Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010587

Physical Location & Seq

Genomic Coordinates Reverse (-)

75222958 .. 75223311

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG524600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTGGGGATGCGGTTTGCACTGTTGTGATGGTAGAGGACCTGGCACTGGCTGTCCATATGGAGGCAGCACTACAGGTGTTGGAGGCGGCATTCCGGGCGTTGGAGGCGGCATTCCGGGCGTTGGAGGAGGCATTCCCGGCGTTGGAGGAGGCAGCATTCCGGGTGTTGGAGGAGGCGTTCCAGGTGTTAGAGGCATTCCGGGGGTTGGCGGTGGCGTTCCAGGGAATGGCGGCATTCCAGGCGTTGGACGCGGTGTTCCAGGGGTTGGTGGAGGAATAGGAGGCGGCATTCCAGGCATGCCCGGCCGTGGAGGAATTGGCGGCGGCGGCCGAGTCCGTGGGCGAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

10.03

Weight (kDa)

10.63

Isoelectric Point (pI)

20.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41601 FvH4_6g41604
prunus_persica	Prupe.3G205600_v2.0.a1 Prupe.3G205700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157361
rosa_laevigata	RLG00000020978 RLG00000020980 RLG00000020981
rosa_multiflora	Rmu_sc0010103.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029540 Rroxscaffold_2G00092280 Rroxscaffold_2G00092300
rosa_rugosa	Rorug02G0459700 Rorug02G0459900
rosa_samantha	Rh2AG524600 Rh2BG539000 Rh2CG509400 Rh2CG509600 Rh2DG547900
rosa_wichuraiana	Rw2G043430 Rw2G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	227, 245, 266
AccII	CGCG	1 cut(s)	252
AcoI	YGGCCR	2 cut(s)	304, 328
AjnI	CCWGG	6 cut(s)	40, 181, 220, 238, 259, 292
AleI	CACNNNNGTG	1 cut(s)	24
AloI	GAACNNNNNNTCC	4 cut(s)	162, 194, 240, 272
AoxI	GGCC	2 cut(s)	304, 328
ApeKI	GCWGC	2 cut(s)	66, 153
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	6 cut(s)	96, 117, 138, 162, 201, 303
AvaII	GGWCC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	78, 165
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	6 cut(s)	42, 183, 222, 240, 261, 294
BcnI	CCSGG	6 cut(s)	96, 117, 138, 162, 201, 303
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	9 cut(s)	67, 88, 109, 154, 232, 286, 322, 325, 328
BlsI	GCNGC	9 cut(s)	68, 89, 110, 155, 233, 287, 323, 326, 329
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BpuMI	CCSGG	6 cut(s)	96, 117, 138, 162, 201, 303
BsaJI	CCNNGG	5 cut(s)	200, 221, 260, 307, 337
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	6 cut(s)	42, 183, 222, 240, 261, 294
BseDI	CCNNGG	5 cut(s)	200, 221, 260, 307, 337
BseGI	GGATG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	3 cut(s)	141, 162, 186
BseX3I	CGGCCG	2 cut(s)	304, 328
BseXI	GCAGC	2 cut(s)	78, 165
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	2 cut(s)	307, 331
BshFI	GGCC	2 cut(s)	306, 330
BsiEI	CGRYCG	2 cut(s)	307, 331
BsiSI	CCGG	6 cut(s)	95, 116, 138, 161, 200, 303
BsmI	GAATGC	7 cut(s)	90, 111, 132, 156, 195, 234, 288
BsnI	GGCC	2 cut(s)	306, 330
BspANI	GGCC	2 cut(s)	306, 330
BspFNI	CGCG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	5 cut(s)	200, 221, 260, 307, 337
Bst2UI	CCWGG	6 cut(s)	42, 183, 222, 240, 261, 294
Bst4CI	ACNGT	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	299
BstDSI	CCRYGG	2 cut(s)	307, 337
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	252
BstMCI	CGRYCG	2 cut(s)	307, 331
