Rw2G026420

Aminotransferase class I and II

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
40732003 .. 40735597
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026420.1

Sequence Viewer

Length: 1314 bp
ATGAGGCGCAAGTGGAAAATAACGTGCTATAGCAGACCTCACTCGGCTTCACAAAGGGAAATGGAAAACAAGTGGAATTTTCAGGGGAATGGAGAGCTCAAGCTGGTACCGGCACCCAGGATTCGAGGAGTTCTCAGCATGATAATGCAAAATCTCAACAAAGATGACCAAAGGACTACCATTCCTTTAGGCATCGGTGACCCTTCCGCTTTCCCATGCTTTCGGACTAGCATTTCAGCCGAAGATGCCATCGTTGAATCTGTTCGGTCGGGCAAGTTTAACTGCTATTCTCCCTCAATTGGTATTCTACCAGCAAGGAGGGCAATTGCAGATTATCTGTCAAATGATCTCCCATACAAGTTATCACCTGACGATGTTTATGTTACAAGTGGATGTACGCATGCAATTGAAATGGTTCTGACAGCTATATCTCTGTCAAGTCCTGTTGCCAACATTCTGCTTCCAAGGCCTGGCTTCACTTTCTATGACACTCGGGCAGCCTATTCCAATCTGGAAGTTCGCCGATATGATCTGCTTCCAGAAAAGGGTTGGGAGGTTGATCTTGAAGCTCTTGAGGCACTGGCAGATGAATATACTGTTGCCATGGTCATCATCAATCCTGGAAATCCTTGTGGAAGTGTTTATACGTCTCAACATTTGAAGAAGATTGCAGAGACAGCGAGGAAGCTTGGGATTCTTGTAATTGCTGATGAAGTGTATAACCATCTTACTTTCGGAAGTACTCCATTTGTGCCAATGGGGACATTTGGATCTATTGTCCCAGTTCTTACACTTGGTTCTATATCAAAGAGATGGATTGTACCTGGTTGGAGACTTGGTTGGATTGCCATCTGTGACCCCAATGCAATTCTTCAAAATTCGGGGATTATAAAGTCCATTACAGGATGTCTCGAAGTCTCATCGGATGCTCCAACCTTCATTCAGGCAGCAATTCCTCAAATTATAGAGCACACAAAGGAGGATTTCTTTTTGAAAATAGTTGAGATGCTAAGAGGTGCTGCAGTCATATGTTTTGATAAACTTAACGAGATTCCCTGCATTACGTGCCCAAGCAAACCTGAGGGTTCCATGTTTGTAATGGCAAAGCTGAATCTCTCATTGTTGGATGAAATTAGTGATGATGTTGAGTTCAGCCTCAAACTTGCCAAAGAGGAATCTGTCATAGTACTACCTGGTGTGGCTGTTGGGTTGAAGAACTGGTTGCGGATAACGTTCGCTTGTGACCATTCAAGTCTTGAAGATGGCCTTGGGAGGATTAAAGGCTTCTGTGAAAGGCATGCCAAGAAACAATAA

Protein Analysis

437

Amino Acids

48.32

Weight (kDa)

