RLG00000020980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010587
Physical Location & Seq
Reverse (-)
70764838 .. 70766018
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020980

Sequence Viewer

Length: 477 bp
ATGAATTTTAAGGCTTTCATTTTGCTAGGGCTTCTGTTTGGGCTTGTTCTTATTTCTTCCATTGTCACAGCTGATCAGAAATCCAAAGATAAGAATACAGCTGTAGTGAATGAGGCGACAAAGGAAACGAATCCAGAGCAAGTAGATGACACTAAGCAAGGTGGTGGAGGATATTGCGGCTGCTGCTACTGGCTTCATGGCTACTATTATTGTGGTAATCAGTGCTGTTGGCCTGAGAAAGAAGAATCAAAAGTGGCTCGGGAGGAGGCGGTCATGGAGGTGGATGGAGAGGAGGTGGTGGTGGATATGGAAGAGGTGGCGGATGGGGAAGAGGCGGCCGAGGCAAAGGCTAGGGAGGAGGCGGTCGTGGTGGTGGATGGGGAGGCAGATGGGGAGGAGGTGGTCGTGGATATGGAAGAGGTGGTGGTGGATATGGAAGAGGTGGCGGCTGGGGTGGTGGTGGAGGAAATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.21

Weight (kDa)

4.05

Isoelectric Point (pI)

26.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRP PF07172 1 - 61 1e-05 Glycine rich protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 177, 269, 320, 335, 362, 446
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 1 cut(s) 4
AluBI AGCT 2 cut(s) 71, 101
AluI AGCT 2 cut(s) 71, 101
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 2 cut(s) 230, 336
ApeKI GCWGC 2 cut(s) 180, 183
ApoI RAATTY 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 258
BbvI GCAGC 2 cut(s) 167, 170
BccI CCATC 4 cut(s) 278, 317, 371, 383
BclI TGATCA 1 cut(s) 73
BfaI CTAG 2 cut(s) 26, 351
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 5 cut(s) 178, 181, 184, 336, 447
BlsI GCNGC 5 cut(s) 179, 182, 185, 337, 448
BmeT110I CYCGRG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bse1I ACTGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 3 cut(s) 289, 328, 382
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 4 cut(s) 278, 305, 371, 410
BseX3I CGGCCG 1 cut(s) 336
BseXI GCAGC 2 cut(s) 167, 170
BseYI CCCAGC 1 cut(s) 449
Bsh1285I CGRYCG 2 cut(s) 339, 366
BshFI GGCC 2 cut(s) 232, 338
BsiEI CGRYCG 2 cut(s) 339, 366
BsiHKCI CYCGRG 1 cut(s) 258
BsnI GGCC 2 cut(s) 232, 338
BsoBI CYCGRG 1 cut(s) 258
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 6 cut(s) 177, 269, 320, 335, 362, 446
BspANI GGCC 2 cut(s) 232, 338
BspCNI CTCAG 1 cut(s) 226
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 1 cut(s) 73
Bst6I CTCTTC 4 cut(s) 306, 324, 411, 432
BstDEI CTNAG 2 cut(s) 153, 234
BstF5I GGATG 3 cut(s) 289, 328, 382
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMCI CGRYCG 2 cut(s) 339, 366
BstMWI GCNNNNNNNGC 2 cut(s) 183, 341
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 167, 170
BstZI CGGCCG 1 cut(s) 336
BsuRI GGCC 2 cut(s) 232, 338
BtsCI GGATG 3 cut(s) 289, 328, 382
BtsIMutI CAGTG 1 cut(s) 227
CviAII CATG 2 cut(s) 197, 274
DdeI CTNAG 2 cut(s) 153, 234
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 336
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 4 cut(s) 306, 324, 411, 432
EarI CTCTTC 4 cut(s) 306, 324, 411, 432
EciI GGCGGA 1 cut(s) 335
EclXI CGGCCG 1 cut(s) 336
Eco52I CGGCCG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 258
FaeI CATG 2 cut(s) 200, 277
FaiI YATR 5 cut(s) 198, 275, 308, 413, 434
FatI CATG 2 cut(s) 196, 273
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 5 cut(s) 178, 181, 184, 336, 447
FokI GGATG 3 cut(s) 296, 335, 389
Fsp4HI GCNGC 5 cut(s) 178, 181, 184, 336, 447
FspBI CTAG 2 cut(s) 26, 351
GluI GCNGC 5 cut(s) 178, 181, 184, 336, 447
GsaI CCCAGC 1 cut(s) 453
HaeIII GGCC 2 cut(s) 232, 338
Hin1II CATG 2 cut(s) 200, 277
HinfI GANTC 2 cut(s) 130, 245
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 134, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 341
HpyF3I CTNAG 2 cut(s) 153, 234
Hsp92II CATG 2 cut(s) 200, 277
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 147, 175, 246, 435
Lsp1109I GCAGC 2 cut(s) 167, 170
MaeI CTAG 2 cut(s) 26, 351
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 6 cut(s) 48, 254, 323, 341, 428, 449
MluCI AATT 2 cut(s) 4, 468
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 2 cut(s) 71, 101
MwoI GCNNNNNNNGC 2 cut(s) 183, 341
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 200, 277
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 130, 245
PkrI GCNGC 5 cut(s) 179, 182, 185, 337, 448
PspFI CCCAGC 1 cut(s) 449
PvuII CAGCTG 2 cut(s) 71, 101
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 5 cut(s) 178, 181, 184, 336, 447
Sau3AI GATC 1 cut(s) 73
SetI ASST 9 cut(s) 73, 103, 163, 282, 297, 318, 402, 423, 444
SfcI CTRYAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 2 cut(s) 4, 468
SsiI CCGC 6 cut(s) 177, 269, 320, 335, 362, 446
SspMI CTAG 2 cut(s) 26, 351
TasI AATT 2 cut(s) 4, 468
TauI GCSGC 3 cut(s) 180, 338, 449
TfiI GAWTC 2 cut(s) 130, 245
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 227
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 180, 183
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 7, 17, 185
TspRI CASTG 1 cut(s) 227
XapI RAATTY 1 cut(s) 4
XspI CTAG 2 cut(s) 26, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.