Rroxscaffold_1G00029540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010587
Physical Location & Seq
Reverse (-)
38152614 .. 38153354
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029540.1

Sequence Viewer

Length: 618 bp
ATGAAATTCAAGGGTTTCATTTTGCTAGGGCTTCTGTTTGCAGTAGTTCTCATCTCTTCCATTGACGCAGCGGCTGAGACATCCAAACATGAGAATAAAGGTGGAAGCCAGGGTAGCCCCAAAAGAAAAAAATCGAGCCAAGTAGAGGATTCAAAGCCAGTCGAAATTGGCCGATGCGGGTGCTGCTGTCGTCATAATATGTGGGGATGCGGTTTGCACTGTTGTGATGGTAGAGGACCTGGCACTGGCTGTCCACCTGGAGGCAGCACTACAGGTGTTGGCGCTATTCCAGGTATTGGAGGCATTCCGGGAGTTGGAGGCGGCATTCCGGGCGTTGGAGGAGGCATTCCGGGAGTTGGAGGCGGCATTCCGGGCGTTGGAGGCGGCATTCCGGGCGTTGGAGGCGGCATTCCGGGCGTTGGAGGAGGCATTCCGGGCGTTGGAGGAGGTGTTGGAGGCATTCCGGGAGTTGGCGGTGGCGTTCCAGGGATTGGCGGCATTCCAGGGGTTGGACGCAGTGTTCCAGGGGTTGGTGGAGGAATAGGAGGCGGCATTCCAGGCATGCCCGGCCGTGGAGGAATTGGCGGCGGCGGTCGAGTCGGTGGGCGAGGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

18.59

Weight (kDa)

