Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010587

Physical Location & Seq

Genomic Coordinates Reverse (-)

21322656 .. 21323556

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G205700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ACCTTAAAACTAGCAATCTTTCTTGTGAGATTTTTTACTAGCATAACATTTCGACAAGTCATGACTTTCAAAGCTTTCATTTTACTGGGCCTTCTGTTTGGCTCTGTTGTTCTCATCTCTTCCACTGTCGCAGATGAGACATCCGAAGATGAGAAGAAAGTGGATGAGGCGCAGGAAGCGAACCCTGTAGAGGACGCAAGACAATATTGCGGGTGTTGCATTCGTTTTGGCATATATAGATGCGGCCTACGATGTTGTCGGCGACCTGAACCTGAGGATCAGCCTCAAGAAGTAGGCGACAGCCTTGAAACGAACCAGCCTGACGGATATGGATATGGAGGGGGTGGCTACAAAGGAGGCCGTGGTGGGAGCTATGGAGGCGGGGGCTATGGAGGAGGAGGCCGTGGAGGCGGCGGCTATGGAGCAGGAGGCCATGGAGGCGGGGGCCGTGGAAGCGGCGGCTATGGAGGAGGTGGCCGTGGTGGATATGGTGGTGGCGGCGGTGGCGGAAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

17.49

Weight (kDa)

7.48

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41601 FvH4_6g41604
prunus_persica	Prupe.3G205600_v2.0.a1 Prupe.3G205700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157361
rosa_laevigata	RLG00000020978 RLG00000020980 RLG00000020981
rosa_multiflora	Rmu_sc0010103.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029540 Rroxscaffold_2G00092280 Rroxscaffold_2G00092300
rosa_rugosa	Rorug02G0459700 Rorug02G0459900
rosa_samantha	Rh2AG524600 Rh2BG539000 Rh2CG509400 Rh2CG509600 Rh2DG547900
rosa_wichuraiana	Rw2G043430 Rw2G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	70, 308
AluBI	AGCT	2 cut(s)	74, 372
AluI	AGCT	2 cut(s)	74, 372
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	285
AoxI	GGCC	7 cut(s)	88, 244, 358, 400, 430, 445, 475
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	88, 445
AxyI	CCTNAGG	1 cut(s)	273
BceAI	ACGGC	4 cut(s)	345, 387, 432, 462
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	11, 39
BfmI	CTRYAG	1 cut(s)	186
BglI	GCCNNNNNGGC	2 cut(s)	408, 438
BisI	GCNGC	6 cut(s)	244, 412, 415, 457, 460, 499
BlsI	GCNGC	6 cut(s)	245, 413, 416, 458, 461, 500
BmgT120I	GGNCC	2 cut(s)	88, 445
BmiI	GGNNCC	1 cut(s)	446
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	270
BsaJI	CCNNGG	5 cut(s)	361, 403, 433, 448, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	90
Bse21I	CCTNAGG	1 cut(s)	273
BseDI	CCNNGG	5 cut(s)	361, 403, 433, 448, 478
BseGI	GGATG	2 cut(s)	140, 169
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	3 cut(s)	408, 411, 483
BshFI	GGCC	7 cut(s)	90, 246, 360, 402, 432, 447, 477
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	7 cut(s)	90, 246, 360, 402, 432, 447, 477
Bsp143I	GATC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	433
BspANI	GGCC	7 cut(s)	90, 246, 360, 402, 432, 447, 477
BspCNI	CTCAG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	446
BspPI	GGATC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	5 cut(s)	361, 403, 433, 448, 478
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	5 cut(s)	361, 403, 433, 448, 478
BstF5I	GGATG	2 cut(s)	140, 169
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	7 cut(s)	176, 216, 378, 408, 438, 453, 504
BstSFI	CTRYAG	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	7 cut(s)	90, 246, 360, 402, 432, 447, 477
BtgI	CCRYGG	5 cut(s)	361, 403, 433, 448, 478
BtsCI	GGATG	2 cut(s)	140, 169
BtsIMutI	CAGTG	1 cut(s)	123
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	88, 445
CseI	GACGC	1 cut(s)	203
CviAII	CATG	2 cut(s)	61, 434
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	433
Eco81I	CCTNAGG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	2 cut(s)	64, 437
FatI	CATG	2 cut(s)	60, 433
FauI	CCCGC	3 cut(s)	203, 374, 434
Fnu4HI	GCNGC	6 cut(s)	244, 412, 415, 457, 460, 499
FokI	GGATG	2 cut(s)	127, 176
Fsp4HI	GCNGC	6 cut(s)	244, 412, 415, 457, 460, 499
FspBI	CTAG	2 cut(s)	11, 39
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	6 cut(s)	244, 412, 415, 457, 460, 499
HaeIII	GGCC	7 cut(s)	90, 246, 360, 402, 432, 447, 477
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	64, 437
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	61, 287
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	7 cut(s)	176, 216, 378, 408, 438, 453, 504
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	64, 437
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	369, 422
LpnPI	CCDG	8 cut(s)	71, 158, 198, 279, 285, 329, 333, 411
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	11, 39
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	111, 158, 166
MseI	TTAA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	219
MwoI	GCNNNNNNNGC	7 cut(s)	176, 216, 378, 408, 438, 453, 504
NcoI	CCATGG	1 cut(s)	433
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	64, 437
NlaIV	GGNNCC	1 cut(s)	446
PagI	TCATGA	1 cut(s)	60
PctI	GAATGC	1 cut(s)	219
PkrI	GCNGC	6 cut(s)	245, 413, 416, 458, 461, 500
PspN4I	GGNNCC	1 cut(s)	446
PspPI	GGNCC	2 cut(s)	88, 445
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	6 cut(s)	244, 412, 415, 457, 460, 499
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	2 cut(s)	88, 445
SetI	ASST	5 cut(s)	76, 268, 274, 374, 475
SfaNI	GCATC	1 cut(s)	230
SfcI	CTRYAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
SspI	AATATT	1 cut(s)	206
SspMI	CTAG	2 cut(s)	11, 39
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	52
TauI	GCSGC	6 cut(s)	246, 414, 417, 459, 462, 501
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	130
XspI	CTAG	2 cut(s)	11, 39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.