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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G04235 AT2G04235 AT2G04235 AT2G04235 |
| fragaria_vesca | FvH4_6g40370 FvH4_6g40370 |
| malus_domestica | MD09G1131900.v1.1 MD09G1132300.v1.1 MD09G1132400.v1.1 MD17G1119600.v1.1 |
| prunus_persica | Prupe.3G194100_v2.0.a1 Prupe.3G194100_v2.0.a1 Prupe.3G194100_v2.0.a1 |
| pyrus_communis | pycom09g05380 pycom17g11000 |
| rosa_chinensis | RchiOBHm_Chr2g0155571 |
| rosa_laevigata | RLG00000020846 |
| rosa_multiflora | Rmu_co8276615.1_g000001 Rmu_sc0003439.1_g000001 Rmu_sc0003971.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00093640 |
| rosa_rugosa | Rorug02G0447700 Rorug02G0447800 Rorug02G0447900 Rorug02G0448000 |
| rosa_samantha | Rh2AG514400 Rh2BG525200 Rh2CG499300 Rh2DG534100 |
| rosa_wichuraiana | Rw2G042260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 544, 3536 |
| AatII | GACGTC | 2 cut(s) | 548, 999 |
| Acc36I | ACCTGC | 1 cut(s) | 3297 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 649, 3254 |
| AccBSI | CCGCTC | 1 cut(s) | 325 |
| AccII | CGCG | 2 cut(s) | 93, 141 |
| AcoI | YGGCCR | 1 cut(s) | 868 |
| AcsI | RAATTY | 8 cut(s) | 1103, 1258, 1732, 2738, 2788, 3347, 3549, 3658 |
| AcyI | GRCGYC | 2 cut(s) | 545, 996 |
| AdeI | CACNNNGTG | 1 cut(s) | 3066 |
| AfaI | GTAC | 6 cut(s) | 725, 898, 1558, 2305, 2572, 3948 |
| AflII | CTTAAG | 1 cut(s) | 3016 |
| AflIII | ACRYGT | 1 cut(s) | 3767 |
| AgeI | ACCGGT | 1 cut(s) | 1777 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1000 |
| AjiI | CACGTC | 1 cut(s) | 3619 |
| AjnI | CCWGG | 9 cut(s) | 355, 421, 1239, 1448, 2026, 2150, 2584, 3816, 3939 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2176, 2208, 2505, 2537 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3485, 3517 |
| Alw21I | GWGCWC | 1 cut(s) | 2866 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 521, 3046 |
| Ama87I | CYCGRG | 3 cut(s) | 2429, 2555, 2743 |
| AoxI | GGCC | 5 cut(s) | 3, 868, 2132, 2369, 3483 |
| ApeKI | GCWGC | 8 cut(s) | 440, 2589, 2932, 3634, 3709, 3833, 3878, 3881 |
| ApoI | RAATTY | 8 cut(s) | 1103, 1258, 1732, 2738, 2788, 3347, 3549, 3658 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 374, 406, 2155, 2187 |
| AseI | ATTAAT | 2 cut(s) | 1511, 2445 |
| AsiGI | ACCGGT | 1 cut(s) | 1777 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3485 |
| AspLEI | GCGC | 5 cut(s) | 93, 224, 2988, 3161, 3574 |
| AspS9I | GGNCC | 7 cut(s) | 13, 395, 1317, 1830, 2132, 2581, 3428 |
| AsuC2I | CCSGG | 2 cut(s) | 50, 88 |
| AsuHPI | GGTGA | 9 cut(s) | 109, 689, 1649, 2702, 3052, 3064, 3140, 3269, 3532 |
