Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004272

Physical Location & Seq

Genomic Coordinates Reverse (-)

43556476 .. 43559973

Gene Structure 3498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGAGCTCAAACCGAAAACCACCAACCACAGTTCGAGGAGTTCTCACCATGATAATGCAAAATCTCAACAAAGATGATGAAAGGTCTGTCATTCCTTTAGGCCACGGTGACCCCTCCGCTTTCCCATGCTTTCGGACTAGTATTTCAGCCGAAGATGCCATCGTTGATTCTGTTCGGTCCGGCAAGTTTAACTGCTATTCTCCCGCAGTTGGTATTCTACCAGCAAGGAGGGCTATTGCAGATTATCTGTCAAATGATCTCCCATACAAGTTATCGCCTGACGATGTTTATCTTACAATTGGGTGCCAGGCTTCCCCTTACTATGAAACTCGTGCAGCCTGTTCCAATCTGGAAGTTCGTCGCTATGATCTGCTTCCGGAACAGGGTTGGGAGGTTGATCTTGAAACTCTTGAAGCACTTGCAGATGAAAATACTGTTGCCATGGTCATCATCAATCCTGGAAATCCTTGTGGAAATGTTTATACGTCTCAACATTTGAAGAAGATTGCAGAGACGGCAAGGAAGCTTGGGATTCTTGTAATTGCTGATGAAGTGTATGACCATCTTACTTTCGCAAATACCCCATTTGTGCCAATGGGGACATTTGGATCTGTTGTCCCAGTTCTTACACTTGGTTCTATATCAAAGAGATGGATTGTACCTGGTTGGAGACTTGGTTGGATTGTTACCTGTGACCCCAACGCAATTCTTCAAAAGTCGGGGGGGTACGTATCTCTTGCAGCAATTCCTCAAATTATAGAGAATACAAAGGAGGATTTCTTTTTGAAAATAGTTGAGATGCTACGAGGTGCTGCAGACTTATGTTTTGATAAACTTAATGAGATTCCTTGCATTACGTGCCCAAGCAAACCTGAGGGTTCCATGTTTGTAATGGTAAAGCTGAATCTCTCATTATTCGATGACATTAGTGATGATGTTGAGTTCAGCCTCAAACTTGCCAAAGAGGAATCTGTCATAGTACTACCTGGTGTGACTGTTGGATTGAAGAACTGGTTGCGGATTACATTTGCTTGTGACCATTCAATTCTTGAAGATGGCCTTGGGAGGATTAAAGGCTTCTGTGGAAGGCATGCCAAGAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

369

Amino Acids

40.66

Weight (kDa)

