Rroxscaffold_2G00093640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005008
Physical Location & Seq
Reverse (-)
14960631 .. 14977327
16697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093640.1

Sequence Viewer

Length: 5085 bp
ATGGCCTCCAAGACCCCCGACGAGCCTTGCATCTCCGAGACCGAGGCCGAGACAATAGCCATGAGAATCAAGAGGAAACGCTCCCGGCGCGTGAGCTTCGCCGACACCGAGATCACCTCCGTCCACATATTCAACCGCGACGACGAGGACTCCGACAATGCTCCCGACTCCGAACCCCAGTCCAGCTCTCTAAACGACTCCGCCGAGCCGGATAATGGTGCAGTAGGGTTTTTCAAGGATGTCGGCGGCGAAAGCGACGATTTCAAGGATTCCGATGACGACGAGGACGACGACGGAGTCGATGGGAGGAAGTCGTTTTTGAGACCGCTCGGTTCGCCTTCTCCGATGAGTAGCGTTCCTGGCTCTGCTACCTCCAACAACGAAGAAGATTTCTTTGGTCCTGTATCAGCAGATTTCATTAGACCCGGACTATCTGATTCTGCAGCCTCAGATAGCTTTCATGAAACTACAATGGACACTACCGCATTTTCATTGCATTATCGTAGTCTTGCAAGGTCAGACTTTGGAGGAGATCTCAAGACCCCAACGTCTTTTCGCCTTGCCTTTGAAGAGAAGACACCAACCCCTAACCCCAGTGATTCAGGAAGTCTTATGTCTCTAACGAAACCAAAGAATCTAACTCCTCAGTCTTCGGTTCCTGTTGATAAGGTCAGAGGCGGTGAAGATTCGAATGACATGAGTATTATAGAAGAGAACCCACATAGGTATGATTATGGAAGACTATCTCCTAAATTAGATGCACTTTTGGCAGAAGGTAGCAAGGATCTGCATGCTGACTCAGTTACTGCCTCTATTAGCATAATGCCATCCAAGAGAAGTGAGGTTACTGTGTTGGAAAAAAATGGAATTGGCCACATGGATCTAAGAGATGGTAGAAGTACTGAAGTGGGCAATTTTGGCACTCATGAGATGTCCACTGACCCAGCATCTAATTCTCGTATCAAGTTGAGTGAGGCAAATGGTCTGGTTGCTGGTGACTCCACTGGCGACCAAATCCAGACTCCAAATCAGTTAATGAAGGTCAGTAACGAACTCACTAAAGATAAATTTCAAAAGGGTATGGAGAGTTTAGAGTTACCTGCTGCGAATGGCGACCTCGTAGCAAATGTCAATAGTAAAGCAACTAAAGCTCTAGAAAATTCTCCCAAGGACAGAAGAGATAATACTAATATTGATCCTCATTGTGATAAGGAGGGGTCCATATTCATGTTATCTGCTAGAGGACAGCAGTCAATTATGAATACTCCTAATTTAGCAAGACATTCAGGGACAGTAACTCCTTCCTCAAAACATAAAGATTGGTATCCAGCAATTCAGAAAAGCATTTCCAGGTTAAGAATTCCAGAGCCTTCTCCCCGTGCTTCTAGTCTCAAAGATGGAATTGAGAAATTAAGATGTAGATTGTCAAGTCACTCATCCCCAAATGCTCCTTTAAGTACTGTTATGGCTGACATTAGCAAAAATCTACAACGTGACTTCAACAAATCTCCTACTGCTTTTTTGGAGAAGCAAGTAGGTGATCTGGAGAAGGGGGGACAAAAGAGTTTGGTTAACAAAGGTACAGATGACAATGAGAACCCAGTTAACATCCGTAAGTTGGGAAAGGATGAAAACTCTACAAACACTGCAAAAGATGAAGCATCTCTGAACATGTTTGCAGACACTCTTTTGAAGGATATATTTGACAGACCAATAGAAGAAGTGGCTCCACCCTCTCAGCTGTCAGTATCTGGAAGTAAAATGACCCAGCATCTCTTGATGTCAGAAAATAACACAAAAGGAACAATGGTTTCTTCTGGAACTGATTGCCTATTGGCAGATGAGCGAGAAGAGAATCTTCCCCATGTGCAACTTCAATCAGAAAATAACTTCCAAACTCCTTTAAGTGGTGCAGGCATTCTGAACATTCAATTGCAAAGTCCAGATAAAAGATTTCAACCTGGACTAGAACCCCAGTCTAAACCATATGTCTCCAGAAGTATGACTGAACCATCCCCTCAGAGCCCTCCTCCTAAAGACTCAGCTCTGAACAACTCCATGGAAGGGCCATCTAAGAGTCCACCCAGGAAAAGGCAAACTCCAAGTCCTCCCTTGAGAAATACCCCTCGGAGTCCCCTCAGGGAAAAGCCAAGTCAGAGTCCCTGCAGGAAAGAAACAGCTAGGAGTCCTTCCAGGAAAAAGCTTACTGAGAGTCTTTCTCGGAAAGAGCCGATTCAGCCGTTCATAGAAGAGCTTATTGGTAGTCCCATTGAGAAAGAACTGAACCATAGTCTCTTTCTGAAAGAGCTAACACTAAGCCCCTTCAGGCCATCGTATGCAGAACACATAGATAATATGGGACCTGTTGGGAAAGACATGGTATCTTCTGAGTTAAATTCAAATAATCATCCTAATGATGATTGTTATCAGGGACTACATATTTCACAGAGTCCTCTTACCAAACAAGATGCAGATAATTCTTTTGGACGTAAAAGAAGAAACCTAGGCATAACTCTCCAGGATGGAGACTGTACAGATAAGATCCCCGACAGCCAGAGAAGTTCTAAAATTCATAGAAGTGAGAACTATGATCTCCAGTTCAAGTTGGGTCATGCAAGTACACTTCACAGTGACAGAGAGAAGTATGGCGGTGAATCGGGTGGTGATACAATTTGGGAGAGCTGGACTGATATTCTAGTCAAATTCTCAGGAGATTCAAAACAGTTGCTTTCTCCATTGACAAGCAACCTAAATTTAAAAGCGATTGGGGTGCTGGAAGATATCTTGATACATCTATTGAAGGCTAAAAAGTATGAGACGCTTTGTGCTGAAATCGAATCTCAGAAGGTCAGCTGCATCAGTGCTCGGCATAAAAGGGTAGCTGAAGCAAGGTTGCTGCTTTATAGATTAGCGAATGAAAAGGCAAAGTTGCAGTTAATGCATTTGAAGCACCAGAAATTACAGAGTAGGGTACAGCTCTTAAGCTCTGCAGTTCAGGAGTCTCAAATGCTGAAGTTGAATTTCATCCAGTGTCAGTCTGAAGCTGGTAAAGAAGAGACTCTTGTTGATGAGAGTCGGTCATGTTTAGTTAATCATGTGGGTGAACAAGAGGCTCCCTGTGATAATGTGAGCACAATGAGACAAGAGCTAAGAGCTTCAGATGAGAAAATAAAAAGTTTAAGCAAATTCTTTCACTCTCATATCAAGTTCAAAGGAGAACCAAGTTATGCCAACACTATTGCACTAGTTCATGATCATCTGAAGACAAGAACATTCTGCAGGTTAATACGTCAGGAGTTACAGTCATGGGATGTTGATGAATTTGAGATTAAGAATGGTCATTACAACATTCTTCTCAGCTATCATGGTTACATCATTCAAAGGTTTACTGGTAATATGGGTCCAACATCACGCATAGTCATCTCAAAAAAGTTGAATAATGTAAAGATCATGAAGGCCTTCCCGAACATAGATGCCCTAGTTGCATTTGATTTTGTGCTAGATGCTGAGGCCACCAAAGAAATGTTTGATTCAAGATGTTTGGCGGAAGAAACACAAGTTACCCGTTCACAGCTATGTAATCTGCTAGGCGTGGCTGAGGAAGTGCAGCTGGCTCGATTTGAGATTGTAAATTTGATCCAGACAAGCTTTCATACTCCATCCGATGATCAGCTTGATCTGCAGCTTTGTTTCCTTAATTGCAAGAGCAGTAGAAAGGTCACACTGTCTCTCGATATGACATGTTTGAAGAGGGGGTTTTATCCTTCAGAGATCCTTCCATATCAGATACAGGCTTTTGAATCTGCAGCACAAGTGTTGCTTCCACAGTCGCTCTTAACTGAAATAAGAGCTGCAGCAGAGGGTCTTGAACCTGGATCCACAAGAATAATGAGGCTCTGTAAATGTATTTCCCAGGTGATTCTGTTGCCGGAGCTACGAACTAATAATTTCATCATGGTGCGCCTGATGCAAGATCTAGGGAATTTGCTATTCCCCCCTTTGTTGCTTGAAGGGGACACGTGGCATGCTGTGAGAAAGTTCAAAGCTTTTCTGGGTGCTGTAATAGAATTTCTTGGGTTTTTCTCTGTGTGTTGGTCTGATGATGCTCTTATGCTAGATATGGTTGTAGTGAGAAATACTCAGCAGAATTGTGGTCTGTCTGAGAAGCTACCTTCGGTTAGATTCATATACAGATTTCCTGGAGGAAATGGGGTTGATGAGCATTGCCGAGAACAGCACTGGAAGTGCTTGGAGCCCCCAGAAAATAACACCAGAGGGAATGCATCTGATAAATTTGAAGTCAGTGACGTGGGTGCCATGGATAAGTCTGATGGTTTAGTTGGTTCCTCTTCGGTTCCTGCACTTAACTCAGCCCCTCAGGTTGTTGGTCAGATGCCTGGATCTGCAAATTCTACATTGCCCAAGTTATACTGTCACGGAACGAAAAGCCCAGGGCTCTGTGAAGATGATGACCTTTATGACGATTTTGATATGGATGAAATGGATCTGAATCTTGAAAATTATGATGAACTATTTGGTGTATCTCTCAATCACTCTGAAGAGCTTTTCAAGAATGGTGGGATTGATAGTTTGTTTGGGGCAAAGAACATGACCAGGGCTCAGGAATTAATTGCTGCTGAGGGGTCATCAATTGGACGGGTAAATGCGTTGCAGCAGCCAGCATGCAGTACCGCAGCATCTGCGGATTCTGTAATGAGTACAAAAACTGAACCAATTGTTTCTTTTGTGCCAAAGCAAGCACAGTCAAACCTTTCATTTTCGGGTGTCACCGGAGAGAGTAGTGCTGGAGATTGTCAAGATTGCGGGGCTTCCTCAATGCTACTCATGGGAGAGCCTCCATGGTGTCCTCCAGGCCCTGAGAGTTCCTTCCAGTCTGCTAATCGAAGTAATGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCACGCAAGTTTGAGAAAAGAGTGAGGTATGCTTCTCGCAAAGCAAGGGCAGATGTAAGAAAGCGTGTGAAAGGGCGGTTTATTAAAGCTGGCGAAGCTTATGATTATGACCCTTTGAACCAGGCCAGAACCAGAAGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1694

Amino Acids

187.51

Weight (kDa)

5.81

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 1635 - 1677 3.2e-15 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 296, 547
Acc36I ACCTGC 2 cut(s) 1108, 3270
AccB1I GGYRCC 1 cut(s) 4313
AccBSI CCGCTC 1 cut(s) 328
AccII CGCG 2 cut(s) 90, 138
AcoI YGGCCR 1 cut(s) 871
AcuI CTGAAG 9 cut(s) 924, 2308, 2904, 3032, 3060, 3141, 3281, 3750, 4578
AcvI CACGTG 1 cut(s) 4020
AfaI GTAC 8 cut(s) 901, 1459, 1582, 2533, 2620, 2973, 4690, 4720
AfiI CCNNNNNNNGG 5 cut(s) 215, 1618, 1907, 2064, 2091
AflII CTTAAG 1 cut(s) 2980
AflIII ACRYGT 3 cut(s) 1671, 3740, 4017
AhlI ACTAGT 1 cut(s) 3244
AjiI CACGTC 1 cut(s) 4309
AjuI GAANNNNNNNTTGG 4 cut(s) 378, 410, 2241, 2273
Alw21I GWGCWC 2 cut(s) 2866, 3134
AlwNI CAGNNNCTG 4 cut(s) 806, 1751, 4700, 4877
AoxI GGCC 9 cut(s) 3, 45, 871, 2066, 2327, 3456, 3510, 4873, 5064
ArsI GACNNNNNNTTYG 2 cut(s) 2089, 2121
AseI ATTAAT 1 cut(s) 4628
Asp700I GAANNNNTTC 1 cut(s) 3458
AspA2I CCTAGG 1 cut(s) 2503
AspLEI GCGC 2 cut(s) 90, 3963
AspS9I GGNCC 6 cut(s) 398, 1218, 2066, 2360, 3401, 4874
AsuC2I CCSGG 2 cut(s) 85, 426