| AvaI | CYCGRG | 3 cut(s) | 2429, 2555, 2743 |
| AvaII | GGWCC | 6 cut(s) | 13, 395, 1317, 1830, 2581, 3428 |
| BamHI | GGATCC | 1 cut(s) | 3902 |
| BanII | GRGCYC | 3 cut(s) | 180, 2093, 2201 |
| BauI | CACGAG | 1 cut(s) | 1476 |
| BbsI | GAAGAC | 7 cut(s) | 387, 542, 578, 687, 742, 1282, 3296 |
| Bbv12I | GWGCWC | 1 cut(s) | 2866 |
| BbvCI | CCTCAGC | 1 cut(s) | 3885 |
| BbvI | GCAGC | 8 cut(s) | 452, 2601, 2919, 3646, 3721, 3845, 3865, 3893 |
| BccI | CCATC | 9 cut(s) | 1030, 1435, 1490, 2143, 2155, 2380, 2555, 3182, 3694 |
| BceAI | ACGGC | 1 cut(s) | 214 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3623, 3657 |
| BciT130I | CCWGG | 9 cut(s) | 357, 423, 1241, 1450, 2028, 2152, 2586, 3818, 3941 |
| BciVI | GTATCC | 2 cut(s) | 1215, 1434 |
| BclI | TGATCA | 2 cut(s) | 3280, 3694 |
| BcnI | CCSGG | 2 cut(s) | 50, 88 |
| BfmI | CTRYAG | 7 cut(s) | 225, 2230, 3024, 3304, 3707, 3831, 3879 |
| BfoI | RGCGCY | 2 cut(s) | 225, 2989 |
| BfrI | CTTAAG | 1 cut(s) | 3016 |
| BfuAI | ACCTGC | 1 cut(s) | 3297 |
| BfuI | GTATCC | 2 cut(s) | 1215, 1434 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 764 |
| BglII | AGATCT | 2 cut(s) | 877, 1582 |
| BmcAI | AGTACT | 2 cut(s) | 898, 1558 |
| Bme18I | GGWCC | 6 cut(s) | 13, 395, 1317, 1830, 2581, 3428 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1000 |
| BmeT110I | CYCGRG | 3 cut(s) | 2429, 2555, 2743 |
| BmgBI | CACGTC | 1 cut(s) | 3619 |
| BmgT120I | GGNCC | 7 cut(s) | 13, 395, 1317, 1830, 2132, 2581, 3428 |
| BmrI | ACTGGG | 7 cut(s) | 585, 637, 1694, 2035, 2629, 3058, 3138 |
| BmsI | GCATC | 6 cut(s) | 1189, 1846, 2497, 2901, 3033, 3457 |
| BmuI | ACTGGG | 7 cut(s) | 585, 637, 1694, 2035, 2629, 3058, 3138 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1348 |
| BpiI | GAAGAC | 7 cut(s) | 387, 542, 578, 687, 742, 1282, 3296 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 104, 136 |
| BpmI | CTGGAG | 2 cut(s) | 543, 1664 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3885 |
| BpuEI | CTTGAG | 1 cut(s) | 2189 |
| BpuMI | CCSGG | 2 cut(s) | 50, 88 |
| BsaAI | YACGTR | 1 cut(s) | 719 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1203, 2463, 3901 |
| BsaHI | GRCGYC | 2 cut(s) | 545, 996 |
| BsaI | GGTCTC | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 8 cut(s) | 648, 1240, 2178, 2192, 2543, 2584, 3543, 3939 |
| BsaWI | WCCGGW | 1 cut(s) | 1777 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 137, 167, 825, 855, 1381, 1411, 3314, 3344 |
| Bse118I | RCCGGY | 2 cut(s) | 1028, 1777 |
| Bse1I | ACTGG | 9 cut(s) | 591, 643, 796, 803, 1700, 2041, 2635, 3064, 3144 |