6.42

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 60 - 426 3.4e-54 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 890
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 2 cut(s) 106, 112
AccB7I CCANNNNNTGG 1 cut(s) 470
AciI CCGC 2 cut(s) 207, 1225
AclI AACGTT 1 cut(s) 1232
AclWI GGATC 1 cut(s) 778
AcsI RAATTY 2 cut(s) 76, 877
AfaI GTAC 5 cut(s) 108, 397, 742, 822, 1188
AfiI CCNNNNNNNGG 3 cut(s) 299, 470, 545
AgsI TTSAA 9 cut(s) 257, 410, 566, 661, 875, 994, 1213, 1251, 1259
AjnI CCWGG 5 cut(s) 116, 469, 619, 823, 1192
AjuI GAANNNNNNNTTGG 2 cut(s) 1251, 1283
AluBI AGCT 6 cut(s) 97, 103, 425, 569, 688, 1108
AluI AGCT 6 cut(s) 97, 103, 425, 569, 688, 1108
Alw21I GWGCWC 2 cut(s) 99, 972
Alw26I GTCTC 5 cut(s) 654, 668, 826, 914, 922
AlwI GGATC 1 cut(s) 778
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 2 cut(s) 467, 1264
ApeKI GCWGC 3 cut(s) 497, 947, 1019
ApoI RAATTY 2 cut(s) 76, 877
Asp700I GAANNNNTTC 2 cut(s) 261, 414
Asp718I GGTACC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 9
AsuHPI GGTGA 2 cut(s) 209, 357
AvaI CYCGRG 1 cut(s) 492
AxyI CCTNAGG 1 cut(s) 1080
BaeGI GKGCMC 1 cut(s) 1070
BanI GGYRCC 2 cut(s) 106, 112
BanII GRGCYC 1 cut(s) 99
BarI GAAGNNNNNNTAC 2 cut(s) 628, 660
Bbv12I GWGCWC 2 cut(s) 99, 972
BbvI GCAGC 3 cut(s) 509, 959, 1006
BccI CCATC 5 cut(s) 257, 732, 807, 857, 1256
BciT130I CCWGG 5 cut(s) 118, 471, 621, 825, 1194
BcoDI GTCTC 5 cut(s) 654, 668, 826, 914, 922
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 2 cut(s) 28, 1020
BisI GCNGC 3 cut(s) 498, 948, 1020
BlsI GCNGC 3 cut(s) 499, 949, 1021
BmcAI AGTACT 2 cut(s) 742, 1188
Bme1390I CCNGG 5 cut(s) 118, 471, 621, 825, 1194
BmeT110I CYCGRG 1 cut(s) 492
BmiI GGNNCC 3 cut(s) 108, 114, 1087
BmrFI CCNGG 5 cut(s) 118, 471, 621, 825, 1194
BmrI ACTGGG 1 cut(s) 776
BmsI GCATC 4 cut(s) 201, 235, 916, 996
BmuI ACTGGG 1 cut(s) 776
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpuEI CTTGAG 2 cut(s) 83, 593
BsaAI YACGTR 1 cut(s) 1065
BsaBI GATNNNNATC 1 cut(s) 848
BsaJI CCNNGG 4 cut(s) 116, 464, 603, 1267
BsaXI ACNNNNNCTCC 2 cut(s) 823, 853
Bsc4I CCNNNNNNNGG 3 cut(s) 299, 470, 545
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 3 cut(s) 585, 782, 1223
Bse21I CCTNAGG 1 cut(s) 1080
Bse8I GATNNNNATC 1 cut(s) 848
BseBI CCWGG 5 cut(s) 118, 471, 621, 825, 1194
BseDI CCNNGG 4 cut(s) 116, 464, 603, 1267
BseGI GGATG 4 cut(s) 398, 911, 931, 1132
BseJI GATNNNNATC 1 cut(s) 848
BseLI CCNNNNNNNGG 3 cut(s) 299, 470, 545
BseMII CTCAG 2 cut(s) 148, 1071
BseNI ACTGG 3 cut(s) 585, 782, 1223
BseRI GAGGAG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 1070
BseXI GCAGC 3 cut(s) 509, 959, 1006
Bsh1285I CGRYCG 1 cut(s) 269
BshFI GGCC 2 cut(s) 469, 1266
BshNI GGYRCC 2 cut(s) 106, 112
BsiEI CGRYCG 1 cut(s) 269
BsiHKAI GWGCWC 2 cut(s) 99, 972
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 2 cut(s) 764, 775
BslI CCNNNNNNNGG 3 cut(s) 299, 470, 545
BsmAI GTCTC 5 cut(s) 654, 668, 826, 914, 922
BsmBI CGTCTC 1 cut(s) 654
BsmFI GGGAC 2 cut(s) 764, 775
BsnI GGCC 2 cut(s) 469, 1266
BsoBI CYCGRG 1 cut(s) 492
Bsp1286I GDGCHC 3 cut(s) 99, 972, 1070
Bsp143I GATC 4 cut(s) 346, 529, 559, 770
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 2 cut(s) 207, 1225
BspANI GGCC 2 cut(s) 469, 1266
BspCNI CTCAG 2 cut(s) 147, 1072
BspLI GGNNCC 3 cut(s) 108, 114, 1087
BspMAI CTGCAG 1 cut(s) 1024
