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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G04235 AT2G04235 AT2G04235 AT2G04235 |
| fragaria_vesca | FvH4_6g40370 FvH4_6g40370 |
| malus_domestica | MD09G1131900.v1.1 MD09G1132300.v1.1 MD09G1132400.v1.1 MD17G1119600.v1.1 |
| prunus_persica | Prupe.3G194100_v2.0.a1 Prupe.3G194100_v2.0.a1 Prupe.3G194100_v2.0.a1 |
| pyrus_communis | pycom09g05380 pycom17g11000 |
| rosa_chinensis | RchiOBHm_Chr2g0155571 |
| rosa_laevigata | RLG00000020846 |
| rosa_multiflora | Rmu_co8276615.1_g000001 Rmu_sc0003439.1_g000001 Rmu_sc0003971.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00093640 |
| rosa_rugosa | Rorug02G0447700 Rorug02G0447800 Rorug02G0447900 Rorug02G0448000 |
| rosa_samantha | Rh2AG514400 Rh2BG525200 Rh2CG499300 Rh2DG534100 |
| rosa_wichuraiana | Rw2G042260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 296, 547 |
| Acc36I | ACCTGC | 1 cut(s) | 3270 |
| AccB1I | GGYRCC | 1 cut(s) | 218 |
| AccBSI | CCGCTC | 1 cut(s) | 328 |
| AccI | GTMKAC | 1 cut(s) | 300 |
| AccII | CGCG | 2 cut(s) | 90, 485 |
| AccIII | TCCGGA | 1 cut(s) | 1017 |
| AciI | CCGC | 6 cut(s) | 201, 246, 326, 483, 2649, 3545 |
| AclWI | GGATC | 5 cut(s) | 792, 888, 1190, 2536, 3766 |
| AcoI | YGGCCR | 1 cut(s) | 871 |
| AcuI | CTGAAG | 8 cut(s) | 2003, 2308, 2904, 3032, 3060, 3141, 3281, 3750 |
| AfaI | GTAC | 9 cut(s) | 805, 901, 1459, 1582, 1965, 2533, 2620, 2668, 2973 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 215, 1618, 1907, 2064, 2091 |
| AflII | CTTAAG | 1 cut(s) | 2980 |
| AflIII | ACRYGT | 2 cut(s) | 1671, 3740 |
| AhlI | ACTAGT | 1 cut(s) | 3244 |
| AjiI | CACGTC | 1 cut(s) | 3592 |
| AjnI | CCWGG | 6 cut(s) | 358, 1349, 2084, 2192, 2517, 3912 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 378, 410, 2241, 2273 |
| Alw21I | GWGCWC | 1 cut(s) | 3134 |
| AlwI | GGATC | 5 cut(s) | 792, 888, 1190, 2536, 3766 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 806, 1646, 1751 |
| Ama87I | CYCGRG | 1 cut(s) | 425 |
| Aor13HI | TCCGGA | 1 cut(s) | 1017 |
| AoxI | GGCC | 7 cut(s) | 3, 45, 871, 2066, 2327, 3456, 3510 |
| ApeKI | GCWGC | 7 cut(s) | 443, 2896, 3607, 3682, 3806, 3851, 3854 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2089, 2121 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3458 |
| AspA2I | CCTAGG | 1 cut(s) | 2503 |
| AspLEI | GCGC | 1 cut(s) | 90 |
| AspS9I | GGNCC | 6 cut(s) | 398, 1218, 1556, 2066, 2360, 3401 |
| AsuC2I | CCSGG | 4 cut(s) | 85, 137, 426, 427 |
| AsuHPI | GGTGA | 7 cut(s) | 106, 1007, 1124, 1550, 2663, 2942, 3113 |
| AsuII | TTCGAA | 1 cut(s) | 689 |
| AvaI | CYCGRG | 1 cut(s) | 425 |
| AvaII | GGWCC | 5 cut(s) | 398, 1218, 1556, 2360, 3401 |
