Rw2G043430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010587
Physical Location & Seq
Reverse (-)
69864817 .. 69865537
721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043430.1

Sequence Viewer

Length: 630 bp
ATGAAATTCAAGGGTTTCATTTTGCTAGGGCTTCTGTTTGCAGTAGTTCTCATCTCTTCCATTGACGCAGCGGCTGAGACATCCAAACATGAGAATAAAGTGGAAGCCAGGGTAGCCCCAAAAGAAAAGAAATCGAGCCAAGTAGAGGATTCAAAGCCGGTCGAAATTGGCCGATGTGGGTGCTGCTGTCGTCATAATATGTGGGGATGCGGTTTGCACTGTTGTGATGGTAGAGGACCTGGCACTGGCTGTCCACATGGAGGCAGCACTACAGGTGTTGGCGCTATTCCAGGTGTTGGAGGCGGCATTCCGGGTTTTGGAGGCGGCATTCCGGGTGTTGGAGGCGGCATTCCGGGGGTTGGAGGAGGCATTCCGGGGGTTGGAGGCGGCATTCCGGGCGTTGGAGGAGGCATTCCCGGCGTTGGAGGAGGCAGCATTCCGGGTGTTGGAGGAGGCGTTCCAGGTGTTGGAGGCATTCCGGGGGTTGGCGGTGGCGTTCCAGGGAATGGCGGCATTCCACGCGTTGGACGCGGTGTTCCAGGGGTTGGTGGAGGAATAGGAGGCGGCATTCCAGGCATGCCCGGCCGTGGAGGAATTGGGGGTGGCCGAGTCCGTGGCCGAGGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

19.3

Weight (kDa)

9.5

Isoelectric Point (pI)