BspPI GGATC 1 cut(s) 778
BspT107I GGYRCC 2 cut(s) 106, 112
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 3 cut(s) 585, 782, 1223
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 4 cut(s) 116, 464, 603, 1267
BssMI GATC 4 cut(s) 346, 529, 559, 770
BssT1I CCWWGG 3 cut(s) 464, 603, 1267
Bst2UI CCWGG 5 cut(s) 118, 471, 621, 825, 1194
Bst4CI ACNGT 1 cut(s) 598
BstAPI GCANNNNNTGC 1 cut(s) 1065
BstBAI YACGTR 1 cut(s) 1065
BstC8I GCNNGC 2 cut(s) 402, 1299
BstDEI CTNAG 3 cut(s) 134, 1010, 1080
BstDSI CCRYGG 1 cut(s) 603
BstEII GGTNACC 1 cut(s) 197
BstF5I GGATG 4 cut(s) 398, 911, 931, 1132
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 4 cut(s) 349, 532, 562, 773
BstMAI GTCTC 5 cut(s) 654, 668, 826, 914, 922
BstMBI GATC 4 cut(s) 346, 529, 559, 770
BstMCI CGRYCG 1 cut(s) 269
BstMWI GCNNNNNNNGC 6 cut(s) 245, 320, 466, 575, 677, 1065
BstNI CCWGG 5 cut(s) 118, 471, 621, 825, 1194
BstNSI RCATGY 2 cut(s) 404, 1301
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 5 cut(s) 116, 469, 619, 823, 1192
BstSFI CTRYAG 2 cut(s) 28, 1020
BstSLI GKGCMC 1 cut(s) 1070
BstV1I GCAGC 3 cut(s) 509, 959, 1006
BstX2I RGATCY 1 cut(s) 770
BstYI RGATCY 1 cut(s) 770
Bsu36I CCTNAGG 1 cut(s) 1080
BsuRI GGCC 2 cut(s) 469, 1266
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 4 cut(s) 398, 911, 931, 1132
BtsIMutI CAGTG 1 cut(s) 578
Cac8I GCNNGC 2 cut(s) 402, 1299
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 109
CsiI ACCWGGT 2 cut(s) 823, 1192
Csp6I GTAC 5 cut(s) 107, 396, 741, 821, 1187
CviAII CATG 6 cut(s) 139, 216, 401, 604, 1090, 1298
CviQI GTAC 5 cut(s) 107, 396, 741, 821, 1187
DdeI CTNAG 3 cut(s) 134, 1010, 1080
DpnI GATC 4 cut(s) 348, 531, 561, 772
DpnII GATC 4 cut(s) 346, 529, 559, 770
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 3 cut(s) 464, 603, 1267
Eco147I AGGCCT 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 1080
Eco88I CYCGRG 1 cut(s) 492
Eco91I GGTNACC 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 197
EcoRII CCWGG 5 cut(s) 116, 469, 619, 823, 1192
EcoT14I CCWWGG 3 cut(s) 464, 603, 1267
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 3 cut(s) 464, 603, 1267
Esp3I CGTCTC 1 cut(s) 654
FaeI CATG 6 cut(s) 142, 219, 404, 607, 1093, 1301
FalI AAGNNNNNCTT 2 cut(s) 1251, 1283
FaqI GGGAC 2 cut(s) 764, 775
FatI CATG 6 cut(s) 138, 215, 400, 603, 1089, 1297
FauNDI CATATG 1 cut(s) 1028
Fnu4HI GCNGC 3 cut(s) 498, 948, 1020
FokI GGATG 4 cut(s) 405, 918, 938, 1139
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 3 cut(s) 498, 948, 1020
FspBI CTAG 1 cut(s) 228
GlaI GCGC 1 cut(s) 8
GluI GCNGC 3 cut(s) 498, 948, 1020
HaeIII GGCC 2 cut(s) 469, 1266
HapII CCGG 1 cut(s) 110
HhaI GCGC 1 cut(s) 9
Hin1II CATG 6 cut(s) 142, 219, 404, 607, 1093, 1301
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 6 cut(s) 121, 257, 694, 1051, 1111, 1175
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 209, 357
Hpy188I TCNGA 4 cut(s) 225, 420, 737, 925
Hpy188III TCNNGA 6 cut(s) 512, 539, 563, 572, 911, 1256
HpyAV CCTTC 2 cut(s) 213, 946
HpyCH4III ACNGT 1 cut(s) 598
HpyCH4IV ACGT 4 cut(s) 23, 647, 1064, 1232
HpyCH4V TGCA 7 cut(s) 148, 329, 404, 671, 866, 1022, 1059
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 320, 466, 575, 677, 1065
HpyF3I CTNAG 3 cut(s) 134, 1010, 1080
HpySE526I ACGT 4 cut(s) 23, 647, 1064, 1232
Hsp92II CATG 6 cut(s) 142, 219, 404, 607, 1093, 1301
