FvH4_6g47460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001497
Physical Location & Seq
Reverse (-)
35949536 .. 35952998
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47460.t1

Sequence Viewer

Length: 585 bp
ATGGGCTTTACCAATGAGTTGCAGAAAGTAGATATTTGCTCCAAGATCTTTAGTTTGAAAATTGTGTATAGAAGGGTACTTCTGGTTTTTAAAAAACTTTCAATTCATTTTTTCACCATGGTTAGAGGTAGAGTAAAAGGGAAGAAACAAAATGAAATTATCGCTGGTGAGGATCCTGGAAGCACTGAAGGGCATAAGATTCTACCAAACAGGAGAAGAGGAAGGCCACAAAAGCCATTGAAGGATGACGTTGGAAAAGTGAAAGTTCAGAAGATACAAGATAAGGATGAGAAAATTCATATTTCGCGAGATGACGTAACAAACCACTCTACTATAGAGAATGGCACAAAAAGGAAGAGGTCTGCTCATGAAAATTTAAACTCCATCCAAGAGGAGAACAGCATGGAAATAAAGTCCATCCTTGATAAACCTACCAAATCTCTTGGATTCCGACAAAGTGGGAGTAAGCGGAAAAACAAGCCTCACCGAGCTGCTGAAGCTGAGGTGTTTGGGGATTGGCAGTTGTTGCAGCTGATAATTAAGGATACTCAAAGACTCAACAAAATCAGGACTCACAAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.43

Weight (kDa)