| Bse3DI | GCAATG | 2 cut(s) | 488, 3168 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1203, 2463, 3901 |
| BseBI | CCWGG | 9 cut(s) | 357, 423, 1241, 1450, 2028, 2152, 2586, 3818, 3941 |
| BseDI | CCNNGG | 8 cut(s) | 648, 1240, 2178, 2192, 2543, 2584, 3543, 3939 |
| BseGI | GGATG | 9 cut(s) | 247, 1018, 1535, 1732, 2078, 2147, 2449, 2566, 3343 |
| BseJI | GATNNNNATC | 3 cut(s) | 1203, 2463, 3901 |
| BseMI | GCAATG | 2 cut(s) | 488, 3168 |
| BseNI | ACTGG | 9 cut(s) | 591, 643, 796, 803, 1700, 2041, 2635, 3064, 3144 |
| BseRI | GAGGAG | 3 cut(s) | 299, 1464, 1956 |
| BseXI | GCAGC | 8 cut(s) | 452, 2601, 2919, 3646, 3721, 3845, 3865, 3893 |
| BseYI | CCCAGC | 1 cut(s) | 1833 |
| BsgI | GTGCAG | 2 cut(s) | 1998, 3653 |
| Bsh1236I | CGCG | 2 cut(s) | 93, 141 |
| Bsh1285I | CGRYCG | 1 cut(s) | 323 |
| BshFI | GGCC | 5 cut(s) | 5, 870, 2134, 2371, 3485 |
| BshTI | ACCGGT | 1 cut(s) | 1777 |
| BsiEI | CGRYCG | 1 cut(s) | 323 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2866 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2429, 2555, 2743 |
| BsiSI | CCGG | 5 cut(s) | 50, 88, 212, 1029, 1778 |
| BslFI | GGGAC | 5 cut(s) | 598, 2211, 2484, 2567, 3841 |
| BsmBI | CGTCTC | 3 cut(s) | 1003, 2846, 3103 |
| BsmFI | GGGAC | 5 cut(s) | 598, 2211, 2484, 2567, 3841 |
| BsmI | GAATGC | 3 cut(s) | 555, 1381, 1983 |
| BsnI | GGCC | 5 cut(s) | 5, 870, 2134, 2371, 3485 |
| Bso31I | GGTCTC | 1 cut(s) | 35 |
| BsoBI | CYCGRG | 3 cut(s) | 2429, 2555, 2743 |
| Bsp1286I | GDGCHC | 4 cut(s) | 180, 2093, 2201, 2866 |
| Bsp1407I | TGTACA | 1 cut(s) | 2570 |
| BspANI | GGCC | 5 cut(s) | 5, 870, 2134, 2371, 3485 |
| BspFNI | CGCG | 2 cut(s) | 93, 141 |
| BspHI | TCATGA | 4 cut(s) | 457, 922, 3277, 3477 |
| BspMAI | CTGCAG | 5 cut(s) | 3028, 3308, 3711, 3835, 3883 |
| BspMI | ACCTGC | 1 cut(s) | 3297 |
| BspQI | GCTCTTC | 1 cut(s) | 2313 |
| BspTI | CTTAAG | 1 cut(s) | 3016 |
| BspTNI | GGTCTC | 1 cut(s) | 35 |
| BsrBI | CCGCTC | 1 cut(s) | 325 |
| BsrDI | GCAATG | 2 cut(s) | 488, 3168 |
| BsrFI | RCCGGY | 2 cut(s) | 1028, 1777 |
| BsrGI | TGTACA | 1 cut(s) | 2570 |
| BsrI | ACTGG | 9 cut(s) | 591, 643, 796, 803, 1700, 2041, 2635, 3064, 3144 |
| BssAI | RCCGGY | 2 cut(s) | 1028, 1777 |
| BssECI | CCNNGG | 8 cut(s) | 648, 1240, 2178, 2192, 2543, 2584, 3543, 3939 |
| BssNI | GRCGYC | 2 cut(s) | 545, 996 |
| BssSI | CACGAG | 1 cut(s) | 1476 |
| BssT1I | CCWWGG | 5 cut(s) | 648, 2178, 2192, 2543, 3543 |
| Bst2BI | CACGAG | 1 cut(s) | 1476 |
| Bst2UI | CCWGG | 9 cut(s) | 357, 423, 1241, 1450, 2028, 2152, 2586, 3818, 3941 |
| Bst4CI | ACNGT | 8 cut(s) | 825, 1393, 1561, 1741, 1751, 2570, 3114, 3855 |
| Bst6I | CTCTTC | 5 cut(s) | 1194, 1643, 1655, 2313, 3770 |
