Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003971.1

Orthogroup ID

OG0005008

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3330

Gene Structure 3330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003971.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1274 bp

taggcataactctccaggatggagactgtacagataagatccccgacagccagagaagttctaaaattcatagaagtgagaactatgatctccagttcatgttgggtcatgcaagtacacttcacagtgacagagagaagtatggcggtgaattgggtggtggtgcaatttgggagagctggactgatattctagtcaaattctcaggagattcggaacagttgctttctccattgacaagcaacctaaatttaaaagcgattggggtgctggaagatatcttgatacatctattgaaggctaaaaagtatgagacgctctgtgctgaaatcaaatctcagaaggtcaactgcatcagtgctgggcataaaagggtagctgaagcaaggttgctgctttatagattagcgaatgaaaaggcaaagttgcagttaatgcatttgaagcaccagaaattacagagtagggtgcagctcttaagctctgcagttcaggagtctcaaatgctgaagttgaacttcatccagtgtcagtccgaagctggtaaaggagagactcttgttgatgagagtcggtcatgtttagttaatcatgtgggtgaacaagaggcttcctgtgataatgtgagcacaatgagacaagagcttagagcttcagatgagaaaataaaaagtttaagcaaattttttcactctcatatcaagttcaaaggagaaccaagttatgccaacactattgcactagttcatgatcatctgaagacaagaacattctgcaggttaatacgtcaggagttacagtcatgggatgttgatgaatttgagattaagaatggtcattacaacattcttctcagctatcatggttacatcattcaaaggtttactggtaatatgggtccaacatcacgcatagtcatctcaaaaaagttgaataatgtaaagatcatgaaggccttcccgaacatagatgccctagttgcatttgattttgtgctagatgctgaggccaccagagaaatgtttgattcaagatgtttggcggaagaaacacaagttacccgttcacagctatgtaatctgctagacgtggctgaggaagtgcagctggctcgatttgagattgtaaatttgatccagacaagctttcatactccatccgatgatcagcttgatctgcagctttgtttccttaattgtaagagcagtagaaaggtcacactgtctctcgatatgacatgtttgaagaggtacaatcctctacaattctattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

423

Amino Acids

48.12

Weight (kDa)

