Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Reverse (-)

29375939 .. 29376175

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0274500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCTTCATCATCTAACCCACCTCATGACATACCTTATGAGGATGAGGGTATCATTGAAGCTATGTCAGTATGCTTCGAAGATACTGCTGATTTCCTGGACCTAGAGGCTGGTATTAGTCTCCTGGGAATTCTTATTGCGGATGAGGAACCTGGTCTGGGTGGAGTCAAGGAAATACTGATGGGGATGTGGAAATCTCTAGGCCAGATCCGAATCATACGGGTGAAGAAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

78

Amino Acids

8.48

Weight (kDa)

4.3

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	3 cut(s)	96, 123, 151
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	100
BccI	CCATC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	3 cut(s)	98, 125, 153
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	2 cut(s)	104, 200
Bme1390I	CCNGG	3 cut(s)	98, 125, 153
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	3 cut(s)	98, 125, 153
Bpu14I	TTCGAA	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	212
BseBI	CCWGG	3 cut(s)	98, 125, 153
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	3 cut(s)	49, 148, 192
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	204
Bsp119I	TTCGAA	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	202
BspT104I	TTCGAA	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	207
Bst2UI	CCWGG	3 cut(s)	98, 125, 153
BstBI	TTCGAA	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	49, 148, 192
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	207
BstNI	CCWGG	3 cut(s)	98, 125, 153
BstSCI	CCNGG	3 cut(s)	96, 123, 151
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	49, 148, 192
CciI	TCATGA	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	151
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	4 cut(s)	5, 62, 110, 204
CviKI_1	RGCY	4 cut(s)	5, 62, 110, 204
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	129
EcoRII	CCWGG	3 cut(s)	96, 123, 151
FaeI	CATG	1 cut(s)	29
FaiI	YATR	6 cut(s)	27, 32, 39, 65, 73, 218
FatI	CATG	1 cut(s)	25
FokI	GGATG	3 cut(s)	56, 155, 199
FspBI	CTAG	2 cut(s)	104, 200
HaeIII	GGCC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	29
HinfI	GANTC	2 cut(s)	165, 213
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	207
LpnPI	CCDG	9 cut(s)	83, 96, 110, 110, 137, 138, 143, 165, 218
MabI	ACCWGGT	1 cut(s)	151
MaeI	CTAG	2 cut(s)	104, 200
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	207
MluCI	AATT	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	5 cut(s)	33, 34, 40, 100, 139
MseI	TTAA	1 cut(s)	235
MslI	CAYNNNNRTG	1 cut(s)	221
MspR9I	CCNGG	3 cut(s)	98, 125, 153
MvaI	CCWGG	3 cut(s)	98, 125, 153
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	1 cut(s)	150
NspV	TTCGAA	1 cut(s)	78
PagI	TCATGA	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	213
PfoI	TCCNGGA	1 cut(s)	96
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	3 cut(s)	96, 123, 151
PspGI	CCWGG	3 cut(s)	96, 123, 151
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	207
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	235
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	3 cut(s)	98, 125, 153
SetI	ASST	5 cut(s)	25, 37, 64, 105, 154
SexAI	ACCWGGT	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	2 cut(s)	104, 200
StyD4I	CCNGG	3 cut(s)	96, 123, 151
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	235
Tru9I	TTAA	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	129
XspI	CTAG	2 cut(s)	104, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.