Rorug02G0447700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005008
Physical Location & Seq
Forward (+)
57419423 .. 57420559
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0447700.1

Sequence Viewer

Length: 393 bp
ATGAGCCTAGATTTTCTTGTGAATTTAGTTTTTGGCGCCGTTGCCGGGGATTGGAGTAAAATCCGATTCCTAGCTCGGTTTGCTTTCGGAAACTACGCCGCCCACGCCAAAGAACTTGACAACGCCGTCCCCAAGGAGCCTGTGCTTTTTCTCAAACCGACGTCATCTTACTTGGAAAACGGAGGCACCATCGAAATCCCTCACCCTCTGGAGTCGTTGGACCATGAGGTGGAGCTGGCTGTCATCATATCCAAGAAAGCTTGCGATGTTCCCCAGGCCAAGGCCATGGATTACGTTGGTGGTTATGCACTTGCTCTTGATATGACTGCCAGAGAGATTCAAGCTACTGCTAAGGAAATGATGGAAAAGAATGGAAATGCACTAAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.19

Weight (kDa)

5.32

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAA_hydrolase PF01557 29 - 119 4.5e-25 Fumarylacetoacetate (FAA) hydrolase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AatII GACGTC 1 cut(s) 164
AccB1I GGYRCC 2 cut(s) 35, 185
AccB7I CCANNNNNTGG 1 cut(s) 229
AciI CCGC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 2 cut(s) 36, 161
AfiI CCNNNNNNNGG 4 cut(s) 45, 51, 229, 280
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 4 cut(s) 74, 235, 260, 344
AluI AGCT 4 cut(s) 74, 235, 260, 344
AoxI GGCC 2 cut(s) 276, 282
ApoI RAATTY 1 cut(s) 22
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 220
BanI GGYRCC 2 cut(s) 35, 185
BccI CCATC 2 cut(s) 197, 355
BceAI ACGGC 2 cut(s) 23, 110
BciT130I CCWGG 1 cut(s) 275
BcnI CCSGG 1 cut(s) 46
BfaI CTAG 2 cut(s) 8, 71
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 46, 275
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 3 cut(s) 37, 138, 187
BmrFI CCNGG 2 cut(s) 46, 275
BpmI CTGGAG 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 46
BsaHI GRCGYC 2 cut(s) 36, 161
BsaJI CCNNGG 5 cut(s) 45, 132, 273, 279, 285
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 51, 229, 280
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 5 cut(s) 45, 132, 273, 279, 285
BseLI CCNNNNNNNGG 4 cut(s) 45, 51, 229, 280
BshFI GGCC 2 cut(s) 278, 284
BshNI GGYRCC 2 cut(s) 35, 185
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 4 cut(s) 45, 51, 229, 280
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 2 cut(s) 278, 284
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 1 cut(s) 99
BspANI GGCC 2 cut(s) 278, 284
BspLI GGNNCC 3 cut(s) 37, 138, 187
BspT107I GGYRCC 2 cut(s) 35, 185
BssECI CCNNGG 5 cut(s) 45, 132, 273, 279, 285
BssNI GRCGYC 2 cut(s) 36, 161
BssT1I CCWWGG 3 cut(s) 132, 279, 285
Bst2UI CCWGG 1 cut(s) 275
BstACI GRCGYC 2 cut(s) 36, 161
BstC8I GCNNGC 2 cut(s) 237, 262
BstDEI CTNAG 1 cut(s) 351
BstDSI CCRYGG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 80, 104
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 44, 273
BstXI CCANNNNNNTGG 1 cut(s) 286
BsuRI GGCC 2 cut(s) 278, 284
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 237, 262
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 220
CviAII CATG 2 cut(s) 224, 286
CviJI RGCY 9 cut(s) 6, 74, 139, 235, 239, 260, 278, 284, 344
CviKI_1 RGCY 9 cut(s) 6, 74, 139, 235, 239, 260, 278, 284, 344
DdeI CTNAG 1 cut(s) 351
DinI GGCGCC 1 cut(s) 37
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
Eco130I CCWWGG 3 cut(s) 132, 279, 285
Eco47I GGWCC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 3 cut(s) 132, 279, 285
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
ErhI CCWWGG 3 cut(s) 132, 279, 285
FaeI CATG 2 cut(s) 227, 289
FaiI YATR 5 cut(s) 225, 248, 287, 306, 323
FaqI GGGAC 1 cut(s) 113
FatI CATG 2 cut(s) 223, 285
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 2 cut(s) 8, 71
GlaI GCGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 2 cut(s) 278, 284
HapII CCGG 1 cut(s) 45
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 2 cut(s) 36, 161
Hin1II CATG 2 cut(s) 227, 289
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 3 cut(s) 66, 212, 337
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 2 cut(s) 65, 89
Hpy188III TCNNGA 2 cut(s) 209, 317
Hpy99I CGWCG 1 cut(s) 163
HpyCH4IV ACGT 2 cut(s) 161, 294
HpyCH4V TGCA 2 cut(s) 308, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 104
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 2 cut(s) 161, 294
Hsp92I GRCGYC 2 cut(s) 36, 161
Hsp92II CATG 2 cut(s) 227, 289
HspAI GCGC 1 cut(s) 36
KasI GGCGCC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 136, 232
LpnPI CCDG 7 cut(s) 58, 153, 194, 221, 260, 287, 343
MaeI CTAG 2 cut(s) 8, 71
MaeII ACGT 2 cut(s) 161, 294
MluCI AATT 1 cut(s) 22
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 176, 210, 216, 220
MseI TTAA 1 cut(s) 391
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 46, 275
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 80, 104
NarI GGCGCC 1 cut(s) 36
NciI CCSGG 1 cut(s) 46
NcoI CCATGG 1 cut(s) 285
NlaIII CATG 2 cut(s) 227, 289
NlaIV GGNNCC 3 cut(s) 37, 138, 187
PfeI GAWTC 2 cut(s) 66, 337
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 220
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 3 cut(s) 37, 138, 187
PspPI GGNCC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 391
SatI GCNGC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 46, 275
SetI ASST 7 cut(s) 76, 164, 231, 237, 262, 297, 346
SfoI GGCGCC 1 cut(s) 37
SinI GGWCC 1 cut(s) 220
Sse9I AATT 1 cut(s) 22
SsiI CCGC 1 cut(s) 99
SspDI GGCGCC 1 cut(s) 35
SspMI CTAG 2 cut(s) 8, 71
StyD4I CCNGG 2 cut(s) 44, 273
StyI CCWWGG 3 cut(s) 132, 279, 285
TaiI ACGT 2 cut(s) 164, 297
TaqI TCGA 1 cut(s) 192
TasI AATT 1 cut(s) 22
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 66, 337
Tru1I TTAA 1 cut(s) 391
Tru9I TTAA 1 cut(s) 391
TspGWI ACGGA 1 cut(s) 195
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 22
XspI CTAG 2 cut(s) 8, 71
ZraI GACGTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.