7.0

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04235 AT2G04235 AT2G04235 AT2G04235
fragaria_vesca	FvH4_6g40370 FvH4_6g40370
malus_domestica	MD09G1131900.v1.1 MD09G1132300.v1.1 MD09G1132400.v1.1 MD17G1119600.v1.1
prunus_persica	Prupe.3G194100_v2.0.a1 Prupe.3G194100_v2.0.a1 Prupe.3G194100_v2.0.a1
pyrus_communis	pycom09g05380 pycom17g11000
rosa_chinensis	RchiOBHm_Chr2g0155571
rosa_laevigata	RLG00000020846
rosa_multiflora	Rmu_co8276615.1_g000001 Rmu_sc0003439.1_g000001 Rmu_sc0003971.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093640
rosa_rugosa	Rorug02G0447700 Rorug02G0447800 Rorug02G0447900 Rorug02G0448000
rosa_samantha	Rh2AG514400 Rh2BG525200 Rh2CG499300 Rh2DG534100
rosa_wichuraiana	Rw2G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	767
AciI	CCGC	2 cut(s)	146, 1042
AclWI	GGATC	2 cut(s)	33, 1128
AcsI	RAATTY	6 cut(s)	65, 199, 249, 682, 817, 1128
AcuI	CTGAAG	4 cut(s)	401, 529, 638, 778
AfaI	GTAC	3 cut(s)	30, 117, 1252
AflII	CTTAAG	1 cut(s)	477
AflIII	ACRYGT	1 cut(s)	1237
AgsI	TTSAA	8 cut(s)	297, 444, 516, 708, 877, 933, 1031, 1245
AhlI	ACTAGT	1 cut(s)	741
AjiI	CACGTC	1 cut(s)	1089
AjnI	CCWGG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	6 cut(s)	17, 307, 503, 547, 630, 1229
AlwI	GGATC	2 cut(s)	33, 1128
AoxI	GGCC	2 cut(s)	953, 1007
ApeKI	GCWGC	4 cut(s)	393, 471, 1104, 1179
ApoI	RAATTY	6 cut(s)	65, 199, 249, 682, 817, 1128
Asp700I	GAANNNNTTC	1 cut(s)	955
AspS9I	GGNCC	1 cut(s)	898
AsuHPI	GGTGA	2 cut(s)	160, 610
AvaII	GGWCC	1 cut(s)	898
BbsI	GAAGAC	1 cut(s)	766
Bbv12I	GWGCWC	1 cut(s)	631
BbvCI	CCTCAGC	2 cut(s)	1004, 1094
BbvI	GCAGC	4 cut(s)	380, 483, 1116, 1191
BccI	CCATC	2 cut(s)	13, 1164
BcgI	CGANNNNNNTGC	4 cut(s)	249, 283, 1093, 1127
BciT130I	CCWGG	1 cut(s)	16
BclI	TGATCA	2 cut(s)	750, 1164
BcoDI	GTCTC	6 cut(s)	17, 307, 503, 547, 630, 1229
BcuI	ACTAGT	1 cut(s)	741
BfaI	CTAG	5 cut(s)	193, 742, 976, 997, 1084
BfmI	CTRYAG	3 cut(s)	485, 774, 1177
BfrI	CTTAAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	767
BisI	GCNGC	4 cut(s)	394, 472, 1105, 1180
BlsI	GCNGC	4 cut(s)	395, 473, 1106, 1181
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	898
BmgBI	CACGTC	1 cut(s)	1089
BmgT120I	GGNCC	1 cut(s)	898
BmiI	GGNNCC	1 cut(s)	899
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	3 cut(s)	362, 960, 990
BpiI	GAAGAC	1 cut(s)	766
BpmI	CTGGAG	1 cut(s)	76
Bpu10I	CCTNAGC	2 cut(s)	1004, 1094
BsaXI	ACNNNNNCTCC	2 cut(s)	784, 814
Bse1I	ACTGG	3 cut(s)	93, 525, 891
BseBI	CCWGG	1 cut(s)	16
BseGI	GGATG	4 cut(s)	24, 521, 813, 1156
BseMII	CTCAG	5 cut(s)	218, 352, 867, 995, 1085
BseNI	ACTGG	3 cut(s)	93, 525, 891
BseXI	GCAGC	4 cut(s)	380, 483, 1116, 1191
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	2 cut(s)	490, 1123
BshFI	GGCC	2 cut(s)	955, 1009
BsiHKAI	GWGCWC	1 cut(s)	631
BsmAI	GTCTC	6 cut(s)	17, 307, 503, 547, 630, 1229
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	955, 1009
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	7 cut(s)	38, 87, 750, 944, 1133, 1164, 1173
BspACI	CCGC	2 cut(s)	146, 1042
BspANI	GGCC	2 cut(s)	955, 1009
BspCNI	CTCAG	5 cut(s)	217, 351, 866, 996, 1086
BspHI	TCATGA	2 cut(s)	747, 947
BspLI	GGNNCC	1 cut(s)	899
BspMAI	CTGCAG	3 cut(s)	489, 778, 1181