| AvrII | CCTAGG | 1 cut(s) | 2503 |
| AxyI | CCTNAGG | 1 cut(s) | 2138 |
| BalI | TGGCCA | 1 cut(s) | 873 |
| BanI | GGYRCC | 1 cut(s) | 218 |
| BanII | GRGCYC | 1 cut(s) | 2027 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 829, 861, 1168, 1200 |
| BbsI | GAAGAC | 2 cut(s) | 581, 745 |
| Bbv12I | GWGCWC | 1 cut(s) | 3134 |
| BbvCI | CCTCAGC | 2 cut(s) | 3507, 3597 |
| BbvI | GCAGC | 7 cut(s) | 455, 2883, 3619, 3694, 3818, 3838, 3866 |
| BccI | CCATC | 8 cut(s) | 835, 884, 1391, 2020, 2077, 2338, 2516, 3667 |
| BceAI | ACGGC | 1 cut(s) | 206 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2752, 2786, 3596, 3630 |
| BciT130I | CCWGG | 6 cut(s) | 360, 1351, 2086, 2194, 2519, 3914 |
| BciVI | GTATCC | 1 cut(s) | 1335 |
| BclI | TGATCA | 2 cut(s) | 3253, 3667 |
| BcnI | CCSGG | 4 cut(s) | 85, 137, 426, 427 |
| BcuI | ACTAGT | 1 cut(s) | 3244 |
| BfmI | CTRYAG | 8 cut(s) | 441, 1638, 2164, 2988, 3277, 3680, 3804, 3852 |
| BfrI | CTTAAG | 1 cut(s) | 2980 |
| BfuAI | ACCTGC | 1 cut(s) | 3270 |
| BfuI | GTATCC | 1 cut(s) | 1335 |
| BglII | AGATCT | 2 cut(s) | 532, 1483 |
| BisI | GCNGC | 8 cut(s) | 247, 444, 2897, 3608, 3683, 3807, 3852, 3855 |
| BlnI | CCTAGG | 1 cut(s) | 2503 |
| BlsI | GCNGC | 8 cut(s) | 248, 445, 2898, 3609, 3684, 3808, 3853, 3856 |
| BmcAI | AGTACT | 2 cut(s) | 901, 1459 |
| Bme18I | GGWCC | 5 cut(s) | 398, 1218, 1556, 2360, 3401 |
| BmeT110I | CYCGRG | 1 cut(s) | 425 |
| BmgBI | CACGTC | 1 cut(s) | 3592 |
| BmgT120I | GGNCC | 6 cut(s) | 398, 1218, 1556, 2066, 2360, 3401 |
| BmiI | GGNNCC | 7 cut(s) | 220, 1219, 1557, 1728, 2361, 3114, 3402 |
| BmrI | ACTGGG | 3 cut(s) | 172, 588, 1969 |
| BmsI | GCATC | 9 cut(s) | 39, 956, 1670, 1780, 2458, 2808, 2865, 3463, 3493 |
| BmuI | ACTGGG | 3 cut(s) | 172, 588, 1969 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1249 |
| BpiI | GAAGAC | 2 cut(s) | 581, 745 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 101, 133, 519, 551 |
| BpmI | CTGGAG | 4 cut(s) | 1565, 1978, 2501, 2579 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3507, 3597 |
| Bpu14I | TTCGAA | 1 cut(s) | 689 |
| BpuEI | CTTGAG | 2 cut(s) | 521, 2134 |
| BpuMI | CCSGG | 4 cut(s) | 85, 137, 426, 427 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1323, 2424 |
| BsaI | GGTCTC | 2 cut(s) | 32, 316 |
| BsaJI | CCNNGG | 9 cut(s) | 42, 425, 651, 1167, 2058, 2084, 2126, 2503, 3912 |
| BsaWI | WCCGGW | 1 cut(s) | 1017 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 134, 164, 1282, 1312, 3287, 3317 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 215, 1618, 1907, 2064, 2091 |
| Bse1I | ACTGG | 6 cut(s) | 178, 594, 1975, 2596, 3028, 3394 |
