Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010587

Physical Location & Seq

Genomic Coordinates Reverse (-)

13827667 .. 13829108

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAAATTCAAGGGTTTCATTTTGCTAGGGCTTCTGTTTGCAGTAGTTCTCATCTCTTCCATTGACGCAGCGGCTGAGACATCCAAACATGAGAATAAAGTGGAAGCCAGGATAGCCCCAAAAGAAAAAAAATCGAGCCAAGTAGAGGATTCAAAGCCAGTCGAAATTGGCCGATGCGGGTGCTGCTGTCGTCATAATATGTGGGGATGCGGTTTGCACTGTTGTGATGGTAGAGGACCTGGCACTGGCTGTCCACCTGGAGGCAGCACTACAGGTGTTGGCGCTATTCCAGGCGTTGGAGGCGGCATTCCGGGCGTTGGAGGAGGCATTCCGGGCGTTGGAGGCGGCATTCCGGGCGTTGGAGGAGGCATTCCGGGCGTTGGAGGAGGCATTCCTGGCGTTGGAGGAGGCATTCCGGGCGTTGGAGGAGGCGGCATACCGGGTGTTGGAGGAGGCGTTCCAGGTGTTGGAGGCATTCCGGGGGTTGGCGGTGGCGTTCCAGGGATTGGCTGCATTCCAGGCGTTGGACGCGGTGTTCCAGGGGTTGGTGGAGGAATAGGAGGCGGCATTCCAGGCATGCCCGGCCGTGGAGGAATTGGCGGCGGCGGTCGAGTCGGTGGGCGAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

19.1

Weight (kDa)