HspAI GCGC 1 cut(s) 7
KpnI GGTACC 1 cut(s) 110
Kzo9I GATC 4 cut(s) 346, 529, 559, 770
LmnI GCTCC 1 cut(s) 934
Lsp1109I GCAGC 3 cut(s) 509, 959, 1006
LweI GCATC 4 cut(s) 201, 235, 916, 996
MabI ACCWGGT 2 cut(s) 823, 1192
MaeI CTAG 1 cut(s) 228
MaeII ACGT 4 cut(s) 23, 647, 1064, 1232
MaeIII GTNAC 4 cut(s) 197, 382, 854, 1241
MalI GATC 4 cut(s) 348, 531, 561, 772
MboI GATC 4 cut(s) 346, 529, 559, 770
MboII GAAGA 6 cut(s) 254, 673, 676, 863, 1225, 1271
MfeI CAATTG 3 cut(s) 297, 324, 405
MflI RGATCY 1 cut(s) 770
MhlI GDGCHC 3 cut(s) 99, 972, 1070
MmeI TCCRAC 4 cut(s) 809, 821, 956, 1104
MroXI GAANNNNTTC 2 cut(s) 261, 414
MseI TTAA 3 cut(s) 279, 1044, 1278
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 5 cut(s) 118, 471, 621, 825, 1194
MunI CAATTG 3 cut(s) 297, 324, 405
MvaI CCWGG 5 cut(s) 118, 471, 621, 825, 1194
MwoI GCNNNNNNNGC 6 cut(s) 245, 320, 466, 575, 677, 1065
NcoI CCATGG 1 cut(s) 603
NdeI CATATG 1 cut(s) 1028
NdeII GATC 4 cut(s) 346, 529, 559, 770
NlaIII CATG 6 cut(s) 142, 219, 404, 607, 1093, 1301
NlaIV GGNNCC 3 cut(s) 108, 114, 1087
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 3 cut(s) 197, 854, 1241
NspI RCATGY 2 cut(s) 404, 1301
PaeI GCATGC 2 cut(s) 404, 1301
PceI AGGCCT 1 cut(s) 469
PdmI GAANNNNTTC 2 cut(s) 261, 414
PfeI GAWTC 6 cut(s) 121, 257, 694, 1051, 1111, 1175
PflMI CCANNNNNTGG 1 cut(s) 470
PfoI TCCNGGA 1 cut(s) 619
PkrI GCNGC 3 cut(s) 499, 949, 1021
Ppu21I YACGTR 1 cut(s) 1065
PsiI TTATAA 1 cut(s) 890
Psp124BI GAGCTC 1 cut(s) 99
Psp1406I AACGTT 1 cut(s) 1232
Psp6I CCWGG 5 cut(s) 116, 469, 619, 823, 1192
PspEI GGTNACC 1 cut(s) 197
PspGI CCWGG 5 cut(s) 116, 469, 619, 823, 1192
PspN4I GGNNCC 3 cut(s) 108, 114, 1087
PstI CTGCAG 1 cut(s) 1024
PsuI RGATCY 1 cut(s) 770
RsaI GTAC 5 cut(s) 108, 397, 742, 822, 1188
RsaNI GTAC 5 cut(s) 107, 396, 741, 821, 1187
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 3 cut(s) 279, 1044, 1278
SatI GCNGC 3 cut(s) 498, 948, 1020
Sau3AI GATC 4 cut(s) 346, 529, 559, 770
ScaI AGTACT 2 cut(s) 742, 1188
ScrFI CCNGG 5 cut(s) 118, 471, 621, 825, 1194
SduI GDGCHC 3 cut(s) 99, 972, 1070
SexAI ACCWGGT 2 cut(s) 823, 1192
SfaNI GCATC 4 cut(s) 201, 235, 916, 996
SfcI CTRYAG 2 cut(s) 28, 1020
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 98, 572
SmoI CTYRAG 2 cut(s) 98, 572
SphI GCATGC 2 cut(s) 404, 1301
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 2 cut(s) 207, 1225
SspMI CTAG 1 cut(s) 228
SstI GAGCTC 1 cut(s) 99
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 5 cut(s) 116, 469, 619, 823, 1192
StyI CCWWGG 3 cut(s) 464, 603, 1267
TaaI ACNGT 1 cut(s) 598
TaiI ACGT 4 cut(s) 26, 650, 1067, 1235
TaqI TCGA 2 cut(s) 124, 912
TaqII GACCGA 1 cut(s) 255
TatI WGTACW 2 cut(s) 740, 1186
TfiI GAWTC 6 cut(s) 121, 257, 694, 1051, 1111, 1175
Tru1I TTAA 3 cut(s) 279, 1044, 1278
Tru9I TTAA 3 cut(s) 279, 1044, 1278
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 3 cut(s) 197, 854, 1241
TseI GCWGC 3 cut(s) 497, 947, 1019
Tsp45I GTSAC 3 cut(s) 197, 854, 1241
TspDTI ATGAA 4 cut(s) 603, 726, 928, 1143
TspRI CASTG 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 470
XapI RAATTY 2 cut(s) 76, 877
XceI RCATGY 2 cut(s) 404, 1301
XcmI CCANNNNNNNNNTGG 2 cut(s) 546, 1096
XmnI GAANNNNTTC 2 cut(s) 261, 414
XspI CTAG 1 cut(s) 228
ZrmI AGTACT 2 cut(s) 742, 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.