Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005008

Physical Location & Seq

Genomic Coordinates Reverse (-)

10169178 .. 10170991

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1132300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCATTCTAAACCATATGTCTGCAGCAGCACAACTGAACCATACCTTCATAGCCCTTCCAGTAAAGAGTCAGCTGAGAACCCCTCCATGAAAGGGCCAATTCAGAGTCCACCCCAGGAGAATCCAACTCTCAACTCTACCGGGAGAAAGGCAATTCAGAGTTCCCTCAGGAAAGCGCCAAGTCAGAGTCCCTGCAGGAAAGAATCAACTCTGAGTCCTCCCAGAAAAGAACTTACTCAGAGTCCTGGAAAAGAACCAATTCGAAGTCCCTTTGTGAAAGAGCTAACTCGAAGTCCAATCGTGAGAGACCCAATTCGAAGTCCTACTGTGAAAGAGCCAATTCGTAGTCCCTTCATAAAAGATATGAATCGGATTCCCTCAAGAAAAGAGTCAACAAATAGCCCCTCCAGACTGGATTTATCTTGTGCAGCAGACACTGAGAATGTGCAACCCTTTGCTGGGAAGGACCTAGTATATCATGAGTCCAATTCAAATAGTCATCCTAGTGATGGTTGTTATCAGGGACTGCATATTTCACAAAATCCGTTTACAGGGAAAGATTCAGAGAATTCTGTCGGACAGAAACGACAAAACCTAGGAATAATCTCTGAGGATGGATACTGTACAAATACGATCCCCAGAATCCAGAAAAGTCCAAAAGTTCCCAGAATTGAGAACTGCAATCCAGAGTTCATGCTGCATCAGTCAAATAAACGTTACGATGACAGACAGAAGTGTGGGGGTGATACAACATGGCAGTGCTGGACTGATTTGTGTACTATTTCTTGTTTTGTTTTAGTCCACTTGAATAGCCAGGTTCTCTGGCAGATATGCTATTTTCTTCAGATTTCCTTCTTGCAGATTTTAGTAAAATTCTCAGGAGATACAGAATCTCGATTGGCAAGCAAACTAAATTTAAGAGCGATTGGTGTGCTGGAAGATATGCTGGTCCACCTATTGAAGTCCAGTCTCACATATGCTGAATTAAATGATCAATCAGGAAGTTCGACTGCCTCAATGTTGGGCATAAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

346

Amino Acids

38.51

Weight (kDa)

8.79

Isoelectric Point (pI)