BspMI	ACCTGC	1 cut(s)	767
BspPI	GGATC	2 cut(s)	33, 1128
BspTI	CTTAAG	1 cut(s)	477
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	3 cut(s)	93, 525, 891
BssMI	GATC	7 cut(s)	38, 87, 750, 944, 1133, 1164, 1173
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	5 cut(s)	28, 127, 221, 800, 1223
Bst6I	CTCTTC	1 cut(s)	1240
BstAFI	CTTAAG	1 cut(s)	477
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstAUI	TGTACA	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	1109
BstDEI	CTNAG	6 cut(s)	204, 338, 646, 853, 1004, 1094
BstF5I	GGATG	4 cut(s)	24, 521, 813, 1156
BstKTI	GATC	7 cut(s)	41, 90, 753, 947, 1136, 1167, 1176
BstMAI	GTCTC	6 cut(s)	17, 307, 503, 547, 630, 1229
BstMBI	GATC	7 cut(s)	38, 87, 750, 944, 1133, 1164, 1173
BstMWI	GCNNNNNNNGC	4 cut(s)	435, 444, 979, 1176
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	1241
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	3 cut(s)	485, 774, 1177
BstV1I	GCAGC	4 cut(s)	380, 483, 1116, 1191
BstV2I	GAAGAC	1 cut(s)	766
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	955, 1009
BtrI	CACGTC	1 cut(s)	1089
BtsCI	GGATG	4 cut(s)	24, 521, 813, 1156
BtsIMutI	CAGTG	4 cut(s)	132, 363, 532, 1219
BveI	ACCTGC	1 cut(s)	767
Cac8I	GCNNGC	1 cut(s)	1109
CciI	TCATGA	2 cut(s)	747, 947
Cfr13I	GGNCC	1 cut(s)	898
CseI	GACGC	1 cut(s)	324
Csp6I	GTAC	3 cut(s)	29, 116, 1251
CviAII	CATG	9 cut(s)	99, 109, 578, 592, 748, 803, 862, 948, 1238
CviQI	GTAC	3 cut(s)	29, 116, 1251
DdeI	CTNAG	6 cut(s)	204, 338, 646, 853, 1004, 1094
DpnI	GATC	7 cut(s)	40, 89, 752, 946, 1135, 1166, 1175
DpnII	GATC	7 cut(s)	38, 87, 750, 944, 1133, 1164, 1173
DraI	TTTAAA	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	1240
EarI	CTCTTC	1 cut(s)	1240
EciI	GGCGGA	1 cut(s)	1057
Eco147I	AGGCCT	1 cut(s)	955
Eco32I	GATATC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	898
Eco57I	CTGAAG	4 cut(s)	401, 529, 638, 778
EcoRII	CCWGG	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	9 cut(s)	102, 112, 581, 595, 751, 806, 865, 951, 1241
FalI	AAGNNNNNCTT	2 cut(s)	502, 534
FatI	CATG	9 cut(s)	98, 108, 577, 591, 747, 802, 861, 947, 1237
FbaI	TGATCA	2 cut(s)	750, 1164
Fnu4HI	GCNGC	4 cut(s)	394, 472, 1105, 1180
FokI	GGATG	4 cut(s)	31, 508, 820, 1143
Fsp4HI	GCNGC	4 cut(s)	394, 472, 1105, 1180
FspBI	CTAG	5 cut(s)	193, 742, 976, 997, 1084
GluI	GCNGC	4 cut(s)	394, 472, 1105, 1180
GsaI	CCCAGC	1 cut(s)	365
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	2 cut(s)	955, 1009
HgaI	GACGC	1 cut(s)	324
Hin1II	CATG	9 cut(s)	102, 112, 581, 595, 751, 806, 865, 951, 1241
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	1143
HinfI	GANTC	5 cut(s)	211, 496, 555, 570, 1027
HphI	GGTGA	2 cut(s)	160, 610
Hpy166II	GTNNAC	5 cut(s)	118, 348, 601, 884, 1066
Hpy188I	TCNGA	6 cut(s)	216, 341, 537, 657, 758, 1161
Hpy8I	GTNNAC	5 cut(s)	118, 348, 601, 884, 1066
HpyAV	CCTTC	4 cut(s)	291, 336, 945, 966
HpyCH4III	ACNGT	5 cut(s)	28, 127, 221, 800, 1223
HpyCH4IV	ACGT	2 cut(s)	786, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	435, 444, 979, 1176
HpyF3I	CTNAG	6 cut(s)	204, 338, 646, 853, 1004, 1094
HpySE526I	ACGT	2 cut(s)	786, 1088
Hsp92II	CATG	9 cut(s)	102, 112, 581, 595, 751, 806, 865, 951, 1241
Ksp22I	TGATCA	2 cut(s)	750, 1164