| BstACI | GRCGYC | 2 cut(s) | 545, 996 |
| BstAFI | CTTAAG | 1 cut(s) | 3016 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2974 |
| BstAUI | TGTACA | 1 cut(s) | 2570 |
| BstBAI | YACGTR | 1 cut(s) | 719 |
| BstC8I | GCNNGC | 2 cut(s) | 1981, 3639 |
| BstEII | GGTNACC | 1 cut(s) | 3538 |
| BstF5I | GGATG | 9 cut(s) | 247, 1018, 1535, 1732, 2078, 2147, 2449, 2566, 3343 |
| BstFNI | CGCG | 2 cut(s) | 93, 141 |
| BstH2I | RGCGCY | 2 cut(s) | 225, 2989 |
| BstHHI | GCGC | 5 cut(s) | 93, 224, 2988, 3161, 3574 |
| BstMCI | CGRYCG | 1 cut(s) | 323 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 90, 255, 331, 357, 764, 2974, 2983, 3706 |
| BstNI | CCWGG | 9 cut(s) | 357, 423, 1241, 1450, 2028, 2152, 2586, 3818, 3941 |
| BstNSI | RCATGY | 1 cut(s) | 3771 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1348 |
| BstPI | GGTNACC | 1 cut(s) | 3538 |
| BstSFI | CTRYAG | 7 cut(s) | 225, 2230, 3024, 3304, 3707, 3831, 3879 |
| BstUI | CGCG | 2 cut(s) | 93, 141 |
| BstV1I | GCAGC | 8 cut(s) | 452, 2601, 2919, 3646, 3721, 3845, 3865, 3893 |
| BstV2I | GAAGAC | 7 cut(s) | 387, 542, 578, 687, 742, 1282, 3296 |
| BstX2I | RGATCY | 8 cut(s) | 781, 877, 1582, 2347, 3798, 3813, 3896, 3902 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3413 |
| BstYI | RGATCY | 8 cut(s) | 781, 877, 1582, 2347, 3798, 3813, 3896, 3902 |
| BsuI | GTATCC | 2 cut(s) | 1215, 1434 |
| BsuRI | GGCC | 5 cut(s) | 5, 870, 2134, 2371, 3485 |
| BtrI | CACGTC | 1 cut(s) | 3619 |
| BtsCI | GGATG | 9 cut(s) | 247, 1018, 1535, 1732, 2078, 2147, 2449, 2566, 3343 |
| BtsIMutI | CAGTG | 5 cut(s) | 598, 1092, 1398, 3071, 3151 |
| BveI | ACCTGC | 1 cut(s) | 3297 |
| Cac8I | GCNNGC | 2 cut(s) | 1981, 3639 |
| CaiI | CAGNNNCTG | 2 cut(s) | 521, 3046 |
| CciI | TCATGA | 4 cut(s) | 457, 922, 3277, 3477 |
| CfoI | GCGC | 5 cut(s) | 93, 224, 2988, 3161, 3574 |
| Cfr10I | RCCGGY | 2 cut(s) | 1028, 1777 |
| Cfr13I | GGNCC | 7 cut(s) | 13, 395, 1317, 1830, 2132, 2581, 3428 |
| CseI | GACGC | 1 cut(s) | 2863 |
| Csp6I | GTAC | 6 cut(s) | 724, 897, 1557, 2304, 2571, 3947 |
| CspAI | ACCGGT | 1 cut(s) | 1777 |
| CviQI | GTAC | 6 cut(s) | 724, 897, 1557, 2304, 2571, 3947 |
| DraI | TTTAAA | 2 cut(s) | 1236, 2793 |
| DraIII | CACNNNGTG | 1 cut(s) | 3066 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 544, 3536 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1000 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 544, 3536 |
| EaeI | YGGCCR | 1 cut(s) | 868 |
| Eam1104I | CTCTTC | 5 cut(s) | 1194, 1643, 1655, 2313, 3770 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1000 |