5.3

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	108 - 357	2.2e-36	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20610 AT2G20610 AT4G28420 AT4G28420
fragaria_vesca	FvH4_6g26600 FvH4_6g26600
malus_domestica	MD17G1234900.v1.1
pyrus_communis	pycom17g23830
rosa_chinensis	RchiOBHm_Chr2g0127471 RchiOBHm_Chr2g0127491
rosa_laevigata	RLG00000018960
rosa_multiflora	Rmu_sc0002811.1_g000011 Rmu_ssc0000018.1_g000037
rosa_roxburghii	Rroxscaffold_2G00116420 Rroxscaffold_2G00116430 Rroxscaffold_6G00391200 Rroxscaffold_6G00391210
rosa_rugosa	Rorug02G0274400.1 Rorug02G0274500 Rorug02G0274600 Rorug02G0274600 Rorug02G0274600 Rorug02G0274700
rosa_samantha	Rh2AG325600 Rh2AG325800 Rh2BG335300 Rh2BG335400 Rh2CG313500 Rh2CG313600 Rh2DG352900
rosa_wichuraiana	Rw2G026420 Rw2G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	3 cut(s)	120, 207, 1021
AclWI	GGATC	1 cut(s)	619
AfaI	GTAC	3 cut(s)	663, 731, 984
AfiI	CCNNNNNNNGG	2 cut(s)	212, 386
AgsI	TTSAA	8 cut(s)	407, 416, 502, 716, 790, 1009, 1047, 1055
AhlI	ACTAGT	1 cut(s)	140
AjnI	CCWGG	4 cut(s)	309, 460, 664, 988
AjuI	GAANNNNNNNTTGG	2 cut(s)	1047, 1079
AluBI	AGCT	3 cut(s)	9, 529, 904
AluI	AGCT	3 cut(s)	9, 529, 904
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	3 cut(s)	495, 509, 667
AlwI	GGATC	1 cut(s)	619
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	2 cut(s)	103, 1060
ApeKI	GCWGC	3 cut(s)	338, 743, 815
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	40, 122
AvaII	GGWCC	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	876
BaeGI	GKGCMC	1 cut(s)	866
BanI	GGYRCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	11
BauI	CACGAG	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	350, 755, 802
BccI	CCATC	4 cut(s)	170, 573, 648, 1052
BceAI	ACGGC	1 cut(s)	534
BciT130I	CCWGG	4 cut(s)	311, 462, 666, 990
BcoDI	GTCTC	3 cut(s)	495, 509, 667
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	816
BisI	GCNGC	3 cut(s)	339, 744, 816
BlsI	GCNGC	3 cut(s)	340, 745, 817
BmcAI	AGTACT	1 cut(s)	984
Bme1390I	CCNGG	4 cut(s)	311, 462, 666, 990
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	308, 883
BmrFI	CCNGG	4 cut(s)	311, 462, 666, 990
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	2 cut(s)	148, 792
BmuI	ACTGGG	1 cut(s)	617
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BsaAI	YACGTR	2 cut(s)	733, 861
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	106, 444, 1063
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 386
Bse1I	ACTGG	2 cut(s)	623, 1019
Bse21I	CCTNAGG	1 cut(s)	876
Bse8I	GATNNNNATC	1 cut(s)	291
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	4 cut(s)	311, 462, 666, 990
BseDI	CCNNGG	3 cut(s)	106, 444, 1063
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	212, 386
BseMII	CTCAG	1 cut(s)	867
BseNI	ACTGG	2 cut(s)	623, 1019
BseRI	GAGGAG	1 cut(s)	54
BseSI	GKGCMC	1 cut(s)	866
BseXI	GCAGC	3 cut(s)	350, 755, 802
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	105, 1062
BshNI	GGYRCC	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	183, 380
BslFI	GGGAC	2 cut(s)	605, 616
BslI	CCNNNNNNNGG	2 cut(s)	212, 386
BsmAI	GTCTC	3 cut(s)	495, 509, 667
BsmBI	CGTCTC	2 cut(s)	495, 509
BsmFI	GGGAC	2 cut(s)	605, 616
BsnI	GGCC	2 cut(s)	105, 1062
Bsp1286I	GDGCHC	2 cut(s)	11, 866
