Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Forward (+)

46824552 .. 46828100

Gene Structure 3549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG325800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAAATGGAAAACAAGTGGAATTTTCAGGGGAATGGAGAGCTCAAACCGGAACCACCAACCACGGTTCGAGGAGTTCTCACCATGATAATGCAAAATCTCAACAAAGATGATCCAAGGTCTATCATTCCTTTAGGCCACGGTGACCCCTCCGCTTTCCCATGCTTTCGGACTAGTATTTCAGCCGAAGATGCCATCGTTGATTCTGTTCGGTCCGGCAAGTTTAACAGCTATTCTCCCGCAGTTGGTATTCTACCAGCAAGGAGGGCTATTGCAGACTATCTGTCAAATGATCTCCCATACAAGTTATCACCTGACGATGTTTATCTTACAATTGGGTGTACACAAGCAATTGAAGTGGTACTGACAGCTATATCCCTGTCAAATCCTGTTGCCAACATTCTGCTTCCAAGGCCATGCTTCCCTTTCTATGAAACTCGTGCAGCCTGTTCCAATCTGGAAGTTCGTCGCTATGATCTGCTTCCGGAACAGGGTTGGGAGGTTGATCTTGAAGCTCTTGAAGCACTTGCAGATGAAAATACTGTTGCCATGGTCATCATCAATCCTGGAAATCCTTGTGGAAATGTTTATACGTCTCAACATTTGAAGAAGATTGCAGAGACGGCAAGGAAGCTTGGGATTCTTGTAATTGCTGATGAAGTGTATGACCATCTTACTTTCGCAAATACCCCGTTTGTGCCAATGGGGACATTTGGATCTGTTGTCCCAGTTCTTACACTTGGTTCTATATCAAAGAGATGGATTGTACCTGGTTGGAGACTTGGTTGGATTGTTACCTGTGACCCCAACGCAATTCTTCAAAAGTCGGGAATTATGAAGTCCATTACAGGATGTCTCGAAGTCTCATCGGATGCTCCAACCTTCATTCAGGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

299

Amino Acids

32.74

Weight (kDa)

