Rmu_sc0003439.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003439.1
Physical Location & Seq
Reverse (-)
2 .. 2878
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003439.1_g000001.1.cds

Sequence Viewer

Length: 1514 bp
atggcctccaagacgcccgacgagccttgcatctccgagaccgaggtcgagacaatagccatgagaatcaagaggaaacgctcccggcgcgtgagcttcgccgacaccgagatcacctccgtccacatattcaaccgcgacgacgaggactccgacaacgctcccgactccgaactccagtccagctctctaaacgactccgccgagccggataatggtgccgtagggtttttcaaggatgtcggcggcgaaagcgacgatttcaaggattccgatgacgacgaggacgacgaaggagtcgatgggaggaagtcgtttttgagaccgctcggttcgccttctccgatgagtagcgttcctggctctgctacctccaacaacgaagaagatttctttggtcctgtatcagcagatttcattagacccggactatctgactctgcagcctcagatagctttcatgaaactacaatggacaccaccgcgttttcattgcattatcgtagtcttgcaaggtcagactttggaggagatctcaagaccccaacatcttttcgccttgcctttgaagagaagacaccaacccctaaccccagtgattcaggaagtcttatgtctctaacgaaaccaaagaatctaactcctcagtcttcggttcctgttgataaggtcagaggcggtgaagattcgaatgacatgagtattatagaagagaacccacataggtatgattatggaagactatctcctaaattagatgcacttttggcagaaggtagcaaggatctgcatgctgactcaattactgcctctattagcaaaatgccatccaagagaagtgaggttactgtgttggaaaaaaatggaattggccacatggatctaagagatggtaggagtactgaaatgggcaattttggcactcatgagatgtccactgacccagcatctatttctcgtatcaagttgagtgaggcaattggtctggttgctggtgactccattgacgaccaaatccggactccaaatcagttaatgaaggtcagtaacgaactcactaaagatctatttcaaaagggtatggagagtttagagttacctgctgcgaatggagaccttgtagcaaatgtcaatagtaaagcaactaaagctctagaaaattctcccaaggacagaagatataatactaatattgatcctcattctgataaggaggggtccagattcatgttatctgctagaggacagcagtcaattatgaatactcctaatttagcaagacattcagggacagtaactccttcctcaaaacataaagattggtatccagcaattcagaaaagcatttccaggttaagaattccagagccttctccccgtgcttctagtctcaaagatggaattgagaaattaagatgtagattgtcaagtcactcatccccaaatgctcctttaagtactgttatggctgacattagcaaagatctacaacgtgactttaacaaatctcctac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

505

Amino Acids

55.11

Weight (kDa)

5.09

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 1108
AccB1I GGYRCC 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 328
AccII CGCG 3 cut(s) 90, 138, 485
AccIII TCCGGA 1 cut(s) 1017
AciI CCGC 6 cut(s) 136, 201, 246, 326, 483, 678
AclWI GGATC 3 cut(s) 792, 888, 1190
AcoI YGGCCR 1 cut(s) 871
AcsI RAATTY 2 cut(s) 1159, 1359
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 2 cut(s) 901, 1459
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 5 cut(s) 133, 235, 265, 569, 1073
AjnI CCWGG 2 cut(s) 358, 1349
AjuI GAANNNNNNNTTGG 2 cut(s) 378, 410
AluBI AGCT 4 cut(s) 96, 186, 456, 1151
AluI AGCT 4 cut(s) 96, 186, 456, 1151
Alw26I GTCTC 6 cut(s) 32, 44, 316, 621, 1107, 1394
