	1 cut(s)	1027
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	964
PsuI	RGATCY	1 cut(s)	710
RsaI	GTAC	4 cut(s)	337, 357, 762, 1128
RsaNI	GTAC	4 cut(s)	336, 356, 761, 1127
RseI	CAYNNNNRTG	1 cut(s)	83
Rsr2I	CGGWCCG	1 cut(s)	207
RsrII	CGGWCCG	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	219, 984, 1218
SatI	GCNGC	3 cut(s)	438, 888, 960
Sau3AI	GATC	5 cut(s)	106, 286, 469, 499, 710
Sau96I	GGNCC	1 cut(s)	207
ScaI	AGTACT	1 cut(s)	1128
ScrFI	CCNGG	4 cut(s)	411, 561, 765, 1134
SduI	GDGCHC	2 cut(s)	39, 1010
SexAI	ACCWGGT	2 cut(s)	763, 1132
SfaNI	GCATC	3 cut(s)	175, 856, 936
SfcI	CTRYAG	1 cut(s)	960
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	83
SphI	GCATGC	1 cut(s)	1241
Sse9I	AATT	7 cut(s)	16, 327, 345, 807, 891, 900, 1191
SsiI	CCGC	2 cut(s)	147, 1165
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	4 cut(s)	409, 559, 763, 1132
StyI	CCWWGG	4 cut(s)	110, 404, 543, 1207
TaaI	ACNGT	4 cut(s)	61, 137, 538, 1144
TaiI	ACGT	2 cut(s)	590, 1007
TaqI	TCGA	3 cut(s)	64, 852, 1065
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	7 cut(s)	16, 327, 345, 807, 891, 900, 1191
TatI	WGTACW	2 cut(s)	335, 1126
TfiI	GAWTC	5 cut(s)	197, 634, 991, 1051, 1115
Tru1I	TTAA	3 cut(s)	219, 984, 1218
Tru9I	TTAA	3 cut(s)	219, 984, 1218
TseFI	GTSAC	4 cut(s)	137, 794, 1138, 1181
TseI	GCWGC	3 cut(s)	437, 887, 959
Tsp45I	GTSAC	4 cut(s)	137, 794, 1138, 1181
TspDTI	ATGAA	5 cut(s)	441, 543, 666, 845, 868
TspGWI	ACGGA	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	1241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1036
ZrmI	AGTACT	1 cut(s)	1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.