RLG00000020981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010587
Physical Location & Seq
Reverse (-)
70770844 .. 70771594
751 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020981

Sequence Viewer

Length: 600 bp
ATGGAGAATTTCAAGGCTTTCAATTTGCTAGGGCTTCTGTTTGCCCTTGTTCTCATCTCTTCCACTGTCACAGCTGATGAGAAATCCAAAGAGGAGAATAAAGCTGTAGTGGATGGGGCAACAAAGGAGACGAATCCGGTGCCAGTTGATGACGTAAAACAAGGTCGAGGCGGAGGATATTGCGGGCGCTGCTGCTGGATACGTGGCTACCATTATTGTGGTAGTCGGTGTTGTTGGCCTGAGAAAGAAGAAACAGAAGCTGTAGGCGAGGCCGCCGCTGATGCCAACCCTGATGGATATGGCTGGGGAGGCGGACGAGGTGGAGGTGGCTGGGGAGGCGGACGAGGTGGCGGTGGCTGGGGAGGCGGAAGAGGTGGCGGTGGCTGGGGAGGTGGAAGAGGCGGCGGTGGCGGACGAGGAGGAGGTGGTGGTGGCTGGGGAGGAGGAGGCGGTGCAGCAGCTTATGAAGCCAACCCTGATGGATATGGCTGGGGAGGGGGACGAGGAGGCGGACGAGGTGGAGGTGGCTGGGGAGGCGGACGAGGCGGAGGTGGCTGGGGAGGCGGACGAGGCGGAGGTGGTTGGGGAGGGGGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

19.11

Weight (kDa)

8.22

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AcsI RAATTY 1 cut(s) 7
AgsI TTSAA 2 cut(s) 13, 22
AluBI AGCT 4 cut(s) 74, 104, 260, 461
AluI AGCT 4 cut(s) 74, 104, 260, 461
Alw26I GTCTC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 2 cut(s) 236, 270
ApeKI GCWGC 4 cut(s) 189, 192, 455, 458
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 139
BbvI GCAGC 4 cut(s) 176, 179, 467, 470
BccI CCATC 3 cut(s) 107, 287, 473
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciVI GTATCC 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 2 cut(s) 105, 261
BfoI RGCGCY 1 cut(s) 190
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 7 cut(s) 190, 193, 273, 276, 403, 456, 459
BlsI GCNGC 7 cut(s) 191, 194, 274, 277, 404, 457, 460
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 6 cut(s) 107, 432, 435, 456, 459, 519
BseXI GCAGC 4 cut(s) 176, 179, 467, 470
BseYI CCCAGC 8 cut(s) 303, 330, 357, 384, 435, 489, 528, 555
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 2 cut(s) 238, 272
BshNI GGYRCC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 513
BsmAI GTCTC 1 cut(s) 122
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 2 cut(s) 238, 272
BspANI GGCC 2 cut(s) 238, 272
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 3 cut(s) 64, 364, 391
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 122
BstSFI CTRYAG 2 cut(s) 105, 261
BstV1I GCAGC 4 cut(s) 176, 179, 467, 470
BstXI CCANNNNNNTGG 1 cut(s) 218
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 2 cut(s) 238, 272
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 240
Eam1104I CTCTTC 3 cut(s) 64, 364, 391
EarI CTCTTC 3 cut(s) 64, 364, 391
Esp3I CGTCTC 1 cut(s) 122
FaiI YATR 3 cut(s) 300, 465, 486
FaqI GGGAC 1 cut(s) 513
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 7 cut(s) 190, 193, 273, 276, 403, 456, 459
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 7 cut(s) 190, 193, 273, 276, 403, 456, 459
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 188
GluI GCNGC 7 cut(s) 190, 193, 273, 276, 403, 456, 459
GsaI CCCAGC 8 cut(s) 307, 334, 361, 388, 439, 493, 532, 559
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 2 cut(s) 238, 272
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 189
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 1 cut(s) 133
HpaII CCGG 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 2 cut(s) 153, 202
HpyCH4V TGCA 1 cut(s) 455
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 2 cut(s) 153, 202
HspAI GCGC 1 cut(s) 187
Lsp1109I GCAGC 4 cut(s) 176, 179, 467, 470
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 153, 202
MaeIII GTNAC 2 cut(s) 67, 593
MboII GAAGA 4 cut(s) 51, 260, 381, 408
MluCI AATT 2 cut(s) 7, 22
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 2 cut(s) 74, 278
MspI CCGG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 7 cut(s) 191, 194, 274, 277, 404, 457, 460
Ppu21I YACGTR 1 cut(s) 203
PspFI CCCAGC 8 cut(s) 303, 330, 357, 384, 435, 489, 528, 555
PspN4I GGNNCC 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 216
SatI GCNGC 7 cut(s) 190, 193, 273, 276, 403, 456, 459
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 2 cut(s) 105, 261
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 2 cut(s) 7, 22
SspMI CTAG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 2 cut(s) 156, 205
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 7, 22
TauI GCSGC 3 cut(s) 275, 278, 405
TfiI GAWTC 1 cut(s) 133
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 4 cut(s) 189, 192, 455, 458
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 480
TspRI CASTG 1 cut(s) 70
XapI RAATTY 1 cut(s) 7
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.