Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010587

Physical Location & Seq

Genomic Coordinates Reverse (-)

77645820 .. 77675636

Gene Structure 29817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG547900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGATTATTCAGGTCGCATTGAGGGAGCAGATACAACATGGCTTCTGTTTGGGCTTGTTCTTATTTCTTCCATTGTCACAGCTGATCAGAAATCCAAATATGAGGATACAGCTGAGGCGACAAAGGAAACGAATCCAGAGCAAGTAGATGGCACTAAGAAAGGTGGTGGAGGATATTGCGGCCGCTGCTGCTGGCTTCATGGCTACCATTATTGTGGTAATCAGTGCTGTTGGCCGGAGAAAAAAGAATCAAAAGTGGTAAACGAAGCCGCTCCTTATGAAGCTAACCCTGATGGATATGGCGGAGGCTCGGGAGGAGGCGGTCGTGAAGGTGGATGGGGAGGAAGTGTGGAAGCCAGGGTAGCCCCAAAAGAAAAGAAATCGAGCCAAGTAGAGGATTCAAAGCCGGTCGAAATTGGCCGATGTGGGTGCTGCTGTCGTCATAATATGTGGGGATGCGGTTTGCACTGTTGTGATGGTAGAGGACCTGGCACTGGCTGTCCACATGGAGGCAGCACTACAGGTGTTGGCGCTATTCCAGGTGTTGGAGGCGGCATTCCGGGTTTTGGAGGCGGCATTCCGGGTGTTGGAGGCGGCATTCCGGGGGTTGGAGGAGGCATTCCGGGGGTTGGAGGCGGCATTCCGGGCGTTGGAGGAGGCATTCCGGGGGTTGGAGGCGGCATTCCGGGCGTTGGAGGAGGCATTCCCGGCGTTGGAGGAGGCAGCATTCCGGGTGTTGGAGGAGGCGTTCCAGGTGTTGGAGGCATTCCGGGGGTTGGCGGTGGCGTTCCAGGGAATGGCGGCATTCCACGCGTTGGACGCGGTGTTCCAGGGGTTGGTGGAGGAATAGGAGGCGGCATTCCAGGCATGCCCGGCCGTGGAGGAATTGGGGGTGGCCGAGTCCGTGGCCGAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

29.09

Weight (kDa)