AlwI GGATC 3 cut(s) 792, 888, 1190
Aor13HI TCCGGA 1 cut(s) 1017
AoxI GGCC 2 cut(s) 3, 871
ApeKI GCWGC 2 cut(s) 443, 1103
ApoI RAATTY 2 cut(s) 1159, 1359
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 398, 1218
AsuC2I CCSGG 2 cut(s) 85, 426
AsuHPI GGTGA 3 cut(s) 106, 692, 1007
AsuII TTCGAA 1 cut(s) 689
AvaII GGWCC 2 cut(s) 398, 1218
BalI TGGCCA 1 cut(s) 873
BanI GGYRCC 1 cut(s) 218
BarI GAAGNNNNNNTAC 4 cut(s) 829, 861, 1168, 1200
BbsI GAAGAC 3 cut(s) 581, 642, 745
BbvI GCAGC 2 cut(s) 455, 1090
BccI CCATC 4 cut(s) 296, 835, 884, 1391
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 360, 1351
BciVI GTATCC 1 cut(s) 1335
BcnI CCSGG 2 cut(s) 85, 426
BcoDI GTCTC 6 cut(s) 32, 44, 316, 621, 1107, 1394
BfaI CTAG 3 cut(s) 1154, 1239, 1386
BfmI CTRYAG 1 cut(s) 441
BfuAI ACCTGC 1 cut(s) 1108
BfuI GTATCC 1 cut(s) 1335
BglII AGATCT 3 cut(s) 532, 1063, 1483
BisI GCNGC 3 cut(s) 247, 444, 1104
BlsI GCNGC 3 cut(s) 248, 445, 1105
BmcAI AGTACT 2 cut(s) 901, 1459
Bme1390I CCNGG 4 cut(s) 85, 360, 426, 1351
Bme18I GGWCC 2 cut(s) 398, 1218
BmgT120I GGNCC 2 cut(s) 398, 1218
BmiI GGNNCC 3 cut(s) 220, 657, 1219
BmrFI CCNGG 4 cut(s) 85, 360, 426, 1351
BmrI ACTGGG 1 cut(s) 588
BmsI GCATC 3 cut(s) 39, 748, 956
BmuI ACTGGG 1 cut(s) 588
BoxI GACNNNNGTC 2 cut(s) 44, 1249
BpiI GAAGAC 3 cut(s) 581, 642, 745
BplI GAGNNNNNCTC 4 cut(s) 101, 133, 519, 551
BpmI CTGGAG 1 cut(s) 161
Bpu14I TTCGAA 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 2 cut(s) 85, 426
BsaBI GATNNNNATC 1 cut(s) 1323
BsaHI GRCGYC 1 cut(s) 14
BsaI GGTCTC 3 cut(s) 32, 316, 1107
BsaJI CCNNGG 2 cut(s) 42, 1167
BsaWI WCCGGW 1 cut(s) 1017
BsaXI ACNNNNNCTCC 6 cut(s) 134, 164, 1104, 1134, 1282, 1312
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 2 cut(s) 178, 594
Bse3DI GCAATG 1 cut(s) 491
Bse8I GATNNNNATC 1 cut(s) 1323
BseAI TCCGGA 1 cut(s) 1017
BseBI CCWGG 2 cut(s) 360, 1351
BseDI CCNNGG 2 cut(s) 42, 1167
BseGI GGATG 3 cut(s) 244, 827, 1436
BseJI GATNNNNATC 1 cut(s) 1323
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 2 cut(s) 462, 659
BseNI ACTGG 2 cut(s) 178, 594
BseRI GAGGAG 2 cut(s) 543, 633
BseXI GCAGC 2 cut(s) 455, 1090
BseYI CCCAGC 1 cut(s) 943
Bsh1236I CGCG 3 cut(s) 90, 138, 485
BshFI GGCC 2 cut(s) 5, 873
BshNI GGYRCC 1 cut(s) 218
BsiSI CCGG 4 cut(s) 85, 209, 426, 1018
BslFI GGGAC 1 cut(s) 1303
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 6 cut(s) 32, 44, 316, 621, 1107, 1394
BsmFI GGGAC 1 cut(s) 1303
BsnI GGCC 2 cut(s) 5, 873
Bso31I GGTCTC 3 cut(s) 32, 316, 1107
Bsp119I TTCGAA 1 cut(s) 689