| Bse21I | CCTNAGG | 1 cut(s) | 2138 |
| Bse3DI | GCAATG | 1 cut(s) | 491 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1323, 2424 |
| BseAI | TCCGGA | 1 cut(s) | 1017 |
| BseBI | CCWGG | 6 cut(s) | 360, 1351, 2086, 2194, 2519, 3914 |
| BseDI | CCNNGG | 9 cut(s) | 42, 425, 651, 1167, 2058, 2084, 2126, 2503, 3912 |
| BseJI | GATNNNNATC | 2 cut(s) | 1323, 2424 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 215, 1618, 1907, 2064, 2091 |
| BseMI | GCAATG | 1 cut(s) | 491 |
| BseNI | ACTGG | 6 cut(s) | 178, 594, 1975, 2596, 3028, 3394 |
| BseRI | GAGGAG | 2 cut(s) | 543, 633 |
| BseXI | GCAGC | 7 cut(s) | 455, 2883, 3619, 3694, 3818, 3838, 3866 |
| BseYI | CCCAGC | 3 cut(s) | 943, 1767, 2864 |
| BsgI | GTGCAG | 2 cut(s) | 1932, 3626 |
| Bsh1236I | CGCG | 2 cut(s) | 90, 485 |
| BshFI | GGCC | 7 cut(s) | 5, 47, 873, 2068, 2329, 3458, 3512 |
| BshNI | GGYRCC | 1 cut(s) | 218 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3134 |
| BsiHKCI | CYCGRG | 1 cut(s) | 425 |
| BsiSI | CCGG | 5 cut(s) | 85, 136, 209, 426, 1018 |
| BslFI | GGGAC | 8 cut(s) | 152, 1303, 1569, 2118, 2145, 2250, 2373, 2445 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 215, 1618, 1907, 2064, 2091 |
| BsmFI | GGGAC | 8 cut(s) | 152, 1303, 1569, 2118, 2145, 2250, 2373, 2445 |
| BsmI | GAATGC | 1 cut(s) | 1917 |
| BsnI | GGCC | 7 cut(s) | 5, 47, 873, 2068, 2329, 3458, 3512 |
| Bso31I | GGTCTC | 2 cut(s) | 32, 316 |
| BsoBI | CYCGRG | 1 cut(s) | 425 |
| Bsp119I | TTCGAA | 1 cut(s) | 689 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2027, 3134 |
| Bsp13I | TCCGGA | 1 cut(s) | 1017 |
| Bsp1407I | TGTACA | 1 cut(s) | 2531 |
| Bsp19I | CCATGG | 1 cut(s) | 2058 |
| BspACI | CCGC | 6 cut(s) | 201, 246, 326, 483, 2649, 3545 |
| BspANI | GGCC | 7 cut(s) | 5, 47, 873, 2068, 2329, 3458, 3512 |
| BspEI | TCCGGA | 1 cut(s) | 1017 |
| BspFNI | CGCG | 2 cut(s) | 90, 485 |
| BspHI | TCATGA | 3 cut(s) | 460, 3250, 3450 |
| BspLI | GGNNCC | 7 cut(s) | 220, 1219, 1557, 1728, 2361, 3114, 3402 |
| BspMAI | CTGCAG | 7 cut(s) | 445, 2168, 2992, 3281, 3684, 3808, 3856 |
| BspMI | ACCTGC | 1 cut(s) | 3270 |
| BspPI | GGATC | 5 cut(s) | 792, 888, 1190, 2536, 3766 |
| BspQI | GCTCTTC | 1 cut(s) | 2139 |
| BspT104I | TTCGAA | 1 cut(s) | 689 |
| BspT107I | GGYRCC | 1 cut(s) | 218 |
| BspTI | CTTAAG | 1 cut(s) | 2980 |
| BspTNI | GGTCTC | 2 cut(s) | 32, 316 |
| BsrBI | CCGCTC | 1 cut(s) | 328 |
| BsrDI | GCAATG | 1 cut(s) | 491 |
| BsrGI | TGTACA | 1 cut(s) | 2531 |
| BsrI | ACTGG | 6 cut(s) | 178, 594, 1975, 2596, 3028, 3394 |
| BssECI | CCNNGG | 9 cut(s) | 42, 425, 651, 1167, 2058, 2084, 2126, 2503, 3912 |
| BssT1I | CCWWGG | 3 cut(s) | 1167, 2058, 2503 |