9.5

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 4 cut(s) 296, 491, 509, 530
AcoI YGGCCR 2 cut(s) 169, 568
AcsI RAATTY 1 cut(s) 5
AgsI TTSAA 2 cut(s) 10, 153
AjnI CCWGG 8 cut(s) 108, 238, 256, 289, 484, 502, 523, 556
AleI CACNNNNGTG 1 cut(s) 222
AloI GAACNNNNNNTCC 2 cut(s) 504, 536
Alw26I GTCTC 1 cut(s) 71
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 2 cut(s) 169, 568
ApeKI GCWGC 3 cut(s) 68, 183, 264
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 9 cut(s) 309, 330, 351, 372, 393, 414, 435, 465, 567
AvaII GGWCC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 80, 170, 276
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 555
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 8 cut(s) 110, 240, 258, 291, 486, 504, 525, 558
BcnI CCSGG 9 cut(s) 309, 330, 351, 372, 393, 414, 435, 465, 567
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmsI GCATC 2 cut(s) 164, 197
BpmI CTGGAG 1 cut(s) 279
BpuMI CCSGG 9 cut(s) 309, 330, 351, 372, 393, 414, 435, 465, 567
BsaJI CCNNGG 5 cut(s) 109, 485, 503, 524, 571
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bse1I ACTGG 2 cut(s) 158, 250
BseBI CCWGG 8 cut(s) 110, 240, 258, 291, 486, 504, 525, 558
BseDI CCNNGG 5 cut(s) 109, 485, 503, 524, 571
BseGI GGATG 2 cut(s) 80, 212
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 158, 250
BseRI GAGGAG 3 cut(s) 354, 438, 459
BseX3I CGGCCG 1 cut(s) 568
BseXI GCAGC 3 cut(s) 80, 170, 276
Bsh1285I CGRYCG 2 cut(s) 571, 595
BshFI GGCC 2 cut(s) 171, 570
BsiEI CGRYCG 2 cut(s) 571, 595
BsiSI CCGG 9 cut(s) 308, 329, 350, 371, 392, 413, 434, 464, 567
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 171, 570
BspANI GGCC 2 cut(s) 171, 570
BspCNI CTCAG 1 cut(s) 67
BsrI ACTGG 2 cut(s) 158, 250
BssECI CCNNGG 5 cut(s) 109, 485, 503, 524, 571
Bst2UI CCWGG 8 cut(s) 110, 240, 258, 291, 486, 504, 525, 558
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 563
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 571
BstF5I GGATG 2 cut(s) 80, 212
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstMAI GTCTC 1 cut(s) 71
BstMCI CGRYCG 2 cut(s) 571, 595
BstNI CCWGG 8 cut(s) 110, 240, 258, 291, 486, 504, 525, 558
BstNSI RCATGY 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 3 cut(s) 80, 170, 276
BstZI CGGCCG 1 cut(s) 568
BsuRI GGCC 2 cut(s) 171, 570
BtgI CCRYGG 1 cut(s) 571
BtsCI GGATG 2 cut(s) 80, 212
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 3 cut(s) 217, 243, 523
Cac8I GCNNGC 1 cut(s) 563
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 236
CseI GACGC 2 cut(s) 74, 522
CviAII CATG 2 cut(s) 89, 562
CviJI RGCY 9 cut(s) 31, 74, 108, 117, 138, 157, 171, 249, 570
CviKI_1 RGCY 9 cut(s) 31, 74, 108, 117, 138, 157, 171, 249, 570
DdeI CTNAG 1 cut(s) 75
EaeI YGGCCR 2 cut(s) 169, 568
EagI CGGCCG 1 cut(s) 568
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
EclXI CGGCCG 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 236
Eco52I CGGCCG 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 8 cut(s) 108, 238, 256, 289, 484, 502, 523, 556
FaeI CATG 2 cut(s) 92, 565
FaiI YATR 4 cut(s) 90, 195, 200, 563
FatI CATG 2 cut(s) 88, 561
FauI CCCGC 1 cut(s) 170
FokI GGATG 2 cut(s) 67, 219
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 283
GsuI CTGGAG 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 2 cut(s) 171, 570
HapII CCGG 9 cut(s) 308, 329, 350, 371, 392, 413, 434, 464, 567
HgaI GACGC 2 cut(s) 74, 522
HhaI GCGC 1 cut(s) 284
Hin1II CATG 2 cut(s) 92, 565
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HinfI GANTC 2 cut(s) 149, 597
HpaII CCGG 9 cut(s) 308, 329, 350, 371, 392, 413, 434, 464, 567
Hpy166II GTNNAC 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 2 cut(s) 41, 217
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 2 cut(s) 92, 565
HspAI GCGC 1 cut(s) 282
Lsp1109I GCAGC 3 cut(s) 80, 170, 276
LweI GCATC 2 cut(s) 164, 197
MaeI CTAG 1 cut(s) 26
MboII GAAGA 1 cut(s) 48
MluCI AATT 3 cut(s) 5, 165, 579
MlyI GAGTC 1 cut(s) 606
MmeI TCCRAC 9 cut(s) 295, 316, 337, 358, 379, 400, 421, 433, 490
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 9 cut(s) 308, 329, 350, 371, 392, 413, 434, 464, 567
MvaI CCWGG 8 cut(s) 110, 240, 258, 291, 486, 504, 525, 558
NciI CCSGG 9 cut(s) 309, 330, 351, 372, 393, 414, 435, 465, 567
NlaIII CATG 2 cut(s) 92, 565
NspI RCATGY 1 cut(s) 565
OliI CACNNNNGTG 1 cut(s) 222
PaeI GCATGC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 149
PflMI CCANNNNNTGG 4 cut(s) 296, 491, 509, 530
PfoI TCCNGGA 3 cut(s) 307, 349, 463
PleI GAGTC 1 cut(s) 605
PpsI GAGTC 1 cut(s) 605
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 8 cut(s) 108, 238, 256, 289, 484, 502, 523, 556
PspGI CCWGG 8 cut(s) 108, 238, 256, 289, 484, 502, 523, 556
PspPI GGNCC 1 cut(s) 236
PspPPI RGGWCCY 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 222
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 606
SetI ASST 6 cut(s) 103, 241, 259, 277, 295, 451
SfaNI GCATC 2 cut(s) 164, 197
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 222
SphI GCATGC 1 cut(s) 565
Sse9I AATT 3 cut(s) 5, 165, 579
SspMI CTAG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 3 cut(s) 134, 162, 595
TasI AATT 3 cut(s) 5, 165, 579
TauI GCSGC 9 cut(s) 74, 324, 366, 387, 408, 498, 552, 588, 591
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 3 cut(s) 224, 250, 523
TseI GCWGC 3 cut(s) 68, 183, 264
TspDTI ATGAA 2 cut(s) 7, 17
TspRI CASTG 3 cut(s) 224, 250, 523
Van91I CCANNNNNTGG 4 cut(s) 296, 491, 509, 530
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 5
XceI RCATGY 1 cut(s) 565
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.