Bsp13I TCCGGA 1 cut(s) 1017
Bsp143I GATC 7 cut(s) 111, 532, 784, 880, 1063, 1195, 1483
BspACI CCGC 6 cut(s) 136, 201, 246, 326, 483, 678
BspANI GGCC 2 cut(s) 5, 873
BspCNI CTCAG 2 cut(s) 461, 658
BspEI TCCGGA 1 cut(s) 1017
BspFNI CGCG 3 cut(s) 90, 138, 485
BspHI TCATGA 2 cut(s) 460, 925
BspLI GGNNCC 3 cut(s) 220, 657, 1219
BspMAI CTGCAG 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 1108
BspPI GGATC 3 cut(s) 792, 888, 1190
BspT104I TTCGAA 1 cut(s) 689
BspT107I GGYRCC 1 cut(s) 218
BspTNI GGTCTC 3 cut(s) 32, 316, 1107
BsrBI CCGCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 491
BsrI ACTGG 2 cut(s) 178, 594
BssECI CCNNGG 2 cut(s) 42, 1167
BssMI GATC 7 cut(s) 111, 532, 784, 880, 1063, 1195, 1483
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 1167
Bst2UI CCWGG 2 cut(s) 360, 1351
Bst4CI ACNGT 3 cut(s) 850, 1294, 1462
Bst6I CTCTTC 2 cut(s) 564, 705
BstACI GRCGYC 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 3 cut(s) 448, 645, 884
BstF5I GGATG 3 cut(s) 244, 827, 1436
BstFNI CGCG 3 cut(s) 90, 138, 485
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 7 cut(s) 114, 535, 787, 883, 1066, 1198, 1486
BstMAI GTCTC 6 cut(s) 32, 44, 316, 621, 1107, 1394
BstMBI GATC 7 cut(s) 111, 532, 784, 880, 1063, 1195, 1483
BstMWI GCNNNNNNNGC 8 cut(s) 22, 87, 252, 334, 360, 767, 918, 1148
BstNI CCWGG 2 cut(s) 360, 1351
BstNSI RCATGY 1 cut(s) 794
BstPAI GACNNNNGTC 2 cut(s) 44, 1249
BstSCI CCNGG 4 cut(s) 83, 358, 424, 1349
BstSFI CTRYAG 1 cut(s) 441
BstUI CGCG 3 cut(s) 90, 138, 485
BstV1I GCAGC 2 cut(s) 455, 1090
BstV2I GAAGAC 3 cut(s) 581, 642, 745
BstX2I RGATCY 5 cut(s) 532, 784, 880, 1063, 1483
BstYI RGATCY 5 cut(s) 532, 784, 880, 1063, 1483
BsuI GTATCC 1 cut(s) 1335
BsuRI GGCC 2 cut(s) 5, 873
BtsCI GGATG 3 cut(s) 244, 827, 1436
BtsIMutI CAGTG 2 cut(s) 601, 936
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 1 cut(s) 792
CciI TCATGA 2 cut(s) 460, 925
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 398, 1218
CseI GACGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 900, 1458
CviAII CATG 7 cut(s) 61, 461, 697, 791, 877, 926, 1228
CviQI GTAC 2 cut(s) 900, 1458
DdeI CTNAG 3 cut(s) 448, 645, 884
DpnI GATC 7 cut(s) 113, 534, 786, 882, 1065, 1197, 1485
DpnII GATC 7 cut(s) 111, 532, 784, 880, 1063, 1195, 1483
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 871
Eam1104I CTCTTC 2 cut(s) 564, 705
EarI CTCTTC 2 cut(s) 564, 705
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 1167
Eco31I GGTCTC 3 cut(s) 32, 316, 1107
Eco47I GGWCC 2 cut(s) 398, 1218