69.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04235 AT2G04235 AT2G04235 AT2G04235
fragaria_vesca	FvH4_6g40370 FvH4_6g40370
malus_domestica	MD09G1131900.v1.1 MD09G1132300.v1.1 MD09G1132400.v1.1 MD17G1119600.v1.1
prunus_persica	Prupe.3G194100_v2.0.a1 Prupe.3G194100_v2.0.a1 Prupe.3G194100_v2.0.a1
pyrus_communis	pycom09g05380 pycom17g11000
rosa_chinensis	RchiOBHm_Chr2g0155571
rosa_laevigata	RLG00000020846
rosa_multiflora	Rmu_co8276615.1_g000001 Rmu_sc0003439.1_g000001 Rmu_sc0003971.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093640
rosa_rugosa	Rorug02G0447700 Rorug02G0447800 Rorug02G0447900 Rorug02G0448000
rosa_samantha	Rh2AG514400 Rh2BG525200 Rh2CG499300 Rh2DG534100
rosa_wichuraiana	Rw2G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	715
AclWI	GGATC	1 cut(s)	628
AcsI	RAATTY	3 cut(s)	568, 872, 913
AcuI	CTGAAG	1 cut(s)	827
AfaI	GTAC	2 cut(s)	625, 778
AfiI	CCNNNNNNNGG	5 cut(s)	93, 458, 459, 509, 551
AgsI	TTSAA	3 cut(s)	492, 808, 961
AjnI	CCWGG	3 cut(s)	114, 244, 813
AluBI	AGCT	2 cut(s)	74, 283
AluI	AGCT	2 cut(s)	74, 283
Alw26I	GTCTC	2 cut(s)	300, 974
AlwI	GGATC	1 cut(s)	628
AlwNI	CAGNNNCTG	2 cut(s)	437, 526
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	4 cut(s)	24, 27, 428, 697
ApoI	RAATTY	3 cut(s)	568, 872, 913
Asp700I	GAANNNNTTC	1 cut(s)	258
AspA2I	CCTAGG	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	3 cut(s)	95, 466, 949
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	755
AsuII	TTCGAA	2 cut(s)	262, 316
AvaII	GGWCC	2 cut(s)	466, 949
AvrII	CCTAGG	1 cut(s)	595
AxyI	CCTNAGG	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	36, 39, 440, 684
BccI	CCATC	2 cut(s)	503, 608
BcgI	CGANNNNNNTGC	2 cut(s)	913, 947
BciT130I	CCWGG	3 cut(s)	116, 246, 815
BciVI	GTATCC	1 cut(s)	611
BclI	TGATCA	1 cut(s)	991
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	300, 974
BfaI	CTAG	3 cut(s)	470, 504, 596
BfmI	CTRYAG	2 cut(s)	22, 193
BfoI	RGCGCY	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	611
BisI	GCNGC	4 cut(s)	25, 28, 429, 698
BlnI	CCTAGG	1 cut(s)	595
BlsI	GCNGC	4 cut(s)	26, 29, 430, 699
Bme1390I	CCNGG	4 cut(s)	116, 142, 246, 815
Bme18I	GGWCC	2 cut(s)	466, 949
BmgT120I	GGNCC	3 cut(s)	95, 466, 949
BmrFI	CCNGG	4 cut(s)	116, 142, 246, 815
BmsI	GCATC	1 cut(s)	709
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	391
Bpu14I	TTCGAA	2 cut(s)	262, 316
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	114, 595
Bsc4I	CCNNNNNNNGG	5 cut(s)	93, 458, 459, 509, 551
Bse1I	ACTGG	3 cut(s)	60, 417, 966
Bse21I	CCTNAGG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	3 cut(s)	116, 246, 815
BseDI	CCNNGG	2 cut(s)	114, 595
BseGI	GGATG	2 cut(s)	499, 619
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	5 cut(s)	93, 458, 459, 509, 551
BseMII	CTCAG	7 cut(s)	66, 181, 203, 251, 429, 600, 891
BseNI	ACTGG	3 cut(s)	60, 417, 966
BseXI	GCAGC	4 cut(s)	36, 39, 440, 684
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	4 cut(s)	174, 252, 333, 537
BslI	CCNNNNNNNGG	5 cut(s)	93, 458, 459, 509, 551
BsmAI	GTCTC	2 cut(s)	300, 974
BsmFI	GGGAC	4 cut(s)	174, 252, 333, 537
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	97
Bso31I	GGTCTC	1 cut(s)	300
Bsp119I	TTCGAA	2 cut(s)	262, 316
Bsp1407I	TGTACA	1 cut(s)	623
Bsp143I	GATC	2 cut(s)	633, 991
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	7 cut(s)	67, 180, 204, 250, 430, 601, 890
BspHI	TCATGA	1 cut(s)	478
BspMAI	CTGCAG	2 cut(s)	26, 197
BspPI	GGATC	1 cut(s)	628
BspT104I	TTCGAA	2 cut(s)	262, 316
BspTNI	GGTCTC	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	623
BsrI	ACTGG	3 cut(s)	60, 417, 966
BssECI	CCNNGG	2 cut(s)	114, 595
BssMI	GATC	2 cut(s)	633, 991
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	3 cut(s)	116, 246, 815
Bst4CI	ACNGT	2 cut(s)	328, 623
BstAUI	TGTACA	1 cut(s)	623
BstBI	TTCGAA	2 cut(s)	262, 316
BstC8I	GCNNGC	1 cut(s)	904
BstDEI	CTNAG	7 cut(s)	75, 167, 212, 237, 438, 609, 877
BstF5I	GGATG	2 cut(s)	499, 619
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	636, 994
BstMAI	GTCTC	2 cut(s)	300, 974
BstMBI	GATC	2 cut(s)	633, 991
BstNI	CCWGG	3 cut(s)	116, 246, 815
BstSCI	CCNGG	4 cut(s)	114, 140, 244, 813
BstSFI	CTRYAG	2 cut(s)	22, 193
BstV1I	GCAGC	4 cut(s)	36, 39, 440, 684
Bsu36I	CCTNAGG	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	611
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	499, 619
BtsI	GCAGTG	1 cut(s)	764
BtsIMutI	CAGTG	2 cut(s)	435, 764
Cac8I	GCNNGC	1 cut(s)	904
CaiI	CAGNNNCTG	2 cut(s)	437, 526
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	3 cut(s)	95, 466, 949
Csp6I	GTAC	2 cut(s)	624, 777