Kzo9I	GATC	7 cut(s)	38, 87, 750, 944, 1133, 1164, 1173
Lsp1109I	GCAGC	4 cut(s)	380, 483, 1116, 1191
LweI	GCATC	3 cut(s)	362, 960, 990
MaeI	CTAG	5 cut(s)	193, 742, 976, 997, 1084
MaeII	ACGT	2 cut(s)	786, 1088
MaeIII	GTNAC	5 cut(s)	127, 794, 865, 1056, 1215
MalI	GATC	7 cut(s)	40, 89, 752, 946, 1135, 1166, 1175
MboI	GATC	7 cut(s)	38, 87, 750, 944, 1133, 1164, 1173
MboII	GAAGA	5 cut(s)	286, 771, 841, 1057, 1257
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	631
MlyI	GAGTC	3 cut(s)	505, 549, 579
MmeI	TCCRAC	1 cut(s)	925
MnlI	CCTC	5 cut(s)	600, 999, 1089, 1241, 1268
Mph1103I	ATGCAT	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	955
MseI	TTAA	8 cut(s)	253, 433, 478, 587, 676, 781, 827, 1193
MslI	CAYNNNNRTG	3 cut(s)	74, 596, 1071
MspA1I	CMGCKG	1 cut(s)	1107
MspCI	CTTAAG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	435, 444, 979, 1176
NdeII	GATC	7 cut(s)	38, 87, 750, 944, 1133, 1164, 1173
NlaIII	CATG	9 cut(s)	102, 112, 581, 595, 751, 806, 865, 951, 1241
NlaIV	GGNNCC	1 cut(s)	899
NmuCI	GTSAC	2 cut(s)	127, 1215
NsiI	ATGCAT	1 cut(s)	440
NspI	RCATGY	1 cut(s)	1241
PagI	TCATGA	2 cut(s)	747, 947
PceI	AGGCCT	1 cut(s)	955
PciI	ACATGT	1 cut(s)	1237
PdmI	GAANNNNTTC	1 cut(s)	955
PfeI	GAWTC	2 cut(s)	211, 1027
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	395, 473, 1106, 1181
PleI	GAGTC	3 cut(s)	504, 549, 578
PpsI	GAGTC	3 cut(s)	504, 549, 578
PscI	ACATGT	1 cut(s)	1237
Psp6I	CCWGG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	899
PspPI	GGNCC	1 cut(s)	898
PstI	CTGCAG	3 cut(s)	489, 778, 1181
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	1107
RsaI	GTAC	3 cut(s)	30, 117, 1252
RsaNI	GTAC	3 cut(s)	29, 116, 1251
RseI	CAYNNNNRTG	3 cut(s)	74, 596, 1071
SaqAI	TTAA	8 cut(s)	253, 433, 478, 587, 676, 781, 827, 1193
SatI	GCNGC	4 cut(s)	394, 472, 1105, 1180
Sau3AI	GATC	7 cut(s)	38, 87, 750, 944, 1133, 1164, 1173
Sau96I	GGNCC	1 cut(s)	898
SchI	GAGTC	3 cut(s)	505, 549, 579
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	3 cut(s)	362, 960, 990
SfcI	CTRYAG	3 cut(s)	485, 774, 1177
SinI	GGWCC	1 cut(s)	898
SmiMI	CAYNNNNRTG	3 cut(s)	74, 596, 1071
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
SpeI	ACTAGT	1 cut(s)	741
SseBI	AGGCCT	1 cut(s)	955
SsiI	CCGC	2 cut(s)	146, 1042
SspMI	CTAG	5 cut(s)	193, 742, 976, 997, 1084
StuI	AGGCCT	1 cut(s)	955
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	5 cut(s)	28, 127, 221, 800, 1223
TaiI	ACGT	2 cut(s)	789, 1091
TaqI	TCGA	2 cut(s)	1113, 1229
TaqII	GACCGA	1 cut(s)	563
TatI	WGTACW	2 cut(s)	28, 115
TfiI	GAWTC	2 cut(s)	211, 1027
Tru1I	TTAA	8 cut(s)	253, 433, 478, 587, 676, 781, 827, 1193
Tru9I	TTAA	8 cut(s)	253, 433, 478, 587, 676, 781, 827, 1193
TscAI	CASTG	4 cut(s)	132, 363, 532, 1226
TseFI	GTSAC	2 cut(s)	127, 1215
TseI	GCWGC	4 cut(s)	393, 471, 1104, 1179
Tsp45I	GTSAC	2 cut(s)	127, 1215
TspDTI	ATGAA	8 cut(s)	58, 87, 428, 510, 736, 830, 964, 1138
TspRI	CASTG	4 cut(s)	132, 363, 532, 1226
Vha464I	CTTAAG	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	898
XapI	RAATTY	6 cut(s)	65, 199, 249, 682, 817, 1128
XceI	RCATGY	1 cut(s)	1241
XmnI	GAANNNNTTC	1 cut(s)	955
XspI	CTAG	5 cut(s)	193, 742, 976, 997, 1084
Zsp2I	ATGCAT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.