10.24

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 307
AciI CCGC 1 cut(s) 469
AclWI GGATC 2 cut(s) 167, 180
AcsI RAATTY 2 cut(s) 294, 373
AcuI CTGAAG 2 cut(s) 207, 516
AfaI GTAC 1 cut(s) 78
AgsI TTSAA 3 cut(s) 58, 102, 241
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 3 cut(s) 491, 500, 532
AluI AGCT 3 cut(s) 491, 500, 532
AlwI GGATC 2 cut(s) 167, 180
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 491, 529
ApoI RAATTY 2 cut(s) 294, 373
AsuHPI GGTGA 3 cut(s) 106, 179, 476
BamHI GGATCC 1 cut(s) 172
BbvCI CCTCAGC 1 cut(s) 501
BbvI GCAGC 2 cut(s) 478, 541
BccI CCATC 2 cut(s) 392, 425
BciT130I CCWGG 1 cut(s) 177
BciVI GTATCC 1 cut(s) 538
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 538
BglII AGATCT 1 cut(s) 45
BisI GCNGC 2 cut(s) 492, 530
BlsI GCNGC 2 cut(s) 493, 531
Bme1390I CCNGG 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 349, 381
Bpu10I CCTNAGC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 4 cut(s) 250, 292, 384, 417
BseMII CTCAG 1 cut(s) 492
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 478, 541
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 1 cut(s) 226
BsnI GGCC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 45, 172
Bsp19I CCATGG 1 cut(s) 117
Bsp68I TCGCGA 1 cut(s) 307
BspACI CCGC 1 cut(s) 469
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 493
BspFNI CGCG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 2 cut(s) 167, 180
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 45, 172
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 177
Bst6I CTCTTC 2 cut(s) 211, 350
BstAPI GCANNNNNTGC 1 cut(s) 526
BstDEI CTNAG 1 cut(s) 501
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 4 cut(s) 250, 292, 384, 417
BstFNI CGCG 1 cut(s) 307
BstKTI GATC 2 cut(s) 48, 175
BstMBI GATC 2 cut(s) 45, 172
BstMWI GCNNNNNNNGC 3 cut(s) 232, 497, 526
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 478, 541
BstX2I RGATCY 2 cut(s) 45, 172
BstYI RGATCY 2 cut(s) 45, 172
BsuI GTATCC 1 cut(s) 538
BsuRI GGCC 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 4 cut(s) 250, 292, 384, 417
BtsIMutI CAGTG 1 cut(s) 183
BtuMI TCGCGA 1 cut(s) 307
CciI TCATGA 1 cut(s) 367
Csp6I GTAC 1 cut(s) 77
CviAII CATG 3 cut(s) 118, 368, 403
CviJI RGCY 7 cut(s) 6, 226, 235, 481, 491, 500, 532
CviKI_1 RGCY 7 cut(s) 6, 226, 235, 481, 491, 500, 532
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 501
DpnI GATC 2 cut(s) 47, 174
DpnII GATC 2 cut(s) 45, 172
DraI TTTAAA 2 cut(s) 91, 378
Eam1104I CTCTTC 2 cut(s) 211, 350
EarI CTCTTC 2 cut(s) 211, 350
Eco130I CCWWGG 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 207, 516
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 3 cut(s) 121, 371, 406
FaiI YATR 7 cut(s) 69, 119, 195, 300, 335, 369, 404
FatI CATG 3 cut(s) 117, 367, 402
Fnu4HI GCNGC 2 cut(s) 492, 530
FokI GGATG 4 cut(s) 257, 299, 371, 404
Fsp4HI GCNGC 2 cut(s) 492, 530
GluI GCNGC 2 cut(s) 492, 530
HaeIII GGCC 1 cut(s) 226
Hin1II CATG 3 cut(s) 121, 371, 406
HinfI GANTC 4 cut(s) 199, 447, 555, 571
HphI GGTGA 3 cut(s) 106, 179, 476
Hpy188I TCNGA 2 cut(s) 270, 452
Hpy188III TCNNGA 3 cut(s) 306, 368, 568
HpyAV CCTTC 4 cut(s) 66, 182, 216, 235
HpyCH4IV ACGT 2 cut(s) 249, 315
HpyCH4V TGCA 2 cut(s) 22, 529
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 497, 526
HpyF3I CTNAG 1 cut(s) 501
HpySE526I ACGT 2 cut(s) 249, 315
Hsp92II CATG 3 cut(s) 121, 371, 406
Kzo9I GATC 2 cut(s) 45, 172
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 6 cut(s) 68, 150, 162, 189, 196, 553
Lsp1109I GCAGC 2 cut(s) 478, 541
MaeII ACGT 2 cut(s) 249, 315
MaeIII GTNAC 1 cut(s) 316
MalI GATC 2 cut(s) 47, 174
MboI GATC 2 cut(s) 45, 172
MboII GAAGA 4 cut(s) 154, 228, 283, 367
MflI RGATCY 2 cut(s) 45, 172
MluCI AATT 6 cut(s) 60, 102, 156, 294, 373, 537
MlyI GAGTC 2 cut(s) 549, 565
MmeI TCCRAC 2 cut(s) 232, 475
MnlI CCTC 7 cut(s) 119, 163, 212, 351, 385, 492, 496
MseI TTAA 4 cut(s) 90, 377, 540, 583
MspA1I CMGCKG 1 cut(s) 532
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 3 cut(s) 232, 497, 526
NcoI CCATGG 1 cut(s) 117
NdeII GATC 2 cut(s) 45, 172
NlaIII CATG 3 cut(s) 121, 371, 406
NlaIV GGNNCC 1 cut(s) 174
NruI TCGCGA 1 cut(s) 307
PagI TCATGA 1 cut(s) 367
PfeI GAWTC 2 cut(s) 199, 447
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 2 cut(s) 493, 531
PleI GAGTC 2 cut(s) 549, 565
PpsI GAGTC 2 cut(s) 549, 565
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 174
PsuI RGATCY 2 cut(s) 45, 172
PvuII CAGCTG 1 cut(s) 532
RruI TCGCGA 1 cut(s) 307
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 4 cut(s) 90, 377, 540, 583
SatI GCNGC 2 cut(s) 492, 530
Sau3AI GATC 2 cut(s) 45, 172
SchI GAGTC 2 cut(s) 549, 565
ScrFI CCNGG 1 cut(s) 177
SetI ASST 9 cut(s) 130, 252, 318, 362, 433, 493, 502, 507, 534
SfcI CTRYAG 1 cut(s) 333
Sse9I AATT 6 cut(s) 60, 102, 156, 294, 373, 537
SsiI CCGC 1 cut(s) 469
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 117
TaiI ACGT 2 cut(s) 252, 318
TasI AATT 6 cut(s) 60, 102, 156, 294, 373, 537
TfiI GAWTC 2 cut(s) 199, 447
Tru1I TTAA 4 cut(s) 90, 377, 540, 583
Tru9I TTAA 4 cut(s) 90, 377, 540, 583
TscAI CASTG 1 cut(s) 190
TseI GCWGC 2 cut(s) 491, 529
TspDTI ATGAA 4 cut(s) 95, 168, 287, 384
TspRI CASTG 1 cut(s) 190
XapI RAATTY 2 cut(s) 294, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.