| Bst2UI | CCWGG | 6 cut(s) | 360, 1351, 2086, 2194, 2519, 3914 |
| Bst6I | CTCTTC | 5 cut(s) | 564, 705, 1845, 2139, 3743 |
| BstAFI | CTTAAG | 1 cut(s) | 2980 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2938 |
| BstAUI | TGTACA | 1 cut(s) | 2531 |
| BstBI | TTCGAA | 1 cut(s) | 689 |
| BstC8I | GCNNGC | 3 cut(s) | 792, 1915, 3612 |
| BstDSI | CCRYGG | 1 cut(s) | 2058 |
| BstEII | GGTNACC | 1 cut(s) | 1112 |
| BstFNI | CGCG | 2 cut(s) | 90, 485 |
| BstHHI | GCGC | 1 cut(s) | 90 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 87, 252, 334, 918, 1148, 2236, 2938, 3482, 3679 |
| BstNI | CCWGG | 6 cut(s) | 360, 1351, 2086, 2194, 2519, 3914 |
| BstNSI | RCATGY | 4 cut(s) | 794, 1103, 1675, 3744 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1249 |
| BstPI | GGTNACC | 1 cut(s) | 1112 |
| BstSFI | CTRYAG | 8 cut(s) | 441, 1638, 2164, 2988, 3277, 3680, 3804, 3852 |
| BstUI | CGCG | 2 cut(s) | 90, 485 |
| BstV1I | GCAGC | 7 cut(s) | 455, 2883, 3619, 3694, 3818, 3838, 3866 |
| BstV2I | GAAGAC | 2 cut(s) | 581, 745 |
| BstX2I | RGATCY | 6 cut(s) | 532, 784, 880, 1483, 2541, 3771 |
| BstYI | RGATCY | 6 cut(s) | 532, 784, 880, 1483, 2541, 3771 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2138 |
| BsuI | GTATCC | 1 cut(s) | 1335 |
| BsuRI | GGCC | 7 cut(s) | 5, 47, 873, 2068, 2329, 3458, 3512 |
| BtgI | CCRYGG | 1 cut(s) | 2058 |
| BtrI | CACGTC | 1 cut(s) | 3592 |
| BtsI | GCAGTG | 3 cut(s) | 685, 1644, 3864 |
| BtsIMutI | CAGTG | 9 cut(s) | 685, 921, 936, 1644, 2635, 2866, 3035, 3722, 3864 |
| BveI | ACCTGC | 1 cut(s) | 3270 |
| Cac8I | GCNNGC | 3 cut(s) | 792, 1915, 3612 |
| CaiI | CAGNNNCTG | 3 cut(s) | 806, 1646, 1751 |
| CciI | TCATGA | 3 cut(s) | 460, 3250, 3450 |
| CfoI | GCGC | 1 cut(s) | 90 |
| Cfr13I | GGNCC | 6 cut(s) | 398, 1218, 1556, 2066, 2360, 3401 |
| Cfr9I | CCCGGG | 1 cut(s) | 425 |
| Csp6I | GTAC | 9 cut(s) | 804, 900, 1458, 1581, 1964, 2532, 2619, 2667, 2972 |
| CviQI | GTAC | 9 cut(s) | 804, 900, 1458, 1581, 1964, 2532, 2619, 2667, 2972 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 296, 547 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 296, 547 |
| EaeI | YGGCCR | 1 cut(s) | 871 |
| Eam1104I | CTCTTC | 5 cut(s) | 564, 705, 1845, 2139, 3743 |
| EarI | CTCTTC | 5 cut(s) | 564, 705, 1845, 2139, 3743 |
| EciI | GGCGGA | 2 cut(s) | 190, 3560 |
| Eco130I | CCWWGG | 3 cut(s) | 1167, 2058, 2503 |
| Eco147I | AGGCCT | 1 cut(s) | 3458 |
| Eco24I | GRGCYC | 1 cut(s) | 2027 |
| Eco31I | GGTCTC | 2 cut(s) | 32, 316 |
| Eco32I | GATATC | 1 cut(s) | 2782 |
| Eco47I | GGWCC | 5 cut(s) | 398, 1218, 1556, 2360, 3401 |
| Eco57I | CTGAAG | 8 cut(s) | 2003, 2308, 2904, 3032, 3060, 3141, 3281, 3750 |