4.99

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	42 - 271	2.8e-40	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	2 cut(s)	153, 240
AclWI	GGATC	2 cut(s)	107, 724
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	3 cut(s)	343, 363, 768
AfiI	CCNNNNNNNGG	2 cut(s)	245, 491
AgsI	TTSAA	5 cut(s)	356, 512, 521, 607, 821
AhdI	GACNNNNNGTC	1 cut(s)	283
AhlI	ACTAGT	1 cut(s)	173
AjnI	CCWGG	2 cut(s)	565, 769
AluBI	AGCT	5 cut(s)	43, 231, 371, 515, 634
AluI	AGCT	5 cut(s)	43, 231, 371, 515, 634
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	5 cut(s)	600, 614, 772, 860, 868
AlwI	GGATC	2 cut(s)	107, 724
AlwNI	CAGNNNCTG	1 cut(s)	895
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	2 cut(s)	136, 413
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	3 cut(s)	73, 155, 303
AvaII	GGWCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	3 cut(s)	203, 678, 753
BceAI	ACGGC	1 cut(s)	639
BciT130I	CCWGG	2 cut(s)	567, 771
BcoDI	GTCTC	5 cut(s)	600, 614, 772, 860, 868
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	2 cut(s)	567, 771
Bme18I	GGWCC	1 cut(s)	213
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	567, 771
BmrI	ACTGGG	1 cut(s)	722
BmsI	GCATC	2 cut(s)	181, 862
BmuI	ACTGGG	1 cut(s)	722
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	5 cut(s)	63, 116, 139, 410, 549
BsaWI	WCCGGW	2 cut(s)	49, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	769, 799
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 491
Bse1I	ACTGG	1 cut(s)	728
Bse8I	GATNNNNATC	1 cut(s)	324
BseAI	TCCGGA	1 cut(s)	484
BseBI	CCWGG	2 cut(s)	567, 771
BseDI	CCNNGG	5 cut(s)	63, 116, 139, 410, 549
BseGI	GGATG	2 cut(s)	857, 877
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	245, 491
BseNI	ACTGG	1 cut(s)	728
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	138, 415
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	50, 216, 485
BslFI	GGGAC	2 cut(s)	710, 721
BslI	CCNNNNNNNGG	2 cut(s)	245, 491
BsmAI	GTCTC	5 cut(s)	600, 614, 772, 860, 868
BsmBI	CGTCTC	2 cut(s)	600, 614
BsmFI	GGGAC	2 cut(s)	710, 721
BsnI	GGCC	2 cut(s)	138, 415
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	484
Bsp1407I	TGTACA	1 cut(s)	341
Bsp143I	GATC	5 cut(s)	112, 292, 475, 505, 716
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	2 cut(s)	153, 240
BspANI	GGCC	2 cut(s)	138, 415
BspEI	TCCGGA	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	2 cut(s)	107, 724
BsrGI	TGTACA	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	728
BssECI	CCNNGG	5 cut(s)	63, 116, 139, 410, 549
BssMI	GATC	5 cut(s)	112, 292, 475, 505, 716
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	3 cut(s)	116, 410, 549
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	567, 771
Bst4CI	ACNGT	3 cut(s)	67, 143, 544
BstAUI	TGTACA	1 cut(s)	341
BstDSI	CCRYGG	3 cut(s)	63, 139, 549
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	857, 877
BstKTI	GATC	5 cut(s)	115, 295, 478, 508, 719
BstMAI	GTCTC	5 cut(s)	600, 614, 772, 860, 868
BstMBI	GATC	5 cut(s)	112, 292, 475, 505, 716
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 266, 412, 521, 623
BstNI	CCWGG	2 cut(s)	567, 771
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	565, 769
BstV1I	GCAGC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	716
BsuRI	GGCC	2 cut(s)	138, 415
BtgI	CCRYGG	3 cut(s)	63, 139, 549
BtsCI	GGATG	2 cut(s)	857, 877
CaiI	CAGNNNCTG	1 cut(s)	895
Cfr13I	GGNCC	1 cut(s)	213
CpoI	CGGWCCG	1 cut(s)	213
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	3 cut(s)	342, 362, 767
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CspI	CGGWCCG	1 cut(s)	213
CviAII	CATG	4 cut(s)	85, 162, 417, 550
CviQI	GTAC	3 cut(s)	342, 362, 767
DpnI	GATC	5 cut(s)	114, 294, 477, 507, 718
DpnII	GATC	5 cut(s)	112, 292, 475, 505, 716
DriI	GACNNNNNGTC	1 cut(s)	283
Eam1105I	GACNNNNNGTC	1 cut(s)	283
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	3 cut(s)	116, 410, 549
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	43
Eco91I	GGTNACC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	565, 769
EcoT14I	CCWWGG	3 cut(s)	116, 410, 549
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	3 cut(s)	116, 410, 549
Esp3I	CGTCTC	2 cut(s)	600, 614
FaeI	CATG	4 cut(s)	88, 165, 420, 553
FaqI	GGGAC	2 cut(s)	710, 721
FatI	CATG	4 cut(s)	84, 161, 416, 549
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	864, 884
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	138, 415
HapII	CCGG	3 cut(s)	50, 216, 485
Hin1II	CATG	4 cut(s)	88, 165, 420, 553
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	2 cut(s)	203, 640
HpaII	CCGG	3 cut(s)	50, 216, 485
HphI	GGTGA	3 cut(s)	73, 155, 303
Hpy166II	GTNNAC	2 cut(s)	342, 344
Hpy188I	TCNGA	2 cut(s)	171, 871
Hpy188III	TCNNGA	6 cut(s)	458, 485, 509, 518, 828, 857
Hpy8I	GTNNAC	2 cut(s)	342, 344
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	1 cut(s)	892
HpyCH4III	ACNGT	3 cut(s)	67, 143, 544
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	5 cut(s)	94, 275, 443, 530, 617
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 266, 412, 521, 623
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	4 cut(s)	88, 165, 420, 553
Kpn2I	TCCGGA	1 cut(s)	484
Kzo9I	GATC	5 cut(s)	112, 292, 475, 505, 716
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	2 cut(s)	181, 862
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	3 cut(s)	143, 793, 800
MalI	GATC	5 cut(s)	114, 294, 477, 507, 718
MboI	GATC	5 cut(s)	112, 292, 475, 505, 716
MboII	GAAGA	4 cut(s)	200, 619, 622, 809
MfeI	CAATTG	2 cut(s)	333, 351
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	6 cut(s)	22, 333, 351, 648, 813, 831
MmeI	TCCRAC	2 cut(s)	755, 767
MnlI	CCTC	4 cut(s)	65, 160, 258, 493
MroI	TCCGGA	1 cut(s)	484
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	3 cut(s)	50, 216, 485
MspR9I	CCNGG	2 cut(s)	567, 771
MunI	CAATTG	2 cut(s)	333, 351
MvaI	CCWGG	2 cut(s)	567, 771
MwoI	GCNNNNNNNGC	5 cut(s)	191, 266, 412, 521, 623
NcoI	CCATGG	1 cut(s)	549
NdeII	GATC	5 cut(s)	112, 292, 475, 505, 716
NlaIII	CATG	4 cut(s)	88, 165, 420, 553
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	143, 800
PfeI	GAWTC	2 cut(s)	203, 640
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	565, 769
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	2 cut(s)	565, 769
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	895
PsuI	RGATCY	1 cut(s)	716
RsaI	GTAC	3 cut(s)	343, 363, 768
RsaNI	GTAC	3 cut(s)	342, 362, 767
RseI	CAYNNNNRTG	1 cut(s)	89
Rsr2I	CGGWCCG	1 cut(s)	213
RsrII	CGGWCCG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	5 cut(s)	112, 292, 475, 505, 716
Sau96I	GGNCC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	567, 771
SduI	GDGCHC	1 cut(s)	45
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	2 cut(s)	181, 862
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	89
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	6 cut(s)	22, 333, 351, 648, 813, 831
SsiI	CCGC	2 cut(s)	153, 240
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	565, 769
StyI	CCWWGG	3 cut(s)	116, 410, 549
TaaI	ACNGT	3 cut(s)	67, 143, 544
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	2 cut(s)	70, 858
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	6 cut(s)	22, 333, 351, 648, 813, 831
TatI	WGTACW	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	203, 640
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TseFI	GTSAC	2 cut(s)	143, 800
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	2 cut(s)	143, 800
TspDTI	ATGAA	5 cut(s)	447, 549, 672, 851, 874
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	22
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.