AsuHPI GGTGA 9 cut(s) 106, 692, 1007, 1550, 2663, 2675, 3113, 3928, 4780
AsuII TTCGAA 1 cut(s) 689
AvaII GGWCC 4 cut(s) 398, 1218, 2360, 3401
AvrII CCTAGG 1 cut(s) 2503
AxyI CCTNAGG 2 cut(s) 2138, 4377
BalI TGGCCA 1 cut(s) 873
BamHI GGATCC 1 cut(s) 3875
BanI GGYRCC 1 cut(s) 4313
BanII GRGCYC 4 cut(s) 2027, 4257, 4458, 4621
BarI GAAGNNNNNNTAC 4 cut(s) 829, 861, 1168, 1200
BbrPI CACGTG 1 cut(s) 4020
BbsI GAAGAC 4 cut(s) 581, 642, 745, 3269
Bbv12I GWGCWC 2 cut(s) 2866, 3134
BbvCI CCTCAGC 3 cut(s) 3507, 3597, 4638
BceAI ACGGC 1 cut(s) 2224
BcgI CGANNNNNNTGC 4 cut(s) 2752, 2786, 3596, 3630
BciVI GTATCC 1 cut(s) 1335
BclI TGATCA 2 cut(s) 3253, 3667
BcnI CCSGG 2 cut(s) 85, 426
BcuI ACTAGT 1 cut(s) 3244
BfmI CTRYAG 7 cut(s) 441, 2164, 2988, 3277, 3680, 3804, 3852
BfrI CTTAAG 1 cut(s) 2980
BfuAI ACCTGC 2 cut(s) 1108, 3270
BfuI GTATCC 1 cut(s) 1335
BglII AGATCT 2 cut(s) 532, 3973
BlnI CCTAGG 1 cut(s) 2503
BmcAI AGTACT 2 cut(s) 901, 1459
Bme18I GGWCC 4 cut(s) 398, 1218, 2360, 3401
BmgBI CACGTC 1 cut(s) 4309
BmgT120I GGNCC 6 cut(s) 398, 1218, 2066, 2360, 3401, 4874
BmrI ACTGGG 4 cut(s) 172, 588, 1595, 1969
BmuI ACTGGG 4 cut(s) 172, 588, 1595, 1969
BoxI GACNNNNGTC 1 cut(s) 1249
BpiI GAAGAC 4 cut(s) 581, 642, 745, 3269
BpmI CTGGAG 7 cut(s) 1565, 1978, 2501, 2579, 4221, 4827, 4854
Bpu10I CCTNAGC 4 cut(s) 3507, 3597, 4620, 4638
Bpu14I TTCGAA 1 cut(s) 689
BpuEI CTTGAG 2 cut(s) 521, 2134
BpuMI CCSGG 2 cut(s) 85, 426
BsaAI YACGTR 1 cut(s) 4020
BsaBI GATNNNNATC 3 cut(s) 1323, 2424, 4509
BsaI GGTCTC 2 cut(s) 32, 316
BsaWI WCCGGW 1 cut(s) 4790
BsaXI ACNNNNNCTCC 6 cut(s) 134, 164, 1282, 1312, 3287, 3317
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 1618, 1907, 2064, 2091
Bse21I CCTNAGG 2 cut(s) 2138, 4377
Bse3DI GCAATG 3 cut(s) 491, 4222, 4415
Bse8I GATNNNNATC 3 cut(s) 1323, 2424, 4509
BseJI GATNNNNATC 3 cut(s) 1323, 2424, 4509
BseLI CCNNNNNNNGG 5 cut(s) 215, 1618, 1907, 2064, 2091
BseMI GCAATG 3 cut(s) 491, 4222, 4415
BseRI GAGGAG 3 cut(s) 543, 633, 2019
BseYI CCCAGC 2 cut(s) 943, 1767
BsgI GTGCAG 4 cut(s) 240, 1932, 3626, 4344
Bsh1236I CGCG 2 cut(s) 90, 138
BshFI GGCC 9 cut(s) 5, 47, 873, 2068, 2329, 3458, 3512, 4875, 5066
BshNI GGYRCC 1 cut(s) 4313