| Eco81I | CCTNAGG | 1 cut(s) | 2138 |
| Eco88I | CYCGRG | 1 cut(s) | 425 |
| Eco91I | GGTNACC | 1 cut(s) | 1112 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2360 |
| EcoO65I | GGTNACC | 1 cut(s) | 1112 |
| EcoRI | GAATTC | 1 cut(s) | 1359 |
| EcoRII | CCWGG | 6 cut(s) | 358, 1349, 2084, 2192, 2517, 3912 |
| EcoRV | GATATC | 1 cut(s) | 2782 |
| EcoT14I | CCWWGG | 3 cut(s) | 1167, 2058, 2503 |
| EcoT22I | ATGCAT | 1 cut(s) | 2943 |
| EcoT38I | GRGCYC | 1 cut(s) | 2027 |
| ErhI | CCWWGG | 3 cut(s) | 1167, 2058, 2503 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1842, 1874, 3005, 3037, 3804, 3836 |
| FaqI | GGGAC | 8 cut(s) | 152, 1303, 1569, 2118, 2145, 2250, 2373, 2445 |
| FauNDI | CATATG | 1 cut(s) | 1987 |
| FbaI | TGATCA | 2 cut(s) | 3253, 3667 |
| FblI | GTMKAC | 1 cut(s) | 300 |
| Fnu4HI | GCNGC | 8 cut(s) | 247, 444, 2897, 3608, 3683, 3807, 3852, 3855 |
| FriOI | GRGCYC | 1 cut(s) | 2027 |
| Fsp4HI | GCNGC | 8 cut(s) | 247, 444, 2897, 3608, 3683, 3807, 3852, 3855 |
| GlaI | GCGC | 1 cut(s) | 89 |
| GluI | GCNGC | 8 cut(s) | 247, 444, 2897, 3608, 3683, 3807, 3852, 3855 |
| GsaI | CCCAGC | 3 cut(s) | 947, 1771, 2868 |
| GsuI | CTGGAG | 4 cut(s) | 1565, 1978, 2501, 2579 |
| HaeIII | GGCC | 7 cut(s) | 5, 47, 873, 2068, 2329, 3458, 3512 |
| HapII | CCGG | 5 cut(s) | 85, 136, 209, 426, 1018 |
| HhaI | GCGC | 1 cut(s) | 90 |
| Hin6I | GCGC | 1 cut(s) | 88 |
| HinP1I | GCGC | 1 cut(s) | 88 |
| HincII | GTYRAC | 4 cut(s) | 301, 1573, 1606, 2851 |
| HindII | GTYRAC | 4 cut(s) | 301, 1573, 1606, 2851 |
| HindIII | AAGCTT | 3 cut(s) | 2201, 2252, 3646 |
| HpaI | GTTAAC | 2 cut(s) | 1573, 1606 |
| HpaII | CCGG | 5 cut(s) | 85, 136, 209, 426, 1018 |
| HphI | GGTGA | 7 cut(s) | 106, 1007, 1124, 1550, 2663, 2942, 3113 |
| Hpy99I | CGWCG | 7 cut(s) | 23, 146, 260, 284, 293, 296, 305 |
| HpyCH4IV | ACGT | 6 cut(s) | 548, 1492, 2488, 3289, 3591, 3871 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 87, 252, 334, 918, 1148, 2236, 2938, 3482, 3679 |
| HpySE526I | ACGT | 6 cut(s) | 548, 1492, 2488, 3289, 3591, 3871 |
| HspAI | GCGC | 1 cut(s) | 88 |
| Kpn2I | TCCGGA | 1 cut(s) | 1017 |
| Ksp22I | TGATCA | 2 cut(s) | 3253, 3667 |
| KspAI | GTTAAC | 2 cut(s) | 1573, 1606 |
| LguI | GCTCTTC | 1 cut(s) | 2139 |
| LmnI | GCTCC | 5 cut(s) | 86, 166, 1453, 1732, 3118 |
| Lsp1109I | GCAGC | 7 cut(s) | 455, 2883, 3619, 3694, 3818, 3838, 3866 |
| LweI | GCATC | 9 cut(s) | 39, 956, 1670, 1780, 2458, 2808, 2865, 3463, 3493 |
| MaeII | ACGT | 6 cut(s) | 548, 1492, 2488, 3289, 3591, 3871 |
| MbiI | CCGCTC | 1 cut(s) | 328 |
| MfeI | CAATTG | 3 cut(s) | 978, 1254, 1931 |
| MflI | RGATCY | 6 cut(s) | 532, 784, 880, 1483, 2541, 3771 |