EcoRI GAATTC 1 cut(s) 1359
EcoRII CCWGG 2 cut(s) 358, 1349
EcoT14I CCWWGG 1 cut(s) 1167
ErhI CCWWGG 1 cut(s) 1167
FaeI CATG 7 cut(s) 64, 464, 700, 794, 880, 929, 1231
FaqI GGGAC 1 cut(s) 1303
FatI CATG 7 cut(s) 60, 460, 696, 790, 876, 925, 1227
Fnu4HI GCNGC 3 cut(s) 247, 444, 1104
FokI GGATG 3 cut(s) 251, 814, 1423
Fsp4HI GCNGC 3 cut(s) 247, 444, 1104
FspBI CTAG 3 cut(s) 1154, 1239, 1386
GlaI GCGC 1 cut(s) 89
GluI GCNGC 3 cut(s) 247, 444, 1104
GsaI CCCAGC 1 cut(s) 947
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 2 cut(s) 5, 873
HapII CCGG 4 cut(s) 85, 209, 426, 1018
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 7 cut(s) 64, 464, 700, 794, 880, 929, 1231
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HpaII CCGG 4 cut(s) 85, 209, 426, 1018
HphI GGTGA 3 cut(s) 106, 692, 1007
Hpy166II GTNNAC 2 cut(s) 124, 936
Hpy8I GTNNAC 2 cut(s) 124, 936
Hpy99I CGWCG 6 cut(s) 23, 143, 146, 260, 284, 293
HpyAV CCTTC 6 cut(s) 287, 348, 767, 1033, 1311, 1380
HpyCH4III ACNGT 3 cut(s) 850, 1294, 1462
HpyCH4IV ACGT 1 cut(s) 1492
HpyCH4V TGCA 6 cut(s) 30, 443, 496, 512, 761, 790
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 87, 252, 334, 360, 767, 918, 1148
HpyF3I CTNAG 3 cut(s) 448, 645, 884
HpySE526I ACGT 1 cut(s) 1492
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 7 cut(s) 64, 464, 700, 794, 880, 929, 1231
HspAI GCGC 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 1017
Kzo9I GATC 7 cut(s) 111, 532, 784, 880, 1063, 1195, 1483
LmnI GCTCC 3 cut(s) 86, 166, 1453
Lsp1109I GCAGC 2 cut(s) 455, 1090
LweI GCATC 3 cut(s) 39, 748, 956
MaeI CTAG 3 cut(s) 1154, 1239, 1386
MaeII ACGT 1 cut(s) 1492
MaeIII GTNAC 7 cut(s) 844, 995, 1046, 1095, 1294, 1430, 1493
MalI GATC 7 cut(s) 113, 534, 786, 882, 1065, 1197, 1485
MbiI CCGCTC 1 cut(s) 328
MboI GATC 7 cut(s) 111, 532, 784, 880, 1063, 1195, 1483
MboII GAAGA 9 cut(s) 395, 398, 581, 586, 642, 695, 722, 750, 1188
MfeI CAATTG 1 cut(s) 978
MflI RGATCY 5 cut(s) 532, 784, 880, 1063, 1483
MlsI TGGCCA 1 cut(s) 873
MluNI TGGCCA 1 cut(s) 873
MlyI GAGTC 8 cut(s) 143, 161, 191, 306, 431, 791, 992, 1015
MmeI TCCRAC 3 cut(s) 177, 399, 834
Mox20I TGGCCA 1 cut(s) 873
MroI TCCGGA 1 cut(s) 1017
MscI TGGCCA 1 cut(s) 873
MseI TTAA 5 cut(s) 1034, 1355, 1412, 1454, 1500
MslI CAYNNNNRTG 1 cut(s) 726
Msp20I TGGCCA 1 cut(s) 873
MspI CCGG 4 cut(s) 85, 209, 426, 1018
MspR9I CCNGG 4 cut(s) 85, 360, 426, 1351
MunI CAATTG 1 cut(s) 978
MvaI CCWGG 2 cut(s) 360, 1351
MvnI CGCG 3 cut(s) 90, 138, 485
MwoI GCNNNNNNNGC 8 cut(s) 22, 87, 252, 334, 360, 767, 918, 1148