CviAII	CATG	4 cut(s)	88, 479, 694, 753
CviJI	RGCY	7 cut(s)	54, 74, 97, 283, 337, 402, 813
CviKI_1	RGCY	7 cut(s)	54, 74, 97, 283, 337, 402, 813
CviQI	GTAC	2 cut(s)	624, 777
DdeI	CTNAG	7 cut(s)	75, 167, 212, 237, 438, 609, 877
DpnI	GATC	2 cut(s)	635, 993
DpnII	GATC	2 cut(s)	633, 991
Eco130I	CCWWGG	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	466, 949
Eco57I	CTGAAG	1 cut(s)	827
Eco81I	CCTNAGG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	3 cut(s)	114, 244, 813
EcoT14I	CCWWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	4 cut(s)	91, 482, 697, 756
FaqI	GGGAC	4 cut(s)	174, 252, 333, 537
FatI	CATG	4 cut(s)	87, 478, 693, 752
FauNDI	CATATG	2 cut(s)	16, 976
FbaI	TGATCA	1 cut(s)	991
Fnu4HI	GCNGC	4 cut(s)	25, 28, 429, 698
FokI	GGATG	2 cut(s)	486, 626
Fsp4HI	GCNGC	4 cut(s)	25, 28, 429, 698
FspBI	CTAG	3 cut(s)	470, 504, 596
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	4 cut(s)	25, 28, 429, 698
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	4 cut(s)	91, 482, 697, 756
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	6 cut(s)	110, 393, 549, 777, 802, 952
Hpy8I	GTNNAC	6 cut(s)	110, 393, 549, 777, 802, 952
HpyAV	CCTTC	5 cut(s)	56, 66, 361, 457, 862
HpyCH4III	ACNGT	2 cut(s)	328, 623
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	9 cut(s)	4, 24, 195, 428, 448, 529, 681, 700, 859
HpyF3I	CTNAG	7 cut(s)	75, 167, 212, 237, 438, 609, 877
HpySE526I	ACGT	1 cut(s)	715
Hsp92II	CATG	4 cut(s)	91, 482, 697, 756
HspAI	GCGC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	991
Kzo9I	GATC	2 cut(s)	633, 991
Lsp1109I	GCAGC	4 cut(s)	36, 39, 440, 684
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	3 cut(s)	470, 504, 596
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	2 cut(s)	635, 993
MboI	GATC	2 cut(s)	633, 991
MboII	GAAGA	2 cut(s)	833, 950
MlyI	GAGTC	7 cut(s)	77, 115, 196, 223, 250, 398, 491
MmeI	TCCRAC	2 cut(s)	149, 556
MnlI	CCTC	7 cut(s)	94, 176, 228, 388, 415, 604, 1024
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	917, 986
MslI	CAYNNNNRTG	2 cut(s)	504, 757
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	4 cut(s)	116, 142, 246, 815
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	3 cut(s)	116, 246, 815
NciI	CCSGG	1 cut(s)	142
NdeI	CATATG	2 cut(s)	16, 976
NdeII	GATC	2 cut(s)	633, 991
NlaIII	CATG	4 cut(s)	91, 482, 697, 756
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	2 cut(s)	262, 316
PagI	TCATGA	1 cut(s)	478
PctI	GAATGC	1 cut(s)	4
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	7 cut(s)	121, 203, 367, 373, 560, 642, 890
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	26, 29, 430, 699
PleI	GAGTC	7 cut(s)	76, 114, 195, 222, 249, 397, 490
PpsI	GAGTC	7 cut(s)	76, 114, 195, 222, 249, 397, 490
PpuMI	RGGWCCY	1 cut(s)	466
Psp1406I	AACGTT	1 cut(s)	715
Psp5II	RGGWCCY	1 cut(s)	466
Psp6I	CCWGG	3 cut(s)	114, 244, 813
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	3 cut(s)	114, 244, 813
PspPI	GGNCC	3 cut(s)	95, 466, 949
PspPPI	RGGWCCY	1 cut(s)	466
PstI	CTGCAG	2 cut(s)	26, 197
PstNI	CAGNNNCTG	2 cut(s)	437, 526
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	625, 778
RsaNI	GTAC	2 cut(s)	624, 777
RseI	CAYNNNNRTG	2 cut(s)	504, 757
SaqAI	TTAA	2 cut(s)	917, 986
SatI	GCNGC	4 cut(s)	25, 28, 429, 698
Sau3AI	GATC	2 cut(s)	633, 991
Sau96I	GGNCC	3 cut(s)	95, 466, 949
SbfI	CCTGCAGG	1 cut(s)	197
SchI	GAGTC	7 cut(s)	77, 115, 196, 223, 250, 398, 491
ScrFI	CCNGG	4 cut(s)	116, 142, 246, 815
SdaI	CCTGCAGG	1 cut(s)	197
SetI	ASST	8 cut(s)	48, 76, 285, 471, 597, 718, 819, 957
SfaNI	GCATC	1 cut(s)	709
SfcI	CTRYAG	2 cut(s)	22, 193
SfuI	TTCGAA	2 cut(s)	262, 316
SinI	GGWCC	2 cut(s)	466, 949
SmiMI	CAYNNNNRTG	2 cut(s)	504, 757
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse8387I	CCTGCAGG	1 cut(s)	197
SspMI	CTAG	3 cut(s)	470, 504, 596
StyD4I	CCNGG	4 cut(s)	114, 140, 244, 813
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	328, 623
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	5 cut(s)	262, 289, 316, 895, 1007
TatI	WGTACW	2 cut(s)	623, 776
TfiI	GAWTC	7 cut(s)	121, 203, 367, 373, 560, 642, 890
Tru1I	TTAA	2 cut(s)	917, 986
Tru9I	TTAA	2 cut(s)	917, 986
TscAI	CASTG	2 cut(s)	442, 764
TseI	GCWGC	4 cut(s)	24, 27, 428, 697
TspDTI	ATGAA	5 cut(s)	38, 104, 343, 380, 682
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	442, 764
VpaK11BI	GGWCC	2 cut(s)	466, 949
XapI	RAATTY	3 cut(s)	568, 872, 913
XmaJI	CCTAGG	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	3 cut(s)	470, 504, 596
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.