Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276615.1

Orthogroup ID

OG0005008

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 706

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 422 bp

atggtttcttctggaactgattgcctattggcagatgagcgagaagagaatcttccccatgtgcaacttcaatcagaaaataacttcgaaactcctttaagtggtgcaggcattctgaacattcaattgcaaagtccagataaaagatttcaacctggactagaaccccagtctaaaccatatgtctcaagaagtatgactgaaccatcccttcagtgccctccccctaaagactcagctctgagcaactccatggaagggccatctaagagtccacccaggaaaaggcaaactccaagtcctcccttgagaaatacccctcggagtcccctcagggaagagccaagtcagagtccctgcaggaaagaaacagctaggagtccttccaggaaaaagcttactgagagtctttcttggaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.56

Weight (kDa)

9.15

Isoelectric Point (pI)

103.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04235 AT2G04235 AT2G04235 AT2G04235
fragaria_vesca	FvH4_6g40370 FvH4_6g40370
malus_domestica	MD09G1131900.v1.1 MD09G1132300.v1.1 MD09G1132400.v1.1 MD17G1119600.v1.1
prunus_persica	Prupe.3G194100_v2.0.a1 Prupe.3G194100_v2.0.a1 Prupe.3G194100_v2.0.a1
pyrus_communis	pycom09g05380 pycom17g11000
rosa_chinensis	RchiOBHm_Chr2g0155571
rosa_laevigata	RLG00000020846
rosa_multiflora	Rmu_co8276615.1_g000001 Rmu_sc0003439.1_g000001 Rmu_sc0003971.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093640
rosa_rugosa	Rorug02G0447700 Rorug02G0447800 Rorug02G0447900 Rorug02G0448000
rosa_samantha	Rh2AG514400 Rh2BG525200 Rh2CG499300 Rh2DG534100
rosa_wichuraiana	Rw2G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	101, 258, 285
AgsI	TTSAA	3 cut(s)	71, 125, 152
AjnI	CCWGG	3 cut(s)	154, 278, 386
AluBI	AGCT	3 cut(s)	239, 374, 397
AluI	AGCT	3 cut(s)	239, 374, 397
Alw26I	GTCTC	1 cut(s)	190
AoxI	GGCC	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	283, 315
AspS9I	GGNCC	1 cut(s)	260
AsuII	TTCGAA	1 cut(s)	87
AxyI	CCTNAGG	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	221
BccI	CCATC	2 cut(s)	214, 271
BciT130I	CCWGG	3 cut(s)	156, 280, 388
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	161, 375
BfmI	CTRYAG	1 cut(s)	358
Bme1390I	CCNGG	3 cut(s)	156, 280, 388
BmgT120I	GGNCC	1 cut(s)	260
BmrFI	CCNGG	3 cut(s)	156, 280, 388
BmrI	ACTGGG	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	87
BpuEI	CTTGAG	2 cut(s)	172, 328
BsaJI	CCNNGG	3 cut(s)	252, 278, 320
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 258, 285
Bse1I	ACTGG	1 cut(s)	169
Bse21I	CCTNAGG	1 cut(s)	332
BseBI	CCWGG	3 cut(s)	156, 280, 388
BseDI	CCNNGG	3 cut(s)	252, 278, 320
BseGI	GGATG	1 cut(s)	206
BseLI	CCNNNNNNNGG	3 cut(s)	101, 258, 285
BseMII	CTCAG	4 cut(s)	233, 249, 346, 393
BseNI	ACTGG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	262
BslFI	GGGAC	2 cut(s)	312, 339
BslI	CCNNNNNNNGG	3 cut(s)	101, 258, 285
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	2 cut(s)	312, 339
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	262
Bsp119I	TTCGAA	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	4 cut(s)	234, 248, 345, 394
BspMAI	CTGCAG	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	252, 278, 320
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	3 cut(s)	156, 280, 388
Bst6I	CTCTTC	2 cut(s)	39, 333
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	5 cut(s)	235, 242, 267, 332, 402
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	206
BstMAI	GTCTC	1 cut(s)	190
BstNI	CCWGG	3 cut(s)	156, 280, 388
BstSCI	CCNGG	3 cut(s)	154, 278, 386
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	260
CviAII	CATG	2 cut(s)	59, 253
CviJI	RGCY	5 cut(s)	239, 262, 343, 374, 397
CviKI_1	RGCY	5 cut(s)	239, 262, 343, 374, 397
DdeI	CTNAG	5 cut(s)	235, 242, 267, 332, 402
Eam1104I	CTCTTC	2 cut(s)	39, 333
EarI	CTCTTC	2 cut(s)	39, 333
Eco130I	CCWWGG	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	154, 278, 386
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	62, 256
FaiI	YATR	5 cut(s)	60, 181, 183, 197, 254
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	2 cut(s)	312, 339
FatI	CATG	2 cut(s)	58, 252
FauNDI	CATATG	1 cut(s)	181
FokI	GGATG	1 cut(s)	193
FspBI	CTAG	2 cut(s)	161, 375
HaeIII	GGCC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	62, 256
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	7 cut(s)	49, 233, 271, 325, 352, 379, 406
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	5 cut(s)	76, 117, 243, 324, 351
Hpy188III	TCNNGA	3 cut(s)	12, 137, 189
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	221, 251, 393
HpyCH4V	TGCA	4 cut(s)	64, 107, 130, 360
HpyF3I	CTNAG	5 cut(s)	235, 242, 267, 332, 402
Hsp92II	CATG	2 cut(s)	62, 256
LguI	GCTCTTC	1 cut(s)	333
MaeI	CTAG	2 cut(s)	161, 375
MboII	GAAGA	3 cut(s)	44, 56, 350
MfeI	CAATTG	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	1 cut(s)	125
MlyI	GAGTC	6 cut(s)	227, 280, 334, 361, 388, 415
MnlI	CCTC	4 cut(s)	231, 312, 330, 341
MseI	TTAA	1 cut(s)	98
MspR9I	CCNGG	3 cut(s)	156, 280, 388
MunI	CAATTG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	111
MvaI	CCWGG	3 cut(s)	156, 280, 388
NcoI	CCATGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	181
NlaIII	CATG	2 cut(s)	62, 256
NspV	TTCGAA	1 cut(s)	87
PciSI	GCTCTTC	1 cut(s)	333
PctI	GAATGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	49
PfoI	TCCNGGA	1 cut(s)	386
PleI	GAGTC	6 cut(s)	227, 279, 333, 360, 387, 414
PpsI	GAGTC	6 cut(s)	227, 279, 333, 360, 387, 414
Psp6I	CCWGG	3 cut(s)	154, 278, 386
PspGI	CCWGG	3 cut(s)	154, 278, 386
PspPI	GGNCC	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	362
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	98
Sau96I	GGNCC	1 cut(s)	260
SbfI	CCTGCAGG	1 cut(s)	362
SchI	GAGTC	6 cut(s)	227, 280, 334, 361, 388, 415
ScrFI	CCNGG	3 cut(s)	156, 280, 388
SdaI	CCTGCAGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	4 cut(s)	157, 241, 376, 399
SfcI	CTRYAG	1 cut(s)	358
SfuI	TTCGAA	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	187, 307
SmoI	CTYRAG	2 cut(s)	187, 307
Sse8387I	CCTGCAGG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	125
SspMI	CTAG	2 cut(s)	161, 375
StyD4I	CCNGG	3 cut(s)	154, 278, 386
StyI	CCWWGG	1 cut(s)	252
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	221
TspRI	CASTG	1 cut(s)	221
XspI	CTAG	2 cut(s)	161, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.