BsiHKAI GWGCWC 2 cut(s) 2866, 3134
BsiSI CCGG 5 cut(s) 85, 209, 426, 3929, 4791
BslFI GGGAC 8 cut(s) 1303, 1569, 2118, 2145, 2250, 2373, 2445, 4028
BslI CCNNNNNNNGG 5 cut(s) 215, 1618, 1907, 2064, 2091
BsmBI CGTCTC 1 cut(s) 2810
BsmFI GGGAC 8 cut(s) 1303, 1569, 2118, 2145, 2250, 2373, 2445, 4028
BsmI GAATGC 2 cut(s) 1917, 4285
BsnI GGCC 9 cut(s) 5, 47, 873, 2068, 2329, 3458, 3512, 4875, 5066
Bso31I GGTCTC 2 cut(s) 32, 316
Bsp119I TTCGAA 1 cut(s) 689
Bsp1286I GDGCHC 6 cut(s) 2027, 2866, 3134, 4257, 4458, 4621
Bsp1407I TGTACA 1 cut(s) 2531
Bsp19I CCATGG 3 cut(s) 2058, 4317, 4859
BspANI GGCC 9 cut(s) 5, 47, 873, 2068, 2329, 3458, 3512, 4875, 5066
BspFNI CGCG 2 cut(s) 90, 138
BspHI TCATGA 4 cut(s) 460, 925, 3250, 3450
BspMAI CTGCAG 7 cut(s) 445, 2168, 2992, 3281, 3684, 3808, 3856
BspMI ACCTGC 2 cut(s) 1108, 3270
BspQI GCTCTTC 2 cut(s) 2244, 4554
BspT104I TTCGAA 1 cut(s) 689
BspT107I GGYRCC 1 cut(s) 4313
BspTI CTTAAG 1 cut(s) 2980
BspTNI GGTCTC 2 cut(s) 32, 316
BsrBI CCGCTC 1 cut(s) 328
BsrDI GCAATG 3 cut(s) 491, 4222, 4415
BsrGI TGTACA 1 cut(s) 2531
BssT1I CCWWGG 5 cut(s) 1167, 2058, 2503, 4317, 4859
Bst6I CTCTTC 9 cut(s) 564, 705, 1171, 1845, 2244, 3048, 3743, 4354, 4554
BstAFI CTTAAG 1 cut(s) 2980
BstAPI GCANNNNNTGC 2 cut(s) 2938, 4700
BstAUI TGTACA 1 cut(s) 2531
BstBAI YACGTR 1 cut(s) 4020
BstBI TTCGAA 1 cut(s) 689
BstC8I GCNNGC 9 cut(s) 792, 1915, 3612, 4026, 4680, 4684, 4758, 4945, 5032
BstDSI CCRYGG 3 cut(s) 2058, 4317, 4859
BstFNI CGCG 2 cut(s) 90, 138
BstHHI GCGC 2 cut(s) 90, 3963
BstNSI RCATGY 5 cut(s) 794, 1675, 3744, 4028, 4686
BstPAI GACNNNNGTC 1 cut(s) 1249
BstSFI CTRYAG 7 cut(s) 441, 2164, 2988, 3277, 3680, 3804, 3852
BstUI CGCG 2 cut(s) 90, 138
BstV2I GAAGAC 4 cut(s) 581, 642, 745, 3269
BstX2I RGATCY 9 cut(s) 532, 784, 880, 2541, 3771, 3875, 3973, 4400, 4504
BstYI RGATCY 9 cut(s) 532, 784, 880, 2541, 3771, 3875, 3973, 4400, 4504
Bsu36I CCTNAGG 2 cut(s) 2138, 4377
BsuI GTATCC 1 cut(s) 1335
BsuRI GGCC 9 cut(s) 5, 47, 873, 2068, 2329, 3458, 3512, 4875, 5066
BtgI CCRYGG 3 cut(s) 2058, 4317, 4859
BtrI CACGTC 1 cut(s) 4309
BtsI GCAGTG 1 cut(s) 1644
BveI ACCTGC 2 cut(s) 1108, 3270
Cac8I GCNNGC 9 cut(s) 792, 1915, 3612, 4026, 4680, 4684, 4758, 4945, 5032
