Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010587

Physical Location & Seq

Genomic Coordinates Reverse (-)

21318830 .. 21320065

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G205600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACTTTCAAAGCTTTCCTTTTGCTGGGCCTTCTGTTTGGCTCTGTGGTTCTCATCTCTTCCACTGTCGCAGCTGAGACATCCAAAGATGAGAAGAAAGTGGATGAGGCACAGGAAGCGAACCCCGTAGATGACGCAAAACCATATTGCGGGTGTTGCACTCGTTATGGCTACTATAGATGCGGCCCACAATGTTGTCGGCAACCTGAAGCTGATGATCAGCCTCAAGAAGTAGGCGATAGCCTTGAAACGAACCGGCCTGACGGATATGGATATGGTGGAGGCGGCTACGGAGGGGGCCGTGGTGGAGGCTATGGAGGAGGAGGCCGTGGAGGTGGGGGCCGCGGTGGTGGCTATGGAGGAGGAGGCCATGGAGGTGGCCGCGGGAGAGGTGGTGGAGGAGGCGGCTATGGCCGAGGCGGTGGCGGTGGCGGTGGCGGAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

14.53

Weight (kDa)

6.55

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41601 FvH4_6g41604
prunus_persica	Prupe.3G205600_v2.0.a1 Prupe.3G205700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157361
rosa_laevigata	RLG00000020978 RLG00000020980 RLG00000020981
rosa_multiflora	Rmu_sc0010103.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029540 Rroxscaffold_2G00092280 Rroxscaffold_2G00092300
rosa_rugosa	Rorug02G0459700 Rorug02G0459900
rosa_samantha	Rh2AG524600 Rh2BG539000 Rh2CG509400 Rh2CG509600 Rh2DG547900
rosa_wichuraiana	Rw2G043430 Rw2G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	345, 384
AcoI	YGGCCR	2 cut(s)	379, 412
AcuI	CTGAAG	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	25, 149
AgsI	TTSAA	2 cut(s)	10, 248
AluBI	AGCT	3 cut(s)	14, 74, 212
AluI	AGCT	3 cut(s)	14, 74, 212
Alw26I	GTCTC	1 cut(s)	71
AoxI	GGCC	9 cut(s)	28, 184, 257, 298, 325, 340, 367, 379, 412
ApeKI	GCWGC	1 cut(s)	71
AspS9I	GGNCC	4 cut(s)	28, 185, 298, 340
BbvI	GCAGC	1 cut(s)	83
BceAI	ACGGC	2 cut(s)	285, 312
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	175
BisI	GCNGC	6 cut(s)	72, 184, 286, 343, 382, 406
BlsI	GCNGC	6 cut(s)	73, 185, 287, 344, 383, 407
BmgT120I	GGNCC	4 cut(s)	28, 185, 298, 340
BmiI	GGNNCC	2 cut(s)	299, 341
BmsI	GCATC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	210
BsaJI	CCNNGG	6 cut(s)	301, 328, 343, 370, 382, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 149
Bse118I	RCCGGY	1 cut(s)	255
BseDI	CCNNGG	6 cut(s)	301, 328, 343, 370, 382, 415
BseGI	GGATG	2 cut(s)	80, 109
BseLI	CCNNNNNNNGG	2 cut(s)	25, 149
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	5 cut(s)	333, 336, 375, 378, 414
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	345, 384
BshFI	GGCC	9 cut(s)	30, 186, 259, 300, 327, 342, 369, 381, 414
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	25, 149
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	9 cut(s)	30, 186, 259, 300, 327, 342, 369, 381, 414
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	370
BspANI	GGCC	9 cut(s)	30, 186, 259, 300, 327, 342, 369, 381, 414
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	2 cut(s)	345, 384
BspLI	GGNNCC	2 cut(s)	299, 341
BsrFI	RCCGGY	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	6 cut(s)	301, 328, 343, 370, 382, 415
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	5 cut(s)	301, 328, 343, 370, 382
BstF5I	GGATG	2 cut(s)	80, 109
BstFNI	CGCG	2 cut(s)	345, 384
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 156, 351, 411
BstSFI	CTRYAG	1 cut(s)	175
BstUI	CGCG	2 cut(s)	345, 384
BstV1I	GCAGC	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	377
BsuRI	GGCC	9 cut(s)	30, 186, 259, 300, 327, 342, 369, 381, 414
BtgI	CCRYGG	5 cut(s)	301, 328, 343, 370, 382
BtsCI	GGATG	2 cut(s)	80, 109
BtsIMutI	CAGTG	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	4 cut(s)	28, 185, 298, 340
Cfr42I	CCGCGG	2 cut(s)	346, 385
CseI	GACGC	1 cut(s)	143
CviAII	CATG	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	379, 412
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	374
FaiI	YATR	9 cut(s)	145, 168, 177, 270, 276, 315, 357, 372, 411
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	1 cut(s)	370
FauI	CCCGC	2 cut(s)	143, 377
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	6 cut(s)	72, 184, 286, 343, 382, 406
FokI	GGATG	2 cut(s)	67, 116
Fsp4HI	GCNGC	6 cut(s)	72, 184, 286, 343, 382, 406
GluI	GCNGC	6 cut(s)	72, 184, 286, 343, 382, 406
GsaI	CCCAGC	1 cut(s)	29
HaeIII	GGCC	9 cut(s)	30, 186, 259, 300, 327, 342, 369, 381, 414
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	12
HpaII	CCGG	1 cut(s)	256
Hpy188III	TCNNGA	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 156, 351, 411
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	217
KspI	CCGCGG	2 cut(s)	346, 385
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	11, 98, 219, 269, 273
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	170
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	51, 106
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	3 cut(s)	74, 345, 384
MspI	CCGG	1 cut(s)	256
MvnI	CGCG	2 cut(s)	345, 384
MwoI	GCNNNNNNNGC	4 cut(s)	116, 156, 351, 411
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	2 cut(s)	299, 341
NmeAIII	GCCGAG	1 cut(s)	440
PkrI	GCNGC	6 cut(s)	73, 185, 287, 344, 383, 407
PspFI	CCCAGC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	299, 341
PspPI	GGNCC	4 cut(s)	28, 185, 298, 340
PvuII	CAGCTG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	375
SacII	CCGCGG	2 cut(s)	346, 385
SatI	GCNGC	6 cut(s)	72, 184, 286, 343, 382, 406
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	4 cut(s)	28, 185, 298, 340
SetI	ASST	7 cut(s)	16, 76, 208, 214, 337, 379, 394
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	175
Sfr303I	CCGCGG	2 cut(s)	346, 385
SgrBI	CCGCGG	2 cut(s)	346, 385
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	67
TauI	GCSGC	5 cut(s)	186, 288, 345, 384, 408
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	71
TspGWI	ACGGA	2 cut(s)	279, 306
TspRI	CASTG	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.