| MhlI | GDGCHC | 2 cut(s) | 2027, 3134 |
| MlsI | TGGCCA | 1 cut(s) | 873 |
| MluNI | TGGCCA | 1 cut(s) | 873 |
| MmeI | TCCRAC | 5 cut(s) | 177, 399, 834, 855, 3428 |
| Mox20I | TGGCCA | 1 cut(s) | 873 |
| Mph1103I | ATGCAT | 1 cut(s) | 2943 |
| MroI | TCCGGA | 1 cut(s) | 1017 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3458 |
| MscI | TGGCCA | 1 cut(s) | 873 |
| MslI | CAYNNNNRTG | 6 cut(s) | 726, 1226, 2412, 2577, 3099, 3574 |
| Msp20I | TGGCCA | 1 cut(s) | 873 |
| MspA1I | CMGCKG | 2 cut(s) | 1741, 3610 |
| MspCI | CTTAAG | 1 cut(s) | 2980 |
| MspI | CCGG | 5 cut(s) | 85, 136, 209, 426, 1018 |
| MunI | CAATTG | 3 cut(s) | 978, 1254, 1931 |
| Mva1269I | GAATGC | 1 cut(s) | 1917 |
| MvaI | CCWGG | 6 cut(s) | 360, 1351, 2086, 2194, 2519, 3914 |
| MvnI | CGCG | 2 cut(s) | 90, 485 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 87, 252, 334, 918, 1148, 2236, 2938, 3482, 3679 |
| NciI | CCSGG | 4 cut(s) | 85, 137, 426, 427 |
| NcoI | CCATGG | 1 cut(s) | 2058 |
| NdeI | CATATG | 1 cut(s) | 1987 |
| NlaIV | GGNNCC | 7 cut(s) | 220, 1219, 1557, 1728, 2361, 3114, 3402 |
| NmeAIII | GCCGAG | 2 cut(s) | 73, 229 |
| NmuCI | GTSAC | 6 cut(s) | 995, 1112, 1430, 1493, 2630, 3718 |
| NsiI | ATGCAT | 1 cut(s) | 2943 |
| NspI | RCATGY | 4 cut(s) | 794, 1103, 1675, 3744 |
| NspV | TTCGAA | 1 cut(s) | 689 |
| PaeI | GCATGC | 1 cut(s) | 794 |
| PagI | TCATGA | 3 cut(s) | 460, 3250, 3450 |
| PceI | AGGCCT | 1 cut(s) | 3458 |
| PciI | ACATGT | 2 cut(s) | 1671, 3740 |
| PciSI | GCTCTTC | 1 cut(s) | 2139 |
| PcsI | WCGNNNNNNNCGW | 7 cut(s) | 105, 150, 201, 285, 288, 297, 341 |
| PctI | GAATGC | 1 cut(s) | 1917 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3458 |
| PflFI | GACNNNGTC | 1 cut(s) | 296 |
| PfoI | TCCNGGA | 2 cut(s) | 2192, 2517 |
| PkrI | GCNGC | 8 cut(s) | 248, 445, 2898, 3609, 3684, 3808, 3853, 3856 |
| PpuMI | RGGWCCY | 1 cut(s) | 2360 |
| PscI | ACATGT | 2 cut(s) | 1671, 3740 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1249 |
| Psp5II | RGGWCCY | 1 cut(s) | 2360 |
| Psp6I | CCWGG | 6 cut(s) | 358, 1349, 2084, 2192, 2517, 3912 |
| PspEI | GGTNACC | 1 cut(s) | 1112 |
| PspFI | CCCAGC | 3 cut(s) | 943, 1767, 2864 |
| PspGI | CCWGG | 6 cut(s) | 358, 1349, 2084, 2192, 2517, 3912 |
| PspN4I | GGNNCC | 7 cut(s) | 220, 1219, 1557, 1728, 2361, 3114, 3402 |
| PspPI | GGNCC | 6 cut(s) | 398, 1218, 1556, 2066, 2360, 3401 |
| PspPPI | RGGWCCY | 1 cut(s) | 2360 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1072, 1104 |
| PstI | CTGCAG | 7 cut(s) | 445, 2168, 2992, 3281, 3684, 3808, 3856 |
| PstNI | CAGNNNCTG | 3 cut(s) | 806, 1646, 1751 |
| PsuI | RGATCY | 6 cut(s) | 532, 784, 880, 1483, 2541, 3771 |
