Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010587

Physical Location & Seq

Genomic Coordinates Reverse (-)

68191782 .. 68192424

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG509400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAATTCAAGGGTTTCATTTTGCTAGGGTTTCTGTTTGCAGTAGTTCTCATCTCTTCCATTGACGCAGCGGCTGAGACATCCAAACATGAGAATAAAGTGGAAGCCAGGGTAGCCCCAAAAGAAAAGAAATCGAGCCAAGTAGAGGATTCACAGCCCGTCGAAATTGGCCGATGTGGGTGCTGCTGTCGTCATAATATGTGGGGATGCGGTTTGCACTGTTGTGATGGTAGAGGACCTGGCACTGGCTGTCCATATGGAGGCAGCACTACAGGTGTTGGAGGCGGCATTCCGGGCGTTGGAGGCGGCATTCCGGGCGTTGGAGGAGGCATTCCCGGCGTTGGAGGAGGCAGCATTCCGGGTGTTGGAGGAGGCGTTCCAGGTGTTAGAGGCATTCCGGGGGTTGGCGGTGGCGTTCCAGGGAATGGCGGCATTCCAGGCGTTGGACGCGGTGTTCCAGGGGTTGGTGGAGGAATAGGAGGCGGCATTCCAGGCATGCCCGGCCGTGGAGGAATTGGCGGCGGCGGCCGAGTCCGTGGGCGAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

17.26

Weight (kDa)