CaiI CAGNNNCTG 4 cut(s) 806, 1751, 4700, 4877
CciI TCATGA 4 cut(s) 460, 925, 3250, 3450
CfoI GCGC 2 cut(s) 90, 3963
Cfr13I GGNCC 6 cut(s) 398, 1218, 2066, 2360, 3401, 4874
CseI GACGC 1 cut(s) 2827
Csp6I GTAC 8 cut(s) 900, 1458, 1581, 2532, 2619, 2972, 4689, 4719
CspCI CAANNNNNGTGG 2 cut(s) 4558, 4593
CviQI GTAC 8 cut(s) 900, 1458, 1581, 2532, 2619, 2972, 4689, 4719
DraI TTTAAA 1 cut(s) 2757
DrdI GACNNNNNNGTC 2 cut(s) 296, 547
DseDI GACNNNNNNGTC 2 cut(s) 296, 547
EaeI YGGCCR 1 cut(s) 871
Eam1104I CTCTTC 9 cut(s) 564, 705, 1171, 1845, 2244, 3048, 3743, 4354, 4554
EarI CTCTTC 9 cut(s) 564, 705, 1171, 1845, 2244, 3048, 3743, 4354, 4554
EciI GGCGGA 2 cut(s) 190, 3560
Eco130I CCWWGG 5 cut(s) 1167, 2058, 2503, 4317, 4859
Eco147I AGGCCT 1 cut(s) 3458
Eco24I GRGCYC 4 cut(s) 2027, 4257, 4458, 4621
Eco31I GGTCTC 2 cut(s) 32, 316
Eco32I GATATC 1 cut(s) 2782
Eco47I GGWCC 4 cut(s) 398, 1218, 2360, 3401
Eco57I CTGAAG 9 cut(s) 924, 2308, 2904, 3032, 3060, 3141, 3281, 3750, 4578
Eco72I CACGTG 1 cut(s) 4020
Eco81I CCTNAGG 2 cut(s) 2138, 4377
EcoO109I RGGNCCY 2 cut(s) 2360, 4874
EcoRI GAATTC 1 cut(s) 1359
EcoRV GATATC 1 cut(s) 2782
EcoT14I CCWWGG 5 cut(s) 1167, 2058, 2503, 4317, 4859
EcoT22I ATGCAT 2 cut(s) 2943, 4285
EcoT38I GRGCYC 4 cut(s) 2027, 4257, 4458, 4621
ErhI CCWWGG 5 cut(s) 1167, 2058, 2503, 4317, 4859
Esp3I CGTCTC 1 cut(s) 2810
FalI AAGNNNNNCTT 6 cut(s) 1842, 1874, 3045, 3077, 3804, 3836
FaqI GGGAC 8 cut(s) 1303, 1569, 2118, 2145, 2250, 2373, 2445, 4028
FauI CCCGC 1 cut(s) 4817
FauNDI CATATG 1 cut(s) 1987
FbaI TGATCA 2 cut(s) 3253, 3667
FriOI GRGCYC 4 cut(s) 2027, 4257, 4458, 4621
GlaI GCGC 2 cut(s) 89, 3962
GsaI CCCAGC 2 cut(s) 947, 1771
GsuI CTGGAG 7 cut(s) 1565, 1978, 2501, 2579, 4221, 4827, 4854
HaeIII GGCC 9 cut(s) 5, 47, 873, 2068, 2329, 3458, 3512, 4875, 5066
HapII CCGG 5 cut(s) 85, 209, 426, 3929, 4791
HgaI GACGC 1 cut(s) 2827
HhaI GCGC 2 cut(s) 90, 3963
Hin6I GCGC 2 cut(s) 88, 3961
HinP1I GCGC 2 cut(s) 88, 3961
HincII GTYRAC 2 cut(s) 1573, 1606
HindII GTYRAC 2 cut(s) 1573, 1606
HindIII AAGCTT 4 cut(s) 2201, 3646, 4044, 5037
HpaI GTTAAC 2 cut(s) 1573, 1606
HpaII CCGG 5 cut(s) 85, 209, 426, 3929, 4791