8.17

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41601 FvH4_6g41604
prunus_persica	Prupe.3G205600_v2.0.a1 Prupe.3G205700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157361
rosa_laevigata	RLG00000020978 RLG00000020980 RLG00000020981
rosa_multiflora	Rmu_sc0010103.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029540 Rroxscaffold_2G00092280 Rroxscaffold_2G00092300
rosa_rugosa	Rorug02G0459700 Rorug02G0459900
rosa_samantha	Rh2AG524600 Rh2BG539000 Rh2CG509400 Rh2CG509600 Rh2DG547900
rosa_wichuraiana	Rw2G043430 Rw2G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	5 cut(s)	545, 758, 797, 815, 836
AccBSI	CCGCTC	1 cut(s)	272
AccII	CGCG	2 cut(s)	813, 822
AcoI	YGGCCR	6 cut(s)	181, 233, 418, 874, 895, 907
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	1 cut(s)	402
AjnI	CCWGG	7 cut(s)	356, 487, 538, 751, 790, 829, 862
AleI	CACNNNNGTG	1 cut(s)	471
AloI	GAACNNNNNNTCC	4 cut(s)	732, 764, 810, 842
AluBI	AGCT	3 cut(s)	83, 113, 284
AluI	AGCT	3 cut(s)	83, 113, 284
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	6 cut(s)	181, 233, 418, 874, 895, 907
ApeKI	GCWGC	5 cut(s)	186, 189, 432, 513, 723
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	485
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	5 cut(s)	173, 176, 419, 525, 735
BccI	CCATC	4 cut(s)	143, 287, 330, 470
BceAI	ACGGC	1 cut(s)	861
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciT130I	CCWGG	7 cut(s)	358, 489, 540, 753, 792, 831, 864
BciVI	GTATCC	1 cut(s)	100
BclI	TGATCA	1 cut(s)	85
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	534
BfuI	GTATCC	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	485
BmsI	GCATC	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	114
BsaXI	ACNNNNNCTCC	4 cut(s)	333, 363, 732, 762
Bse118I	RCCGGY	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	499
BseBI	CCWGG	7 cut(s)	358, 489, 540, 753, 792, 831, 864
BseGI	GGATG	2 cut(s)	341, 461
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	6 cut(s)	330, 627, 669, 711, 732, 756
BseX3I	CGGCCG	2 cut(s)	181, 874
BseXI	GCAGC	5 cut(s)	173, 176, 419, 525, 735
Bsh1236I	CGCG	2 cut(s)	813, 822
Bsh1285I	CGRYCG	4 cut(s)	184, 325, 411, 877
BshFI	GGCC	6 cut(s)	183, 235, 420, 876, 897, 909
BsiEI	CGRYCG	4 cut(s)	184, 325, 411, 877
BsiHKCI	CYCGRG	1 cut(s)	310
BsnI	GGCC	6 cut(s)	183, 235, 420, 876, 897, 909
BsoBI	CYCGRG	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	6 cut(s)	183, 235, 420, 876, 897, 909
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	2 cut(s)	813, 822
BsrBI	CCGCTC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	406
BsrI	ACTGG	1 cut(s)	499
BssAI	RCCGGY	1 cut(s)	406
BssMI	GATC	1 cut(s)	85
Bst2UI	CCWGG	7 cut(s)	358, 489, 540, 753, 792, 831, 864
Bst4CI	ACNGT	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	194, 869
BstDEI	CTNAG	2 cut(s)	114, 156
BstDSI	CCRYGG	2 cut(s)	877, 904
BstF5I	GGATG	2 cut(s)	341, 461
BstFNI	CGCG	2 cut(s)	813, 822
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMCI	CGRYCG	4 cut(s)	184, 325, 411, 877
BstNI	CCWGG	7 cut(s)	358, 489, 540, 753, 792, 831, 864
BstNSI	RCATGY	1 cut(s)	871
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	2 cut(s)	813, 822
BstV1I	GCAGC	5 cut(s)	173, 176, 419, 525, 735
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstZI	CGGCCG	2 cut(s)	181, 874
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	6 cut(s)	183, 235, 420, 876, 897, 909
BtgI	CCRYGG	2 cut(s)	877, 904
BtsCI	GGATG	2 cut(s)	341, 461
BtsIMutI	CAGTG	3 cut(s)	230, 466, 492
Cac8I	GCNNGC	2 cut(s)	194, 869
CciNI	GCGGCCGC	1 cut(s)	181
CfoI	GCGC	1 cut(s)	533
Cfr10I	RCCGGY	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	485
CseI	GACGC	1 cut(s)	828
CviAII	CATG	4 cut(s)	39, 200, 506, 868
DdeI	CTNAG	2 cut(s)	114, 156
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
EaeI	YGGCCR	6 cut(s)	181, 233, 418, 874, 895, 907
EagI	CGGCCG	2 cut(s)	181, 874
EciI	GGCGGA	1 cut(s)	318
EclXI	CGGCCG	2 cut(s)	181, 874
Eco47I	GGWCC	1 cut(s)	485
Eco52I	CGGCCG	2 cut(s)	181, 874
Eco88I	CYCGRG	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	485
EcoRII	CCWGG	7 cut(s)	356, 487, 538, 751, 790, 829, 862
FaeI	CATG	4 cut(s)	42, 203, 509, 871
FaiI	YATR	9 cut(s)	40, 102, 201, 279, 300, 444, 449, 507, 869
FatI	CATG	4 cut(s)	38, 199, 505, 867
FbaI	TGATCA	1 cut(s)	85
FokI	GGATG	2 cut(s)	348, 468
GlaI	GCGC	1 cut(s)	532
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	6 cut(s)	183, 235, 420, 876, 897, 909
HgaI	GACGC	1 cut(s)	828
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	4 cut(s)	42, 203, 509, 871
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HinfI	GANTC	4 cut(s)	133, 248, 398, 900
Hpy166II	GTNNAC	2 cut(s)	262, 503
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	3 cut(s)	137, 312, 326
Hpy8I	GTNNAC	2 cut(s)	262, 503
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	1 cut(s)	466
HpyF3I	CTNAG	2 cut(s)	114, 156
Hsp92II	CATG	4 cut(s)	42, 203, 509, 871
HspAI	GCGC	1 cut(s)	531
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	26, 277
Lsp1109I	GCAGC	5 cut(s)	173, 176, 419, 525, 735
LweI	GCATC	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	87
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	60
MluCI	AATT	2 cut(s)	414, 885
MluI	ACGCGT	1 cut(s)	811
MlyI	GAGTC	1 cut(s)	909
MslI	CAYNNNNRTG	2 cut(s)	213, 471
MspA1I	CMGCKG	3 cut(s)	83, 113, 186
MvaI	CCWGG	7 cut(s)	358, 489, 540, 753, 792, 831, 864
MvnI	CGCG	2 cut(s)	813, 822
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	4 cut(s)	42, 203, 509, 871
NmuCI	GTSAC	1 cut(s)	76
NotI	GCGGCCGC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	871
OliI	CACNNNNGTG	1 cut(s)	471
PaeI	GCATGC	1 cut(s)	871
PfeI	GAWTC	3 cut(s)	133, 248, 398
PflMI	CCANNNNNTGG	5 cut(s)	545, 758, 797, 815, 836
PleI	GAGTC	1 cut(s)	908
PpsI	GAGTC	1 cut(s)	908
PpuMI	RGGWCCY	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	485
Psp6I	CCWGG	7 cut(s)	356, 487, 538, 751, 790, 829, 862
PspGI	CCWGG	7 cut(s)	356, 487, 538, 751, 790, 829, 862
PspPI	GGNCC	1 cut(s)	485
PspPPI	RGGWCCY	1 cut(s)	485
PvuII	CAGCTG	2 cut(s)	83, 113
RseI	CAYNNNNRTG	2 cut(s)	213, 471
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	1 cut(s)	909
SfaNI	GCATC	1 cut(s)	446
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	2 cut(s)	213, 471
SphI	GCATGC	1 cut(s)	871
Sse9I	AATT	2 cut(s)	414, 885
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	2 cut(s)	383, 411
TasI	AATT	2 cut(s)	414, 885
TfiI	GAWTC	3 cut(s)	133, 248, 398
TscAI	CASTG	3 cut(s)	230, 473, 499
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	5 cut(s)	186, 189, 432, 513, 723
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	188, 294
TspGWI	ACGGA	1 cut(s)	893
TspRI	CASTG	3 cut(s)	230, 473, 499
Van91I	CCANNNNNTGG	5 cut(s)	545, 758, 797, 815, 836
VpaK11BI	GGWCC	1 cut(s)	485
XceI	RCATGY	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.