9.35

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41601 FvH4_6g41604
prunus_persica	Prupe.3G205600_v2.0.a1 Prupe.3G205700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157361
rosa_laevigata	RLG00000020978 RLG00000020980 RLG00000020981
rosa_multiflora	Rmu_sc0010103.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029540 Rroxscaffold_2G00092280 Rroxscaffold_2G00092300
rosa_rugosa	Rorug02G0459700 Rorug02G0459900
rosa_samantha	Rh2AG524600 Rh2BG539000 Rh2CG509400 Rh2CG509600 Rh2DG547900
rosa_wichuraiana	Rw2G043430 Rw2G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	425, 443, 464
AccII	CGCG	1 cut(s)	450
AcoI	YGGCCR	3 cut(s)	169, 502, 526
AcsI	RAATTY	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	7 cut(s)	107, 238, 379, 418, 436, 457, 490
AleI	CACNNNNGTG	1 cut(s)	222
AloI	GAACNNNNNNTCC	4 cut(s)	360, 392, 438, 470
Alw26I	GTCTC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	3 cut(s)	169, 502, 526
ApeKI	GCWGC	4 cut(s)	68, 183, 264, 351
ApoI	RAATTY	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	6 cut(s)	294, 315, 336, 360, 399, 501
AvaII	GGWCC	1 cut(s)	236
BbvI	GCAGC	4 cut(s)	80, 170, 276, 363
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	489
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	7 cut(s)	109, 240, 381, 420, 438, 459, 492
BcnI	CCSGG	6 cut(s)	294, 315, 336, 360, 399, 501
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmsI	GCATC	1 cut(s)	197
BpuMI	CCSGG	6 cut(s)	294, 315, 336, 360, 399, 501
BsaJI	CCNNGG	6 cut(s)	108, 398, 419, 458, 505, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bse1I	ACTGG	1 cut(s)	250
BseBI	CCWGG	7 cut(s)	109, 240, 381, 420, 438, 459, 492
BseDI	CCNNGG	6 cut(s)	108, 398, 419, 458, 505, 535
BseGI	GGATG	2 cut(s)	80, 212
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	3 cut(s)	339, 360, 384
BseX3I	CGGCCG	2 cut(s)	502, 526
BseXI	GCAGC	4 cut(s)	80, 170, 276, 363
Bsh1236I	CGCG	1 cut(s)	450
Bsh1285I	CGRYCG	2 cut(s)	505, 529
BshFI	GGCC	3 cut(s)	171, 504, 528
BsiEI	CGRYCG	2 cut(s)	505, 529
BsiSI	CCGG	6 cut(s)	293, 314, 336, 359, 398, 501
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	7 cut(s)	288, 309, 330, 354, 393, 432, 486
BsnI	GGCC	3 cut(s)	171, 504, 528
BspANI	GGCC	3 cut(s)	171, 504, 528
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	6 cut(s)	108, 398, 419, 458, 505, 535
Bst2UI	CCWGG	7 cut(s)	109, 240, 381, 420, 438, 459, 492
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	2 cut(s)	505, 535
BstF5I	GGATG	2 cut(s)	80, 212
BstFNI	CGCG	1 cut(s)	450
BstMAI	GTCTC	1 cut(s)	71
BstMCI	CGRYCG	2 cut(s)	505, 529
BstNI	CCWGG	7 cut(s)	109, 240, 381, 420, 438, 459, 492
BstNSI	RCATGY	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	4 cut(s)	80, 170, 276, 363
BstZI	CGGCCG	2 cut(s)	502, 526
BsuRI	GGCC	3 cut(s)	171, 504, 528
BtgI	CCRYGG	2 cut(s)	505, 535
BtsCI	GGATG	2 cut(s)	80, 212
BtsIMutI	CAGTG	2 cut(s)	217, 243
Cac8I	GCNNGC	1 cut(s)	497
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	236
CseI	GACGC	2 cut(s)	74, 456
CviAII	CATG	2 cut(s)	89, 496
CviJI	RGCY	9 cut(s)	74, 107, 116, 138, 157, 171, 249, 504, 528
CviKI_1	RGCY	9 cut(s)	74, 107, 116, 138, 157, 171, 249, 504, 528
DdeI	CTNAG	1 cut(s)	75
EaeI	YGGCCR	3 cut(s)	169, 502, 526
EagI	CGGCCG	2 cut(s)	502, 526
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EclXI	CGGCCG	2 cut(s)	502, 526
Eco47I	GGWCC	1 cut(s)	236
Eco52I	CGGCCG	2 cut(s)	502, 526
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	7 cut(s)	107, 238, 379, 418, 436, 457, 490
FaeI	CATG	2 cut(s)	92, 499
FaiI	YATR	6 cut(s)	90, 195, 200, 256, 258, 497
FatI	CATG	2 cut(s)	88, 495
FauNDI	CATATG	1 cut(s)	256
FokI	GGATG	2 cut(s)	67, 219
FspBI	CTAG	1 cut(s)	26
HaeIII	GGCC	3 cut(s)	171, 504, 528
HapII	CCGG	6 cut(s)	293, 314, 336, 359, 398, 501
HgaI	GACGC	2 cut(s)	74, 456
Hin1II	CATG	2 cut(s)	92, 499
HinfI	GANTC	2 cut(s)	149, 531
HpaII	CCGG	6 cut(s)	293, 314, 336, 359, 398, 501
Hpy99I	CGWCG	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	41, 217
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	92, 499
Lsp1109I	GCAGC	4 cut(s)	80, 170, 276, 363
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	26
MboII	GAAGA	1 cut(s)	48
MluCI	AATT	3 cut(s)	5, 165, 513
MlyI	GAGTC	1 cut(s)	540
MmeI	TCCRAC	6 cut(s)	259, 280, 301, 322, 346, 424
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	6 cut(s)	293, 314, 336, 359, 398, 501
Mva1269I	GAATGC	7 cut(s)	288, 309, 330, 354, 393, 432, 486
MvaI	CCWGG	7 cut(s)	109, 240, 381, 420, 438, 459, 492
MvnI	CGCG	1 cut(s)	450
NciI	CCSGG	6 cut(s)	294, 315, 336, 360, 399, 501
NdeI	CATATG	1 cut(s)	256
NlaIII	CATG	2 cut(s)	92, 499
NspI	RCATGY	1 cut(s)	499
OliI	CACNNNNGTG	1 cut(s)	222
PaeI	GCATGC	1 cut(s)	499
PctI	GAATGC	7 cut(s)	288, 309, 330, 354, 393, 432, 486
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	3 cut(s)	425, 443, 464
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
PpuMI	RGGWCCY	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	7 cut(s)	107, 238, 379, 418, 436, 457, 490
PspGI	CCWGG	7 cut(s)	107, 238, 379, 418, 436, 457, 490
PspPI	GGNCC	1 cut(s)	236
PspPPI	RGGWCCY	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	540
SetI	ASST	3 cut(s)	241, 277, 385
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	222
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	3 cut(s)	5, 165, 513
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	2 cut(s)	134, 162
TasI	AATT	3 cut(s)	5, 165, 513
TauI	GCSGC	8 cut(s)	74, 288, 309, 432, 486, 522, 525, 528
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	2 cut(s)	224, 250
TseI	GCWGC	4 cut(s)	68, 183, 264, 351
TspDTI	ATGAA	2 cut(s)	7, 17
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	2 cut(s)	224, 250
Van91I	CCANNNNNTGG	3 cut(s)	425, 443, 464
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.