Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010587

Physical Location & Seq

Genomic Coordinates Reverse (-)

69899675 .. 69900463

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAGAATTTCAAGGCTTTCAATTTGCTAGGGCTTCTGTTTGCCCTTTTTCTCATCTCTTCCATTGTCACAGCTGATGAGAAATCCAAAGAGGAGAATAAAGCTGTAGTGGATGGGGCAACAAAGGAGACGAATCCGGTGCCAGTTGATGACGTAAAACAAGGTCGAGGGGGAGGATATTGCGGGCGCTGCTGCTGGAAACATGGCTACCATTATTGTGGTAGTCAGTGTTGTTGGCCTGAGAAAGAAGAAACAGAAGCTGTAGTCGAGGCCACCGCTGATGCCAACCCTGATGGATATGGCTGGGGAGGCGGACGAGGTGGCGGTGGCTGGGGAGGCGGAAGAGGTGGCGGTGGCTGGGGAGGTGGAAGAGGTGGCGGTGGCGGACGAGGAGGAGGTGGTGGCTGGGGAGGAGGAGGCAGTGCAGCAGCTTATGAAGCCAACCCTGATGGATATGGCTGGGGAGGGGGACGAGGAGGCGGAAGAGGTGGCGGTGGCTGGGGAGGTGGAAGAGGTGGCGGTGGCGGACGAGGAGGAGGTGGTGGCTGGGGAGGAGGAGGCGGACGAGGTGGAGGTGGCTGGGGAGGCGGACGAGGCGGAGGTGGTTGGGGAGGGGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

19.79

Weight (kDa)

8.76

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41601 FvH4_6g41604
prunus_persica	Prupe.3G205600_v2.0.a1 Prupe.3G205700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157361
rosa_laevigata	RLG00000020978 RLG00000020980 RLG00000020981
rosa_multiflora	Rmu_sc0010103.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029540 Rroxscaffold_2G00092280 Rroxscaffold_2G00092300
rosa_rugosa	Rorug02G0459700 Rorug02G0459900
rosa_samantha	Rh2AG524600 Rh2BG539000 Rh2CG509400 Rh2CG509600 Rh2DG547900
rosa_wichuraiana	Rw2G043430 Rw2G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	7
AgsI	TTSAA	2 cut(s)	13, 22
AluBI	AGCT	4 cut(s)	74, 104, 260, 431
AluI	AGCT	4 cut(s)	74, 104, 260, 431
Alw26I	GTCTC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	236, 270
ApeKI	GCWGC	4 cut(s)	189, 192, 425, 428
ApoI	RAATTY	1 cut(s)	7
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	139
BbvI	GCAGC	4 cut(s)	176, 179, 437, 440
BccI	CCATC	3 cut(s)	107, 287, 443
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	2 cut(s)	105, 261
BfoI	RGCGCY	1 cut(s)	190
BisI	GCNGC	4 cut(s)	190, 193, 426, 429
BlsI	GCNGC	4 cut(s)	191, 194, 427, 430
BmiI	GGNNCC	1 cut(s)	141
BmsI	GCATC	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	4 cut(s)	176, 179, 437, 440
BseYI	CCCAGC	8 cut(s)	303, 330, 357, 405, 459, 498, 546, 579
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	238, 272
BshNI	GGYRCC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	483
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	238, 272
BspANI	GGCC	2 cut(s)	238, 272
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	143
Bst6I	CTCTTC	5 cut(s)	64, 337, 364, 478, 505
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	6 cut(s)	189, 309, 336, 437, 585, 594
BstSFI	CTRYAG	2 cut(s)	105, 261
BstV1I	GCAGC	4 cut(s)	176, 179, 437, 440
BstXI	CCANNNNNNTGG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	238, 272
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	2 cut(s)	233, 427
Cac8I	GCNNGC	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	189
CviAII	CATG	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	240
Eam1104I	CTCTTC	5 cut(s)	64, 337, 364, 478, 505
EarI	CTCTTC	5 cut(s)	64, 337, 364, 478, 505
EciI	GGCGGA	8 cut(s)	327, 354, 399, 495, 540, 576, 603, 612
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	204, 300, 435, 456
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	4 cut(s)	190, 193, 426, 429
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	4 cut(s)	190, 193, 426, 429
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	4 cut(s)	190, 193, 426, 429
GsaI	CCCAGC	8 cut(s)	307, 334, 361, 409, 463, 502, 550, 583
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	238, 272
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	6 cut(s)	189, 309, 336, 437, 585, 594
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	187
Lsp1109I	GCAGC	4 cut(s)	176, 179, 437, 440
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	67, 617
MboII	GAAGA	7 cut(s)	16, 51, 260, 354, 381, 495, 522
MluCI	AATT	2 cut(s)	7, 22
MroXI	GAANNNNTTC	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	2 cut(s)	74, 278
MspI	CCGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	6 cut(s)	189, 309, 336, 437, 585, 594
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	4 cut(s)	191, 194, 427, 430
PspFI	CCCAGC	8 cut(s)	303, 330, 357, 405, 459, 498, 546, 579
PspN4I	GGNNCC	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	4 cut(s)	190, 193, 426, 429
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	2 cut(s)	105, 261
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	7, 22
SspMI	CTAG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	166, 267
TasI	AATT	2 cut(s)	7, 22
TfiI	GAWTC	1 cut(s)	133
TscAI	CASTG	2 cut(s)	233, 427
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	4 cut(s)	189, 192, 425, 428
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	17, 450
TspRI	CASTG	2 cut(s)	233, 427
XapI	RAATTY	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.