| EarI | CTCTTC | 5 cut(s) | 1194, 1643, 1655, 2313, 3770 |
| EciI | GGCGGA | 2 cut(s) | 125, 193 |
| Eco130I | CCWWGG | 5 cut(s) | 648, 2178, 2192, 2543, 3543 |
| Eco147I | AGGCCT | 1 cut(s) | 3485 |
| Eco24I | GRGCYC | 3 cut(s) | 180, 2093, 2201 |
| Eco31I | GGTCTC | 1 cut(s) | 35 |
| Eco32I | GATATC | 2 cut(s) | 530, 2818 |
| Eco47I | GGWCC | 6 cut(s) | 13, 395, 1317, 1830, 2581, 3428 |
| Eco88I | CYCGRG | 3 cut(s) | 2429, 2555, 2743 |
| Eco91I | GGTNACC | 1 cut(s) | 3538 |
| EcoO109I | RGGNCCY | 2 cut(s) | 13, 1830 |
| EcoO65I | GGTNACC | 1 cut(s) | 3538 |
| EcoRII | CCWGG | 9 cut(s) | 355, 421, 1239, 1448, 2026, 2150, 2584, 3816, 3939 |
| EcoRV | GATATC | 2 cut(s) | 530, 2818 |
| EcoT14I | CCWWGG | 5 cut(s) | 648, 2178, 2192, 2543, 3543 |
| EcoT38I | GRGCYC | 3 cut(s) | 180, 2093, 2201 |
| ErhI | CCWWGG | 5 cut(s) | 648, 2178, 2192, 2543, 3543 |
| Esp3I | CGTCTC | 3 cut(s) | 1003, 2846, 3103 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1908, 1940, 3041, 3073 |
| FaqI | GGGAC | 5 cut(s) | 598, 2211, 2484, 2567, 3841 |
| FbaI | TGATCA | 2 cut(s) | 3280, 3694 |
| FokI | GGATG | 9 cut(s) | 254, 1005, 1522, 1739, 2065, 2134, 2436, 2573, 3350 |
| FriOI | GRGCYC | 3 cut(s) | 180, 2093, 2201 |
| GlaI | GCGC | 5 cut(s) | 92, 223, 2987, 3160, 3573 |
| GsaI | CCCAGC | 1 cut(s) | 1837 |
| GsuI | CTGGAG | 2 cut(s) | 543, 1664 |
| HaeII | RGCGCY | 2 cut(s) | 225, 2989 |
| HaeIII | GGCC | 5 cut(s) | 5, 870, 2134, 2371, 3485 |
| HapII | CCGG | 5 cut(s) | 50, 88, 212, 1029, 1778 |
| HgaI | GACGC | 1 cut(s) | 2863 |
| HhaI | GCGC | 5 cut(s) | 93, 224, 2988, 3161, 3574 |
| Hin1I | GRCGYC | 2 cut(s) | 545, 996 |
| Hin6I | GCGC | 5 cut(s) | 91, 222, 2986, 3159, 3572 |
| HinP1I | GCGC | 5 cut(s) | 91, 222, 2986, 3159, 3572 |
| HincII | GTYRAC | 4 cut(s) | 1672, 1705, 2887, 3343 |
| HindII | GTYRAC | 4 cut(s) | 1672, 1705, 2887, 3343 |
| HindIII | AAGCTT | 2 cut(s) | 2267, 3180 |
| HpaI | GTTAAC | 2 cut(s) | 1672, 1705 |
| HpaII | CCGG | 5 cut(s) | 50, 88, 212, 1029, 1778 |
| HphI | GGTGA | 9 cut(s) | 109, 689, 1649, 2702, 3052, 3064, 3140, 3269, 3532 |
| Hpy166II | GTNNAC | 9 cut(s) | 127, 1672, 1705, 2009, 2887, 3055, 3131, 3343, 3596 |
| Hpy8I | GTNNAC | 9 cut(s) | 127, 1672, 1705, 2009, 2887, 3055, 3131, 3343, 3596 |
| HpyCH4III | ACNGT | 8 cut(s) | 825, 1393, 1561, 1741, 1751, 2570, 3114, 3855 |
| HpyCH4IV | ACGT | 8 cut(s) | 545, 718, 996, 1591, 2527, 3316, 3592, 3618 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 90, 255, 331, 357, 764, 2974, 2983, 3706 |
| HpySE526I | ACGT | 8 cut(s) | 545, 718, 996, 1591, 2527, 3316, 3592, 3618 |
| Hsp92I | GRCGYC | 2 cut(s) | 545, 996 |