BstMWI	GCNNNNNNNGC	9 cut(s)	96, 105, 117, 138, 240, 249, 294, 303, 327
BstNI	CCWGG	6 cut(s)	42, 183, 222, 240, 261, 294
BstNSI	RCATGY	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	78, 165
BstZI	CGGCCG	2 cut(s)	304, 328
BsuRI	GGCC	2 cut(s)	306, 330
BtgI	CCRYGG	2 cut(s)	307, 337
BtsCI	GGATG	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	19, 45
Cac8I	GCNNGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	258
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	3 cut(s)	51, 306, 330
CviKI_1	RGCY	3 cut(s)	51, 306, 330
EaeI	YGGCCR	2 cut(s)	304, 328
EagI	CGGCCG	2 cut(s)	304, 328
EclXI	CGGCCG	2 cut(s)	304, 328
Eco47I	GGWCC	1 cut(s)	38
Eco52I	CGGCCG	2 cut(s)	304, 328
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	6 cut(s)	40, 181, 220, 238, 259, 292
FaeI	CATG	1 cut(s)	301
FaiI	YATR	3 cut(s)	58, 60, 299
FatI	CATG	1 cut(s)	297
FauNDI	CATATG	1 cut(s)	58
Fnu4HI	GCNGC	9 cut(s)	67, 88, 109, 154, 232, 286, 322, 325, 328
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	9 cut(s)	67, 88, 109, 154, 232, 286, 322, 325, 328
GluI	GCNGC	9 cut(s)	67, 88, 109, 154, 232, 286, 322, 325, 328
HaeIII	GGCC	2 cut(s)	306, 330
HapII	CCGG	6 cut(s)	95, 116, 138, 161, 200, 303
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	301
HinfI	GANTC	1 cut(s)	333
HpaII	CCGG	6 cut(s)	95, 116, 138, 161, 200, 303
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	9 cut(s)	96, 105, 117, 138, 240, 249, 294, 303, 327
Hsp92II	CATG	1 cut(s)	301
Lsp1109I	GCAGC	2 cut(s)	78, 165
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	6 cut(s)	61, 82, 103, 124, 148, 226
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	6 cut(s)	95, 116, 138, 161, 200, 303
Mva1269I	GAATGC	7 cut(s)	90, 111, 132, 156, 195, 234, 288
MvaI	CCWGG	6 cut(s)	42, 183, 222, 240, 261, 294
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	9 cut(s)	96, 105, 117, 138, 240, 249, 294, 303, 327
NciI	CCSGG	6 cut(s)	96, 117, 138, 162, 201, 303
NdeI	CATATG	1 cut(s)	58
NlaIII	CATG	1 cut(s)	301
NspI	RCATGY	1 cut(s)	301
OliI	CACNNNNGTG	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	301
PctI	GAATGC	7 cut(s)	90, 111, 132, 156, 195, 234, 288
PflMI	CCANNNNNTGG	3 cut(s)	227, 245, 266
PkrI	GCNGC	9 cut(s)	68, 89, 110, 155, 233, 287, 323, 326, 329
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	38
Psp6I	CCWGG	6 cut(s)	40, 181, 220, 238, 259, 292
PspGI	CCWGG	6 cut(s)	40, 181, 220, 238, 259, 292
PspPI	GGNCC	1 cut(s)	38
PspPPI	RGGWCCY	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	24
SatI	GCNGC	9 cut(s)	67, 88, 109, 154, 232, 286, 322, 325, 328
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	342
SetI	ASST	3 cut(s)	43, 79, 187
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	24
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	23
TasI	AATT	1 cut(s)	315
TauI	GCSGC	7 cut(s)	90, 111, 234, 288, 324, 327, 330
TscAI	CASTG	2 cut(s)	26, 52
TseI	GCWGC	2 cut(s)	66, 153
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	26, 52
Van91I	CCANNNNNTGG	3 cut(s)	227, 245, 266
VpaK11BI	GGWCC	1 cut(s)	38
XceI	RCATGY	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.