Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010587

Physical Location & Seq

Genomic Coordinates Reverse (-)

32669700 .. 32670930

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41601.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAAATTCAAGGGTTTCATTTTGCTAGGGCTTCTGTTTGCAGTAGTTCTCATCTCTTCCATTGACGCAGCTGCTGAGACAACCAAACATGAGAATAAAGTGGATGCCAGGGTAGGTGAAAAAGAAACGAAACCGAACACAATAGAGGATTCAAAGCCGGTCGAAATTGGCCGATGCGGTTGTTGCTGTCGTCATAACTTGTGGGGATGCGGTTTGCACTGTTGTGACGGTAGAGGACCTGGCACTGGCTGTCCAAACCGGCCACCTAATGCAGCCACCACTACAGGTGTCGGAGGCGGTATTCCGGGTGTTGGAGGAGGCAGTCCGAGTGTAGGAGTAGGTGAAAAAGAAACGAAACCAAACCCAGTAGAGGATTCAAAGCCGGTCGACATTGGCCGATGCGGGTGTTGCTGTCGTCATAATTTGTGGGGATGCGGTTTGCACTGTTGTGACGGTAGAGGACCTGGCACTGGCTGTAATGTAGCCAGGACTACAGGTGTTGGCGGCATTCCAGATCTTGGGGTCGGCATTCCGGGTGTTGGAGGCGGCATTCCAGGTGTCGGAGGAGGCATTCCGGGTGTCGGAGGAGGCGGCATTCCGGGTGTCGGAGGAGGCGGCATTCCGGGTGTGGGAGGAGGCATTCCGGGTGTCGGAGGAGGCGGCATTCCGGGTGTTGGAGGCGGCATTCCGGGGGTTGGAGGAGGCAGTCCGGGGGTTGGCGGCGGCATTCCAGGCATAGGAGGCAGTGCTCCAGGGGCTGGTGGAGGAGAAGGAGGCAGCAGGCCAAGCATGCCCGGCCCTGGAGGAATTGGAGGTGGCGGACAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

25.7

Weight (kDa)