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	4 cut(s)	259, 370, 400, 611
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	3 cut(s)	120, 207, 1021
BspANI	GGCC	2 cut(s)	105, 1062
BspCNI	CTCAG	1 cut(s)	868
BspEI	TCCGGA	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	308, 883
BspMAI	CTGCAG	1 cut(s)	820
BspPI	GGATC	1 cut(s)	619
BspT107I	GGYRCC	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	623, 1019
BssECI	CCNNGG	3 cut(s)	106, 444, 1063
BssMI	GATC	4 cut(s)	259, 370, 400, 611
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	444, 1063
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	4 cut(s)	311, 462, 666, 990
Bst4CI	ACNGT	4 cut(s)	34, 110, 439, 1000
BstAPI	GCANNNNNTGC	1 cut(s)	861
BstBAI	YACGTR	2 cut(s)	733, 861
BstC8I	GCNNGC	1 cut(s)	1095
BstDEI	CTNAG	1 cut(s)	876
BstDSI	CCRYGG	2 cut(s)	106, 444
BstEII	GGTNACC	1 cut(s)	110
BstKTI	GATC	4 cut(s)	262, 373, 403, 614
BstMAI	GTCTC	3 cut(s)	495, 509, 667
BstMBI	GATC	4 cut(s)	259, 370, 400, 611
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 233, 518, 861
BstNI	CCWGG	4 cut(s)	311, 462, 666, 990
BstNSI	RCATGY	1 cut(s)	1097
BstPI	GGTNACC	1 cut(s)	110
BstSCI	CCNGG	4 cut(s)	309, 460, 664, 988
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	1 cut(s)	866
BstSNI	TACGTA	1 cut(s)	733
BstV1I	GCAGC	3 cut(s)	350, 755, 802
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
Bsu36I	CCTNAGG	1 cut(s)	876
BsuRI	GGCC	2 cut(s)	105, 1062
BtgI	CCRYGG	2 cut(s)	106, 444
Cac8I	GCNNGC	1 cut(s)	1095
Cfr13I	GGNCC	1 cut(s)	180
CpoI	CGGWCCG	1 cut(s)	180
CsiI	ACCWGGT	2 cut(s)	664, 988
Csp6I	GTAC	3 cut(s)	662, 730, 983
CspI	CGGWCCG	1 cut(s)	180
CviAII	CATG	5 cut(s)	52, 129, 445, 886, 1094
CviQI	GTAC	3 cut(s)	662, 730, 983
DdeI	CTNAG	1 cut(s)	876
DpnI	GATC	4 cut(s)	261, 372, 402, 613
DpnII	GATC	4 cut(s)	259, 370, 400, 611
Ecl136II	GAGCTC	1 cut(s)	9
Eco105I	TACGTA	1 cut(s)	733
Eco130I	CCWWGG	2 cut(s)	444, 1063
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	876
Eco91I	GGTNACC	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	9
EcoO65I	GGTNACC	1 cut(s)	110
EcoRII	CCWGG	4 cut(s)	309, 460, 664, 988
EcoT14I	CCWWGG	2 cut(s)	444, 1063
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	2 cut(s)	444, 1063
Esp3I	CGTCTC	2 cut(s)	495, 509
FaeI	CATG	5 cut(s)	55, 132, 448, 889, 1097
FalI	AAGNNNNNCTT	2 cut(s)	1047, 1079
FaqI	GGGAC	2 cut(s)	605, 616
FatI	CATG	5 cut(s)	51, 128, 444, 885, 1093
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	339, 744, 816
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	3 cut(s)	339, 744, 816
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	3 cut(s)	339, 744, 816
HaeIII	GGCC	2 cut(s)	105, 1062
HapII	CCGG	2 cut(s)	183, 380
Hin1II	CATG	5 cut(s)	55, 132, 448, 889, 1097
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	5 cut(s)	170, 535, 847, 907, 971
HpaII	CCGG	2 cut(s)	183, 380
HphI	GGTGA	2 cut(s)	40, 122
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	5 cut(s)	353, 380, 404, 413, 1052
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	1 cut(s)	1083
HpyCH4III	ACNGT	4 cut(s)	34, 110, 439, 1000
HpyCH4IV	ACGT	3 cut(s)	488, 732, 860
HpyCH4V	TGCA	8 cut(s)	61, 242, 338, 425, 512, 743, 818, 855