| PsyI | GACNNNGTC | 1 cut(s) | 296 |
| PvuII | CAGCTG | 2 cut(s) | 1741, 3610 |
| RsaI | GTAC | 9 cut(s) | 805, 901, 1459, 1582, 1965, 2533, 2620, 2668, 2973 |
| RsaNI | GTAC | 9 cut(s) | 804, 900, 1458, 1581, 1964, 2532, 2619, 2667, 2972 |
| RseI | CAYNNNNRTG | 6 cut(s) | 726, 1226, 2412, 2577, 3099, 3574 |
| SalI | GTCGAC | 1 cut(s) | 299 |
| SapI | GCTCTTC | 1 cut(s) | 2139 |
| SatI | GCNGC | 8 cut(s) | 247, 444, 2897, 3608, 3683, 3807, 3852, 3855 |
| Sau96I | GGNCC | 6 cut(s) | 398, 1218, 1556, 2066, 2360, 3401 |
| SbfI | CCTGCAGG | 1 cut(s) | 2168 |
| ScaI | AGTACT | 2 cut(s) | 901, 1459 |
| SdaI | CCTGCAGG | 1 cut(s) | 2168 |
| SduI | GDGCHC | 2 cut(s) | 2027, 3134 |
| SfaNI | GCATC | 9 cut(s) | 39, 956, 1670, 1780, 2458, 2808, 2865, 3463, 3493 |
| SfcI | CTRYAG | 8 cut(s) | 441, 1638, 2164, 2988, 3277, 3680, 3804, 3852 |
| SfuI | TTCGAA | 1 cut(s) | 689 |
| SinI | GGWCC | 5 cut(s) | 398, 1218, 1556, 2360, 3401 |
| SmaI | CCCGGG | 1 cut(s) | 427 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 726, 1226, 2412, 2577, 3099, 3574 |
| SmlI | CTYRAG | 3 cut(s) | 536, 2113, 2980 |
| SmoI | CTYRAG | 3 cut(s) | 536, 2113, 2980 |
| SpeI | ACTAGT | 1 cut(s) | 3244 |
| SphI | GCATGC | 1 cut(s) | 794 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2168 |
| SseBI | AGGCCT | 1 cut(s) | 3458 |
| SsiI | CCGC | 6 cut(s) | 201, 246, 326, 483, 2649, 3545 |
| SspI | AATATT | 1 cut(s) | 1192 |
| StuI | AGGCCT | 1 cut(s) | 3458 |
| StyI | CCWWGG | 3 cut(s) | 1167, 2058, 2503 |
| TaiI | ACGT | 6 cut(s) | 551, 1495, 2491, 3292, 3594, 3874 |
| TaqI | TCGA | 3 cut(s) | 300, 689, 3616 |
| TaqII | GACCGA | 3 cut(s) | 56, 1573, 3066 |
| TatI | WGTACW | 5 cut(s) | 899, 1457, 1963, 2531, 2618 |
| TauI | GCSGC | 1 cut(s) | 249 |
| TscAI | CASTG | 9 cut(s) | 685, 928, 943, 1651, 2635, 2866, 3035, 3729, 3864 |
| TseFI | GTSAC | 6 cut(s) | 995, 1112, 1430, 1493, 2630, 3718 |
| TseI | GCWGC | 7 cut(s) | 443, 2896, 3607, 3682, 3806, 3851, 3854 |
| Tsp45I | GTSAC | 6 cut(s) | 995, 1112, 1430, 1493, 2630, 3718 |
| TspGWI | ACGGA | 3 cut(s) | 109, 309, 1601 |
| TspMI | CCCGGG | 1 cut(s) | 425 |
| TspRI | CASTG | 9 cut(s) | 685, 928, 943, 1651, 2635, 2866, 3035, 3729, 3864 |
| Tth111I | GACNNNGTC | 1 cut(s) | 296 |
| Vha464I | CTTAAG | 1 cut(s) | 2980 |
| VpaK11BI | GGWCC | 5 cut(s) | 398, 1218, 1556, 2360, 3401 |
| XbaI | TCTAGA | 1 cut(s) | 1153 |
| XceI | RCATGY | 4 cut(s) | 794, 1103, 1675, 3744 |
| XmaI | CCCGGG | 1 cut(s) | 425 |
| XmaJI | CCTAGG | 1 cut(s) | 2503 |
| XmiI | GTMKAC | 1 cut(s) | 300 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3458 |
| ZrmI | AGTACT | 2 cut(s) | 901, 1459 |
| Zsp2I | ATGCAT | 1 cut(s) | 2943 |