7.87

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41601 FvH4_6g41604
prunus_persica	Prupe.3G205600_v2.0.a1 Prupe.3G205700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157361
rosa_laevigata	RLG00000020978 RLG00000020980 RLG00000020981
rosa_multiflora	Rmu_sc0010103.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029540 Rroxscaffold_2G00092280 Rroxscaffold_2G00092300
rosa_rugosa	Rorug02G0459700 Rorug02G0459900
rosa_samantha	Rh2AG524600 Rh2BG539000 Rh2CG509400 Rh2CG509600 Rh2DG547900
rosa_wichuraiana	Rw2G043430 Rw2G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	518, 758
AccI	GTMKAC	1 cut(s)	387
AcoI	YGGCCR	3 cut(s)	169, 260, 394
AcsI	RAATTY	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	10, 153, 378
AjnI	CCWGG	8 cut(s)	107, 238, 463, 485, 553, 730, 751, 799
AleI	CACNNNNGTG	2 cut(s)	222, 447
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	71
AlwNI	CAGNNNCTG	2 cut(s)	74, 758
AoxI	GGCC	5 cut(s)	169, 260, 394, 782, 796
ApeKI	GCWGC	4 cut(s)	68, 71, 272, 777
ApoI	RAATTY	1 cut(s)	5
AspS9I	GGNCC	3 cut(s)	236, 461, 797
AsuHPI	GGTGA	2 cut(s)	128, 353
AvaII	GGWCC	2 cut(s)	236, 461
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	4 cut(s)	58, 80, 284, 789
BciT130I	CCWGG	8 cut(s)	109, 240, 465, 487, 555, 732, 753, 801
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	2 cut(s)	282, 492
BglII	AGATCT	1 cut(s)	514
Bme18I	GGWCC	2 cut(s)	236, 461
BmgT120I	GGNCC	3 cut(s)	236, 461, 797
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	5 cut(s)	94, 164, 197, 389, 422
BmuI	ACTGGG	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	735, 822
BsaJI	CCNNGG	5 cut(s)	108, 689, 710, 752, 799
Bse118I	RCCGGY	3 cut(s)	157, 258, 382
Bse1I	ACTGG	3 cut(s)	250, 365, 475
BseBI	CCWGG	8 cut(s)	109, 240, 465, 487, 555, 732, 753, 801
BseDI	CCNNGG	5 cut(s)	108, 689, 710, 752, 799
BseGI	GGATG	3 cut(s)	109, 212, 437
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	3 cut(s)	250, 365, 475
BseRI	GAGGAG	8 cut(s)	330, 579, 600, 624, 648, 669, 714, 780
BseXI	GCAGC	4 cut(s)	58, 80, 284, 789
Bsh1285I	CGRYCG	2 cut(s)	162, 387
BshFI	GGCC	5 cut(s)	171, 262, 396, 784, 798
BsiEI	CGRYCG	2 cut(s)	162, 387
BsiHKAI	GWGCWC	1 cut(s)	751
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	5 cut(s)	171, 262, 396, 784, 798
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	1 cut(s)	514
BspANI	GGCC	5 cut(s)	171, 262, 396, 784, 798
BspCNI	CTCAG	1 cut(s)	67
BsrFI	RCCGGY	3 cut(s)	157, 258, 382
BsrI	ACTGG	3 cut(s)	250, 365, 475
BssAI	RCCGGY	3 cut(s)	157, 258, 382
BssECI	CCNNGG	5 cut(s)	108, 689, 710, 752, 799
BssMI	GATC	1 cut(s)	514
Bst2UI	CCWGG	8 cut(s)	109, 240, 465, 487, 555, 732, 753, 801
Bst4CI	ACNGT	4 cut(s)	221, 230, 446, 455
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	782, 791
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	109, 212, 437
BstKTI	GATC	1 cut(s)	517
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	514
BstMCI	CGRYCG	2 cut(s)	162, 387
BstMWI	GCNNNNNNNGC	8 cut(s)	183, 408, 732, 741, 755, 786, 790, 795
BstNI	CCWGG	8 cut(s)	109, 240, 465, 487, 555, 732, 753, 801
BstNSI	RCATGY	1 cut(s)	793
BstSFI	CTRYAG	2 cut(s)	282, 492
BstV1I	GCAGC	4 cut(s)	58, 80, 284, 789
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	5 cut(s)	171, 262, 396, 784, 798
BtsCI	GGATG	3 cut(s)	109, 212, 437
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	5 cut(s)	217, 243, 442, 468, 751
Cac8I	GCNNGC	2 cut(s)	782, 791
CaiI	CAGNNNCTG	2 cut(s)	74, 758
Cfr10I	RCCGGY	3 cut(s)	157, 258, 382
Cfr13I	GGNCC	3 cut(s)	236, 461, 797
CseI	GACGC	1 cut(s)	74
CviAII	CATG	2 cut(s)	89, 790
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
EaeI	YGGCCR	3 cut(s)	169, 260, 394
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	236, 461
EcoO109I	RGGNCCY	2 cut(s)	236, 461
EcoRII	CCWGG	8 cut(s)	107, 238, 463, 485, 553, 730, 751, 799
FaeI	CATG	2 cut(s)	92, 793
FaiI	YATR	5 cut(s)	90, 195, 420, 737, 791
FatI	CATG	2 cut(s)	88, 789
FauI	CCCGC	1 cut(s)	395
FblI	GTMKAC	1 cut(s)	387
FokI	GGATG	3 cut(s)	116, 219, 444
FspBI	CTAG	1 cut(s)	26
GsuI	CTGGAG	2 cut(s)	735, 822
HaeIII	GGCC	5 cut(s)	171, 262, 396, 784, 798
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	92, 793
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	2 cut(s)	149, 374
HphI	GGTGA	2 cut(s)	128, 353
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	6 cut(s)	293, 327, 563, 584, 608, 653
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	1 cut(s)	764
HpyCH4III	ACNGT	4 cut(s)	221, 230, 446, 455
HpyCH4V	TGCA	4 cut(s)	41, 217, 272, 442
HpyF10VI	GCNNNNNNNGC	8 cut(s)	183, 408, 732, 741, 755, 786, 790, 795
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	92, 793
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	4 cut(s)	58, 80, 284, 789
LweI	GCATC	5 cut(s)	94, 164, 197, 389, 422
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	224, 449
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	1 cut(s)	48
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	4 cut(s)	5, 165, 421, 807
MmeI	TCCRAC	9 cut(s)	271, 292, 520, 541, 562, 586, 631, 655, 676
MslI	CAYNNNNRTG	2 cut(s)	222, 447
MspA1I	CMGCKG	1 cut(s)	71
MvaI	CCWGG	8 cut(s)	109, 240, 465, 487, 555, 732, 753, 801
MwoI	GCNNNNNNNGC	8 cut(s)	183, 408, 732, 741, 755, 786, 790, 795
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	2 cut(s)	92, 793
NmuCI	GTSAC	2 cut(s)	224, 449
NspI	RCATGY	1 cut(s)	793
OliI	CACNNNNGTG	2 cut(s)	222, 447
PaeI	GCATGC	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	149, 374
PflMI	CCANNNNNTGG	2 cut(s)	518, 758
PpuMI	RGGWCCY	2 cut(s)	236, 461
Psp5II	RGGWCCY	2 cut(s)	236, 461
Psp6I	CCWGG	8 cut(s)	107, 238, 463, 485, 553, 730, 751, 799
PspGI	CCWGG	8 cut(s)	107, 238, 463, 485, 553, 730, 751, 799
PspPI	GGNCC	3 cut(s)	236, 461, 797
PspPPI	RGGWCCY	2 cut(s)	236, 461
PstNI	CAGNNNCTG	2 cut(s)	74, 758
PsuI	RGATCY	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	71
RseI	CAYNNNNRTG	2 cut(s)	222, 447
SalI	GTCGAC	1 cut(s)	386
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	3 cut(s)	236, 461, 797
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	5 cut(s)	94, 164, 197, 389, 422
SfcI	CTRYAG	2 cut(s)	282, 492
SinI	GGWCC	2 cut(s)	236, 461
SmiMI	CAYNNNNRTG	2 cut(s)	222, 447
SphI	GCATGC	1 cut(s)	793
Sse9I	AATT	4 cut(s)	5, 165, 421, 807
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	4 cut(s)	221, 230, 446, 455
TaqI	TCGA	2 cut(s)	162, 387
TasI	AATT	4 cut(s)	5, 165, 421, 807
TauI	GCSGC	8 cut(s)	507, 549, 594, 618, 663, 684, 723, 726
TfiI	GAWTC	2 cut(s)	149, 374
TscAI	CASTG	5 cut(s)	224, 250, 449, 475, 751
TseFI	GTSAC	2 cut(s)	224, 449
TseI	GCWGC	4 cut(s)	68, 71, 272, 777
Tsp45I	GTSAC	2 cut(s)	224, 449
TspDTI	ATGAA	2 cut(s)	7, 17
TspRI	CASTG	5 cut(s)	224, 250, 449, 475, 751
Van91I	CCANNNNNTGG	2 cut(s)	518, 758
VpaK11BI	GGWCC	2 cut(s)	236, 461
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	793
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.