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 233, 518, 861
HpyF3I	CTNAG	1 cut(s)	876
HpySE526I	ACGT	3 cut(s)	488, 732, 860
Hsp92II	CATG	5 cut(s)	55, 132, 448, 889, 1097
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	259, 370, 400, 611
Lsp1109I	GCAGC	3 cut(s)	350, 755, 802
LweI	GCATC	2 cut(s)	148, 792
MabI	ACCWGGT	2 cut(s)	664, 988
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	3 cut(s)	488, 732, 860
MaeIII	GTNAC	5 cut(s)	110, 688, 695, 994, 1037
MalI	GATC	4 cut(s)	261, 372, 402, 613
MboI	GATC	4 cut(s)	259, 370, 400, 611
MboII	GAAGA	6 cut(s)	167, 514, 517, 704, 1021, 1067
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	2 cut(s)	11, 866
MluCI	AATT	6 cut(s)	300, 543, 708, 747, 756, 1047
MmeI	TCCRAC	3 cut(s)	650, 662, 982
MroI	TCCGGA	1 cut(s)	379
MseI	TTAA	3 cut(s)	192, 840, 1074
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	2 cut(s)	183, 380
MspR9I	CCNGG	4 cut(s)	311, 462, 666, 990
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	4 cut(s)	311, 462, 666, 990
MwoI	GCNNNNNNNGC	4 cut(s)	158, 233, 518, 861
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	4 cut(s)	259, 370, 400, 611
NlaIII	CATG	5 cut(s)	55, 132, 448, 889, 1097
NlaIV	GGNNCC	2 cut(s)	308, 883
NmuCI	GTSAC	4 cut(s)	110, 695, 994, 1037
NspI	RCATGY	1 cut(s)	1097
PaeI	GCATGC	1 cut(s)	1097
PfeI	GAWTC	5 cut(s)	170, 535, 847, 907, 971
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	340, 745, 817
Ppu21I	YACGTR	2 cut(s)	733, 861
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	4 cut(s)	309, 460, 664, 988
PspEI	GGTNACC	1 cut(s)	110
PspGI	CCWGG	4 cut(s)	309, 460, 664, 988
PspN4I	GGNNCC	2 cut(s)	308, 883
PspPI	GGNCC	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	820
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	3 cut(s)	663, 731, 984
RsaNI	GTAC	3 cut(s)	662, 730, 983
RseI	CAYNNNNRTG	1 cut(s)	56
Rsr2I	CGGWCCG	1 cut(s)	180
RsrII	CGGWCCG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	192, 840, 1074
SatI	GCNGC	3 cut(s)	339, 744, 816
Sau3AI	GATC	4 cut(s)	259, 370, 400, 611
Sau96I	GGNCC	1 cut(s)	180
ScaI	AGTACT	1 cut(s)	984
ScrFI	CCNGG	4 cut(s)	311, 462, 666, 990
SduI	GDGCHC	2 cut(s)	11, 866
SexAI	ACCWGGT	2 cut(s)	664, 988
SfaNI	GCATC	2 cut(s)	148, 792
SfcI	CTRYAG	1 cut(s)	816
SinI	GGWCC	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	56
SnaBI	TACGTA	1 cut(s)	733
SpeI	ACTAGT	1 cut(s)	140
SphI	GCATGC	1 cut(s)	1097
Sse9I	AATT	6 cut(s)	300, 543, 708, 747, 756, 1047
SsiI	CCGC	3 cut(s)	120, 207, 1021
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	4 cut(s)	309, 460, 664, 988
StyI	CCWWGG	2 cut(s)	444, 1063
TaaI	ACNGT	4 cut(s)	34, 110, 439, 1000
TaiI	ACGT	3 cut(s)	491, 735, 863
TaqI	TCGA	2 cut(s)	37, 921
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	6 cut(s)	300, 543, 708, 747, 756, 1047
TatI	WGTACW	1 cut(s)	982
TfiI	GAWTC	5 cut(s)	170, 535, 847, 907, 971
Tru1I	TTAA	3 cut(s)	192, 840, 1074
Tru9I	TTAA	3 cut(s)	192, 840, 1074
TseFI	GTSAC	4 cut(s)	110, 695, 994, 1037
TseI	GCWGC	3 cut(s)	338, 743, 815
Tsp45I	GTSAC	4 cut(s)	110, 695, 994, 1037
TspDTI	ATGAA	4 cut(s)	96, 342, 444, 567
VpaK11BI	GGWCC	1 cut(s)	180
XceI	RCATGY	1 cut(s)	1097
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XspI	CTAG	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.