| HspAI | GCGC | 5 cut(s) | 91, 222, 2986, 3159, 3572 |
| Ksp22I | TGATCA | 2 cut(s) | 3280, 3694 |
| KspAI | GTTAAC | 2 cut(s) | 1672, 1705 |
| LguI | GCTCTTC | 1 cut(s) | 2313 |
| LmnI | GCTCC | 7 cut(s) | 89, 206, 1552, 1798, 2116, 2196, 3145 |
| Lsp1109I | GCAGC | 8 cut(s) | 452, 2601, 2919, 3646, 3721, 3845, 3865, 3893 |
| LweI | GCATC | 6 cut(s) | 1189, 1846, 2497, 2901, 3033, 3457 |
| MaeII | ACGT | 8 cut(s) | 545, 718, 996, 1591, 2527, 3316, 3592, 3618 |
| MbiI | CCGCTC | 1 cut(s) | 325 |
| MfeI | CAATTG | 2 cut(s) | 1997, 2759 |
| MflI | RGATCY | 8 cut(s) | 781, 877, 1582, 2347, 3798, 3813, 3896, 3902 |
| MhlI | GDGCHC | 4 cut(s) | 180, 2093, 2201, 2866 |
| MmeI | TCCRAC | 4 cut(s) | 180, 387, 396, 3455 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3485 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1325, 2454, 2616, 2688, 3601 |
| MspA1I | CMGCKG | 3 cut(s) | 1807, 3637, 3884 |
| MspCI | CTTAAG | 1 cut(s) | 3016 |
| MspI | CCGG | 5 cut(s) | 50, 88, 212, 1029, 1778 |
| MunI | CAATTG | 2 cut(s) | 1997, 2759 |
| Mva1269I | GAATGC | 3 cut(s) | 555, 1381, 1983 |
| MvaI | CCWGG | 9 cut(s) | 357, 423, 1241, 1450, 2028, 2152, 2586, 3818, 3941 |
| MvnI | CGCG | 2 cut(s) | 93, 141 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 90, 255, 331, 357, 764, 2974, 2983, 3706 |
| NciI | CCSGG | 2 cut(s) | 50, 88 |
| NmeAIII | GCCGAG | 1 cut(s) | 232 |
| NmuCI | GTSAC | 8 cut(s) | 1393, 1592, 1741, 1769, 2669, 3257, 3538, 3745 |
| NspI | RCATGY | 1 cut(s) | 3771 |
| PaeR7I | CTCGAG | 1 cut(s) | 2555 |
| PagI | TCATGA | 4 cut(s) | 457, 922, 3277, 3477 |
| PceI | AGGCCT | 1 cut(s) | 3485 |
| PciI | ACATGT | 1 cut(s) | 3767 |
| PciSI | GCTCTTC | 1 cut(s) | 2313 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 108, 153, 204, 288, 338 |
| PctI | GAATGC | 3 cut(s) | 555, 1381, 1983 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3485 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 649, 3254 |
| PfoI | TCCNGGA | 1 cut(s) | 2150 |
| PinAI | ACCGGT | 1 cut(s) | 1777 |
| Ppu21I | YACGTR | 1 cut(s) | 719 |
| PpuMI | RGGWCCY | 2 cut(s) | 13, 1830 |
| PscI | ACATGT | 1 cut(s) | 3767 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1348 |
| PshBI | ATTAAT | 2 cut(s) | 1511, 2445 |
| Psp5II | RGGWCCY | 2 cut(s) | 13, 1830 |
| Psp6I | CCWGG | 9 cut(s) | 355, 421, 1239, 1448, 2026, 2150, 2584, 3816, 3939 |
| PspEI | GGTNACC | 1 cut(s) | 3538 |
| PspFI | CCCAGC | 1 cut(s) | 1833 |
| PspGI | CCWGG | 9 cut(s) | 355, 421, 1239, 1448, 2026, 2150, 2584, 3816, 3939 |
| PspPI | GGNCC | 7 cut(s) | 13, 395, 1317, 1830, 2132, 2581, 3428 |
| PspPPI | RGGWCCY | 2 cut(s) | 13, 1830 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1108, 1140 |