NciI CCSGG 2 cut(s) 85, 426
NdeII GATC 7 cut(s) 111, 532, 784, 880, 1063, 1195, 1483
NlaIII CATG 7 cut(s) 64, 464, 700, 794, 880, 929, 1231
NlaIV GGNNCC 3 cut(s) 220, 657, 1219
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 3 cut(s) 995, 1430, 1493
NspI RCATGY 1 cut(s) 794
NspV TTCGAA 1 cut(s) 689
PaeI GCATGC 1 cut(s) 794
PagI TCATGA 2 cut(s) 460, 925
PcsI WCGNNNNNNNCGW 7 cut(s) 105, 150, 201, 285, 288, 297, 341
PfeI GAWTC 6 cut(s) 66, 269, 599, 634, 686, 1224
PkrI GCNGC 3 cut(s) 248, 445, 1105
PleI GAGTC 8 cut(s) 143, 161, 191, 305, 431, 791, 992, 1015
PpsI GAGTC 8 cut(s) 143, 161, 191, 305, 431, 791, 992, 1015
PshAI GACNNNNGTC 2 cut(s) 44, 1249
Psp6I CCWGG 2 cut(s) 358, 1349
PspFI CCCAGC 1 cut(s) 943
PspGI CCWGG 2 cut(s) 358, 1349
PspN4I GGNNCC 3 cut(s) 220, 657, 1219
PspPI GGNCC 2 cut(s) 398, 1218
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 5 cut(s) 532, 784, 880, 1063, 1483
RsaI GTAC 2 cut(s) 901, 1459
RsaNI GTAC 2 cut(s) 900, 1458
RseI CAYNNNNRTG 1 cut(s) 726
SaqAI TTAA 5 cut(s) 1034, 1355, 1412, 1454, 1500
SatI GCNGC 3 cut(s) 247, 444, 1104
Sau3AI GATC 7 cut(s) 111, 532, 784, 880, 1063, 1195, 1483
Sau96I GGNCC 2 cut(s) 398, 1218
ScaI AGTACT 2 cut(s) 901, 1459
SchI GAGTC 8 cut(s) 143, 161, 191, 306, 431, 791, 992, 1015
ScrFI CCNGG 4 cut(s) 85, 360, 426, 1351
SfaNI GCATC 3 cut(s) 39, 748, 956
SfcI CTRYAG 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 689
SinI GGWCC 2 cut(s) 398, 1218
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
SphI GCATGC 1 cut(s) 794
SsiI CCGC 6 cut(s) 136, 201, 246, 326, 483, 678
SspI AATATT 1 cut(s) 1192
SspMI CTAG 3 cut(s) 1154, 1239, 1386
StyD4I CCNGG 4 cut(s) 83, 358, 424, 1349
StyI CCWWGG 1 cut(s) 1167
TaaI ACNGT 3 cut(s) 850, 1294, 1462
TaiI ACGT 1 cut(s) 1495
TaqI TCGA 3 cut(s) 48, 300, 689
TaqII GACCGA 1 cut(s) 56
TatI WGTACW 2 cut(s) 899, 1457
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 6 cut(s) 66, 269, 599, 634, 686, 1224
Tru1I TTAA 5 cut(s) 1034, 1355, 1412, 1454, 1500
Tru9I TTAA 5 cut(s) 1034, 1355, 1412, 1454, 1500
TscAI CASTG 2 cut(s) 601, 943
TseFI GTSAC 3 cut(s) 995, 1430, 1493
TseI GCWGC 2 cut(s) 443, 1103
Tsp45I GTSAC 3 cut(s) 995, 1430, 1493
TspDTI ATGAA 7 cut(s) 406, 449, 477, 480, 1052, 1216, 1274
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 2 cut(s) 601, 943
VpaK11BI GGWCC 2 cut(s) 398, 1218
XapI RAATTY 2 cut(s) 1159, 1359
XbaI TCTAGA 1 cut(s) 1153
XceI RCATGY 1 cut(s) 794
XspI CTAG 3 cut(s) 1154, 1239, 1386
ZrmI AGTACT 2 cut(s) 901, 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.