HphI GGTGA 9 cut(s) 106, 692, 1007, 1550, 2663, 2675, 3113, 3928, 4780
Hpy166II GTNNAC 9 cut(s) 124, 936, 1573, 1606, 2081, 2621, 3104, 3387, 3569
Hpy8I GTNNAC 9 cut(s) 124, 936, 1573, 1606, 2081, 2621, 3104, 3387, 3569
Hpy99I CGWCG 7 cut(s) 23, 143, 146, 260, 284, 293, 296
HpyCH4IV ACGT 6 cut(s) 548, 1492, 2488, 3289, 4019, 4308
HpySE526I ACGT 6 cut(s) 548, 1492, 2488, 3289, 4019, 4308
HspAI GCGC 2 cut(s) 88, 3961
Ksp22I TGATCA 2 cut(s) 3253, 3667
KspAI GTTAAC 2 cut(s) 1573, 1606
LguI GCTCTTC 2 cut(s) 2244, 4554
LmnI GCTCC 7 cut(s) 86, 166, 1453, 1732, 3118, 3931, 4252
MaeII ACGT 6 cut(s) 548, 1492, 2488, 3289, 4019, 4308
MbiI CCGCTC 1 cut(s) 328
MfeI CAATTG 3 cut(s) 1931, 4650, 4734
MflI RGATCY 9 cut(s) 532, 784, 880, 2541, 3771, 3875, 3973, 4400, 4504
MhlI GDGCHC 6 cut(s) 2027, 2866, 3134, 4257, 4458, 4621
MlsI TGGCCA 1 cut(s) 873
MluNI TGGCCA 1 cut(s) 873
MmeI TCCRAC 4 cut(s) 177, 399, 834, 3428
Mox20I TGGCCA 1 cut(s) 873
Mph1103I ATGCAT 2 cut(s) 2943, 4285
MroXI GAANNNNTTC 1 cut(s) 3458
MscI TGGCCA 1 cut(s) 873
MslI CAYNNNNRTG 7 cut(s) 726, 1226, 2412, 2577, 3099, 3574, 3956
Msp20I TGGCCA 1 cut(s) 873
MspA1I CMGCKG 3 cut(s) 1741, 2853, 3610
MspCI CTTAAG 1 cut(s) 2980
MspI CCGG 5 cut(s) 85, 209, 426, 3929, 4791
MunI CAATTG 3 cut(s) 1931, 4650, 4734
Mva1269I GAATGC 2 cut(s) 1917, 4285
MvnI CGCG 2 cut(s) 90, 138
NciI CCSGG 2 cut(s) 85, 426
NcoI CCATGG 3 cut(s) 2058, 4317, 4859
NdeI CATATG 1 cut(s) 1987
NmeAIII GCCGAG 4 cut(s) 73, 229, 2845, 4253
NmuCI GTSAC 8 cut(s) 995, 1430, 1493, 2630, 3718, 4304, 4433, 4786
NsiI ATGCAT 2 cut(s) 2943, 4285
NspI RCATGY 5 cut(s) 794, 1675, 3744, 4028, 4686
NspV TTCGAA 1 cut(s) 689
PaeI GCATGC 3 cut(s) 794, 4028, 4686
PagI TCATGA 4 cut(s) 460, 925, 3250, 3450
PasI CCCWGGG 1 cut(s) 4451
PceI AGGCCT 1 cut(s) 3458
PciI ACATGT 2 cut(s) 1671, 3740
PciSI GCTCTTC 2 cut(s) 2244, 4554
PcsI WCGNNNNNNNCGW 7 cut(s) 105, 150, 201, 285, 288, 297, 341
PctI GAATGC 2 cut(s) 1917, 4285
PdmI GAANNNNTTC 1 cut(s) 3458
PflFI GACNNNGTC 1 cut(s) 296
PfoI TCCNGGA 3 cut(s) 2192, 2517, 4198
PmaCI CACGTG 1 cut(s) 4020
PmlI CACGTG 1 cut(s) 4020
Ppu21I YACGTR 1 cut(s) 4020
PpuMI RGGWCCY 1 cut(s) 2360
PscI ACATGT 2 cut(s) 1671, 3740