9.11

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41601 FvH4_6g41604
prunus_persica	Prupe.3G205600_v2.0.a1 Prupe.3G205700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157361
rosa_laevigata	RLG00000020978 RLG00000020980 RLG00000020981
rosa_multiflora	Rmu_sc0010103.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029540 Rroxscaffold_2G00092280 Rroxscaffold_2G00092300
rosa_rugosa	Rorug02G0459700 Rorug02G0459900
rosa_samantha	Rh2AG524600 Rh2BG539000 Rh2CG509400 Rh2CG509600 Rh2DG547900
rosa_wichuraiana	Rw2G043430 Rw2G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	5 cut(s)	296, 467, 506, 524, 545
AccII	CGCG	1 cut(s)	531
AcoI	YGGCCR	2 cut(s)	169, 583
AcsI	RAATTY	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	10, 153
AleI	CACNNNNGTG	1 cut(s)	222
AloI	GAACNNNNNNTCC	4 cut(s)	441, 473, 519, 551
Alw26I	GTCTC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	169, 583
ApeKI	GCWGC	4 cut(s)	68, 183, 264, 510
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	8 cut(s)	312, 333, 354, 375, 417, 441, 480, 582
AvaII	GGWCC	1 cut(s)	236
BbvI	GCAGC	4 cut(s)	80, 170, 276, 497
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	570
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BcnI	CCSGG	8 cut(s)	312, 333, 354, 375, 417, 441, 480, 582
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmsI	GCATC	2 cut(s)	164, 197
BpmI	CTGGAG	1 cut(s)	279
BpuMI	CCSGG	8 cut(s)	312, 333, 354, 375, 417, 441, 480, 582
BsaJI	CCNNGG	4 cut(s)	479, 500, 539, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bse1I	ACTGG	2 cut(s)	158, 250
BseDI	CCNNGG	4 cut(s)	479, 500, 539, 586
BseGI	GGATG	2 cut(s)	80, 212
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	158, 250
BseRI	GAGGAG	6 cut(s)	336, 378, 399, 420, 441, 465
BseX3I	CGGCCG	1 cut(s)	583
BseXI	GCAGC	4 cut(s)	80, 170, 276, 497
Bsh1236I	CGCG	1 cut(s)	531
Bsh1285I	CGRYCG	2 cut(s)	586, 610
BshFI	GGCC	2 cut(s)	171, 585
BsiEI	CGRYCG	2 cut(s)	586, 610
BsiSI	CCGG	8 cut(s)	311, 332, 353, 374, 416, 440, 479, 582
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	9 cut(s)	306, 327, 348, 369, 390, 411, 474, 513, 567
BsnI	GGCC	2 cut(s)	171, 585
BspANI	GGCC	2 cut(s)	171, 585
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	158, 250
BssECI	CCNNGG	4 cut(s)	479, 500, 539, 586
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	578
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	586
BstF5I	GGATG	2 cut(s)	80, 212
BstFNI	CGCG	1 cut(s)	531
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	284
BstMAI	GTCTC	1 cut(s)	71
BstMCI	CGRYCG	2 cut(s)	586, 610
BstNSI	RCATGY	1 cut(s)	580
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	4 cut(s)	80, 170, 276, 497
BstZI	CGGCCG	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	171, 585
BtgI	CCRYGG	1 cut(s)	586
BtsCI	GGATG	2 cut(s)	80, 212
BtsIMutI	CAGTG	2 cut(s)	217, 243
Cac8I	GCNNGC	1 cut(s)	578
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	236
CseI	GACGC	2 cut(s)	74, 537
CviAII	CATG	2 cut(s)	89, 577
DdeI	CTNAG	1 cut(s)	75
EaeI	YGGCCR	2 cut(s)	169, 583
EagI	CGGCCG	1 cut(s)	583
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	236
Eco52I	CGGCCG	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	236
FaeI	CATG	2 cut(s)	92, 580
FaiI	YATR	5 cut(s)	90, 195, 200, 437, 578
FatI	CATG	2 cut(s)	88, 576
FauI	CCCGC	1 cut(s)	170
FokI	GGATG	2 cut(s)	67, 219
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	171, 585
HapII	CCGG	8 cut(s)	311, 332, 353, 374, 416, 440, 479, 582
HgaI	GACGC	2 cut(s)	74, 537
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	2 cut(s)	92, 580
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	149, 612
HpaII	CCGG	8 cut(s)	311, 332, 353, 374, 416, 440, 479, 582
Hpy166II	GTNNAC	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	41, 217, 513
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	92, 580
HspAI	GCGC	1 cut(s)	282
Lsp1109I	GCAGC	4 cut(s)	80, 170, 276, 497
LweI	GCATC	2 cut(s)	164, 197
MaeI	CTAG	1 cut(s)	26
MboII	GAAGA	1 cut(s)	48
MluCI	AATT	3 cut(s)	5, 165, 594
MlyI	GAGTC	1 cut(s)	621
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	8 cut(s)	311, 332, 353, 374, 416, 440, 479, 582
Mva1269I	GAATGC	9 cut(s)	306, 327, 348, 369, 390, 411, 474, 513, 567
MvnI	CGCG	1 cut(s)	531
NciI	CCSGG	8 cut(s)	312, 333, 354, 375, 417, 441, 480, 582
NlaIII	CATG	2 cut(s)	92, 580
NspI	RCATGY	1 cut(s)	580
OliI	CACNNNNGTG	1 cut(s)	222
PaeI	GCATGC	1 cut(s)	580
PctI	GAATGC	9 cut(s)	306, 327, 348, 369, 390, 411, 474, 513, 567
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	5 cut(s)	296, 467, 506, 524, 545
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
PpuMI	RGGWCCY	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	236
PspPPI	RGGWCCY	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	621
SetI	ASST	4 cut(s)	241, 259, 277, 466
SfaNI	GCATC	2 cut(s)	164, 197
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	222
SphI	GCATGC	1 cut(s)	580
Sse9I	AATT	3 cut(s)	5, 165, 594
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	3 cut(s)	134, 162, 610
TasI	AATT	3 cut(s)	5, 165, 594
TauI	GCSGC	7 cut(s)	74, 306, 348, 435, 567, 603, 606
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	2 cut(s)	224, 250
TseI	GCWGC	4 cut(s)	68, 183, 264, 510
TspDTI	ATGAA	2 cut(s)	7, 17
TspRI	CASTG	2 cut(s)	224, 250
Van91I	CCANNNNNTGG	5 cut(s)	296, 467, 506, 524, 545
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	580
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.