25.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 5 cut(s) 296, 467, 506, 524, 545
AccII CGCG 2 cut(s) 522, 531
AcoI YGGCCR 4 cut(s) 169, 583, 604, 616
AcsI RAATTY 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 2 cut(s) 10, 153
AjnI CCWGG 7 cut(s) 107, 238, 289, 460, 499, 538, 571
AleI CACNNNNGTG 1 cut(s) 222
AloI GAACNNNNNNTCC 4 cut(s) 441, 473, 519, 551
Alw26I GTCTC 1 cut(s) 71
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 4 cut(s) 169, 583, 604, 616
ApeKI GCWGC 4 cut(s) 68, 183, 264, 432
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 9 cut(s) 312, 333, 354, 375, 396, 417, 441, 480, 582
AvaII GGWCC 1 cut(s) 236
BbvI GCAGC 4 cut(s) 80, 170, 276, 444
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 570
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 7 cut(s) 109, 240, 291, 462, 501, 540, 573
BcnI CCSGG 9 cut(s) 312, 333, 354, 375, 396, 417, 441, 480, 582
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmsI GCATC 1 cut(s) 197
BpuMI CCSGG 9 cut(s) 312, 333, 354, 375, 396, 417, 441, 480, 582
BsaJI CCNNGG 9 cut(s) 108, 353, 374, 479, 500, 539, 586, 613, 619
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 7 cut(s) 109, 240, 291, 462, 501, 540, 573
BseDI CCNNGG 9 cut(s) 108, 353, 374, 479, 500, 539, 586, 613, 619
BseGI GGATG 2 cut(s) 80, 212
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 4 cut(s) 378, 420, 441, 465
BseX3I CGGCCG 1 cut(s) 583
BseXI GCAGC 4 cut(s) 80, 170, 276, 444
Bsh1236I CGCG 2 cut(s) 522, 531
Bsh1285I CGRYCG 2 cut(s) 162, 586
BshFI GGCC 4 cut(s) 171, 585, 606, 618
BsiEI CGRYCG 2 cut(s) 162, 586
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 4 cut(s) 171, 585, 606, 618
BspANI GGCC 4 cut(s) 171, 585, 606, 618
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 2 cut(s) 522, 531
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 9 cut(s) 108, 353, 374, 479, 500, 539, 586, 613, 619
Bst2UI CCWGG 7 cut(s) 109, 240, 291, 462, 501, 540, 573
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 578
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 2 cut(s) 586, 613
BstF5I GGATG 2 cut(s) 80, 212
BstFNI CGCG 2 cut(s) 522, 531
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstMAI GTCTC 1 cut(s) 71
BstMCI CGRYCG 2 cut(s) 162, 586
BstMWI GCNNNNNNNGC 7 cut(s) 113, 396, 417, 519, 528, 573, 582
BstNI CCWGG 7 cut(s) 109, 240, 291, 462, 501, 540, 573
BstNSI RCATGY 1 cut(s) 580
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 2 cut(s) 522, 531
BstV1I GCAGC 4 cut(s) 80, 170, 276, 444
BstZI CGGCCG 1 cut(s) 583
BsuRI GGCC 4 cut(s) 171, 585, 606, 618
BtgI CCRYGG 2 cut(s) 586, 613
BtsCI GGATG 2 cut(s) 80, 212
BtsIMutI CAGTG 2 cut(s) 217, 243
Cac8I GCNNGC 1 cut(s) 578
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 236
CseI GACGC 2 cut(s) 74, 537
CviAII CATG 3 cut(s) 89, 257, 577
DdeI CTNAG 1 cut(s) 75
EaeI YGGCCR 4 cut(s) 169, 583, 604, 616
EagI CGGCCG 1 cut(s) 583
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
EclXI CGGCCG 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 236
Eco52I CGGCCG 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 7 cut(s) 107, 238, 289, 460, 499, 538, 571
FaeI CATG 3 cut(s) 92, 260, 580
FaiI YATR 5 cut(s) 90, 195, 200, 258, 578
FatI CATG 3 cut(s) 88, 256, 576
FokI GGATG 2 cut(s) 67, 219
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 4 cut(s) 171, 585, 606, 618
HgaI GACGC 2 cut(s) 74, 537
HhaI GCGC 1 cut(s) 284
Hin1II CATG 3 cut(s) 92, 260, 580
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HinfI GANTC 2 cut(s) 149, 609
Hpy166II GTNNAC 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 2 cut(s) 41, 217
HpyF10VI GCNNNNNNNGC 7 cut(s) 113, 396, 417, 519, 528, 573, 582
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 3 cut(s) 92, 260, 580
HspAI GCGC 1 cut(s) 282
Lsp1109I GCAGC 4 cut(s) 80, 170, 276, 444
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 26
MboII GAAGA 1 cut(s) 48
MluCI AATT 3 cut(s) 5, 165, 594
MluI ACGCGT 1 cut(s) 520
MlyI GAGTC 1 cut(s) 618
MmeI TCCRAC 9 cut(s) 277, 319, 340, 361, 382, 403, 427, 448, 505
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 71
MvaI CCWGG 7 cut(s) 109, 240, 291, 462, 501, 540, 573
MvnI CGCG 2 cut(s) 522, 531
MwoI GCNNNNNNNGC 7 cut(s) 113, 396, 417, 519, 528, 573, 582
NciI CCSGG 9 cut(s) 312, 333, 354, 375, 396, 417, 441, 480, 582
NlaIII CATG 3 cut(s) 92, 260, 580
NspI RCATGY 1 cut(s) 580
OliI CACNNNNGTG 1 cut(s) 222
PaeI GCATGC 1 cut(s) 580
PfeI GAWTC 1 cut(s) 149
PflMI CCANNNNNTGG 5 cut(s) 296, 467, 506, 524, 545
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 7 cut(s) 107, 238, 289, 460, 499, 538, 571
PspGI CCWGG 7 cut(s) 107, 238, 289, 460, 499, 538, 571
PspPI GGNCC 1 cut(s) 236
PspPPI RGGWCCY 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 222
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 618
SetI ASST 4 cut(s) 241, 277, 295, 466
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 222
SphI GCATGC 1 cut(s) 580
Sse9I AATT 3 cut(s) 5, 165, 594
SspMI CTAG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 134, 162
TasI AATT 3 cut(s) 5, 165, 594
TauI GCSGC 7 cut(s) 74, 306, 327, 348, 390, 513, 567
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 2 cut(s) 224, 250
TseI GCWGC 4 cut(s) 68, 183, 264, 432
TspDTI ATGAA 2 cut(s) 7, 17
TspGWI ACGGA 1 cut(s) 602
TspRI CASTG 2 cut(s) 224, 250
Van91I CCANNNNNTGG 5 cut(s) 296, 467, 506, 524, 545
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 5
XceI RCATGY 1 cut(s) 580
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.