| PstI | CTGCAG | 5 cut(s) | 3028, 3308, 3711, 3835, 3883 |
| PstNI | CAGNNNCTG | 2 cut(s) | 521, 3046 |
| PsuI | RGATCY | 8 cut(s) | 781, 877, 1582, 2347, 3798, 3813, 3896, 3902 |
| PvuII | CAGCTG | 3 cut(s) | 1807, 3637, 3884 |
| RsaI | GTAC | 6 cut(s) | 725, 898, 1558, 2305, 2572, 3948 |
| RsaNI | GTAC | 6 cut(s) | 724, 897, 1557, 2304, 2571, 3947 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1325, 2454, 2616, 2688, 3601 |
| SapI | GCTCTTC | 1 cut(s) | 2313 |
| Sau96I | GGNCC | 7 cut(s) | 13, 395, 1317, 1830, 2132, 2581, 3428 |
| ScaI | AGTACT | 2 cut(s) | 898, 1558 |
| SduI | GDGCHC | 4 cut(s) | 180, 2093, 2201, 2866 |
| SfaNI | GCATC | 6 cut(s) | 1189, 1846, 2497, 2901, 3033, 3457 |
| SfcI | CTRYAG | 7 cut(s) | 225, 2230, 3024, 3304, 3707, 3831, 3879 |
| Sfr274I | CTCGAG | 1 cut(s) | 2555 |
| SinI | GGWCC | 6 cut(s) | 13, 395, 1317, 1830, 2581, 3428 |
| SlaI | CTCGAG | 1 cut(s) | 2555 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1325, 2454, 2616, 2688, 3601 |
| SmlI | CTYRAG | 3 cut(s) | 2204, 2555, 3016 |
| SmoI | CTYRAG | 3 cut(s) | 2204, 2555, 3016 |
| SseBI | AGGCCT | 1 cut(s) | 3485 |
| SspI | AATATT | 2 cut(s) | 1291, 2643 |
| StuI | AGGCCT | 1 cut(s) | 3485 |
| StyI | CCWWGG | 5 cut(s) | 648, 2178, 2192, 2543, 3543 |
| TaaI | ACNGT | 8 cut(s) | 825, 1393, 1561, 1741, 1751, 2570, 3114, 3855 |
| TaiI | ACGT | 8 cut(s) | 548, 721, 999, 1594, 2530, 3319, 3595, 3621 |
| TaqI | TCGA | 7 cut(s) | 660, 686, 1526, 2556, 2696, 3643, 3759 |
| TaqII | GACCGA | 1 cut(s) | 59 |
| TatI | WGTACW | 3 cut(s) | 896, 1556, 2570 |
| TauI | GCSGC | 4 cut(s) | 28, 141, 252, 873 |
| TscAI | CASTG | 5 cut(s) | 598, 1099, 1398, 3071, 3151 |
| TseFI | GTSAC | 8 cut(s) | 1393, 1592, 1741, 1769, 2669, 3257, 3538, 3745 |
| TseI | GCWGC | 8 cut(s) | 440, 2589, 2932, 3634, 3709, 3833, 3878, 3881 |
| Tsp45I | GTSAC | 8 cut(s) | 1393, 1592, 1741, 1769, 2669, 3257, 3538, 3745 |
| TspGWI | ACGGA | 4 cut(s) | 112, 1027, 1760, 3780 |
| TspRI | CASTG | 5 cut(s) | 598, 1099, 1398, 3071, 3151 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 649, 3254 |
| Vha464I | CTTAAG | 1 cut(s) | 3016 |
| VpaK11BI | GGWCC | 6 cut(s) | 13, 395, 1317, 1830, 2581, 3428 |
| VspI | ATTAAT | 2 cut(s) | 1511, 2445 |
| XapI | RAATTY | 8 cut(s) | 1103, 1258, 1732, 2738, 2788, 3347, 3549, 3658 |
| XceI | RCATGY | 1 cut(s) | 3771 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3413 |
| XhoI | CTCGAG | 1 cut(s) | 2555 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3485 |
| ZraI | GACGTC | 2 cut(s) | 546, 997 |
| ZrmI | AGTACT | 2 cut(s) | 898, 1558 |