PshAI GACNNNNGTC 1 cut(s) 1249
PshBI ATTAAT 1 cut(s) 4628
Psp5II RGGWCCY 1 cut(s) 2360
PspCI CACGTG 1 cut(s) 4020
PspFI CCCAGC 2 cut(s) 943, 1767
PspPI GGNCC 6 cut(s) 398, 1218, 2066, 2360, 3401, 4874
PspPPI RGGWCCY 1 cut(s) 2360
PstI CTGCAG 7 cut(s) 445, 2168, 2992, 3281, 3684, 3808, 3856
PstNI CAGNNNCTG 4 cut(s) 806, 1751, 4700, 4877
PsuI RGATCY 9 cut(s) 532, 784, 880, 2541, 3771, 3875, 3973, 4400, 4504
PsyI GACNNNGTC 1 cut(s) 296
PvuII CAGCTG 3 cut(s) 1741, 2853, 3610
RsaI GTAC 8 cut(s) 901, 1459, 1582, 2533, 2620, 2973, 4690, 4720
RsaNI GTAC 8 cut(s) 900, 1458, 1581, 2532, 2619, 2972, 4689, 4719
RseI CAYNNNNRTG 7 cut(s) 726, 1226, 2412, 2577, 3099, 3574, 3956
SapI GCTCTTC 2 cut(s) 2244, 4554
Sau96I GGNCC 6 cut(s) 398, 1218, 2066, 2360, 3401, 4874
SbfI CCTGCAGG 1 cut(s) 2168
ScaI AGTACT 2 cut(s) 901, 1459
SdaI CCTGCAGG 1 cut(s) 2168
SduI GDGCHC 6 cut(s) 2027, 2866, 3134, 4257, 4458, 4621
SfcI CTRYAG 7 cut(s) 441, 2164, 2988, 3277, 3680, 3804, 3852
SfuI TTCGAA 1 cut(s) 689
SinI GGWCC 4 cut(s) 398, 1218, 2360, 3401
SmiMI CAYNNNNRTG 7 cut(s) 726, 1226, 2412, 2577, 3099, 3574, 3956
SmlI CTYRAG 3 cut(s) 536, 2113, 2980
SmoI CTYRAG 3 cut(s) 536, 2113, 2980
SpeI ACTAGT 1 cut(s) 3244
SphI GCATGC 3 cut(s) 794, 4028, 4686
Sse8387I CCTGCAGG 1 cut(s) 2168
SseBI AGGCCT 1 cut(s) 3458
SspI AATATT 1 cut(s) 1192
StuI AGGCCT 1 cut(s) 3458
StyI CCWWGG 5 cut(s) 1167, 2058, 2503, 4317, 4859
TaiI ACGT 6 cut(s) 551, 1495, 2491, 3292, 4022, 4311
TaqI TCGA 6 cut(s) 300, 689, 2835, 3616, 3732, 4903
TaqII GACCGA 2 cut(s) 56, 3066
TatI WGTACW 5 cut(s) 899, 1457, 2531, 2618, 4718
TauI GCSGC 1 cut(s) 249
TseFI GTSAC 8 cut(s) 995, 1430, 1493, 2630, 3718, 4304, 4433, 4786
Tsp45I GTSAC 8 cut(s) 995, 1430, 1493, 2630, 3718, 4304, 4433, 4786
TspGWI ACGGA 4 cut(s) 109, 309, 1601, 4452
Tth111I GACNNNGTC 1 cut(s) 296
Vha464I CTTAAG 1 cut(s) 2980
VpaK11BI GGWCC 4 cut(s) 398, 1218, 2360, 3401
VspI ATTAAT 1 cut(s) 4628
XbaI TCTAGA 1 cut(s) 1153
XceI RCATGY 5 cut(s) 794, 1675, 3744, 4028, 4686
XmaJI CCTAGG 1 cut(s) 2503
XmnI GAANNNNTTC 1 cut(s) 3458
ZrmI AGTACT 2 cut(s) 901, 1459
Zsp2I ATGCAT 2 cut(s) 2943, 4285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.