Rroxscaffold_1G00004290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001497
Physical Location & Seq
Reverse (-)
6002401 .. 6006066
3666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004290.1

Sequence Viewer

Length: 375 bp
ATGGAAGCACCCAATCTTTTTTTGCGGCGAGGAGGAGAAAATACCTGCACAAAAGAGAAGGGAAGACCACTAAAGCCTTTAAAGGATGAGATTGATGAAGAAGAAGTAGAAAAAGTAGAAGCAGATGATATTGAGAATGCAAAGGCGGGTATTCTAAGTAAGGAGATAAAAAGCCCCTCTGCAGCAGAGAATGGAAAGAAGAGGAAGCGGCATTCACAGGCCAAGGAGAAGTCGGATTCAGTGAAGGAGGAAAACGGTAATGGAACACGATCAAGTACAGATGACTCAACTAAATCTAATGGATTTCGGCATAATGGGAGCAGGCGGAAAAATAAACCCCGTCGAGCTGCTGAGGCTGGGGTTGAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.75

Weight (kDa)

9.25

Isoelectric Point (pI)

63.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 53
AciI CCGC 4 cut(s) 25, 146, 208, 325
AfaI GTAC 1 cut(s) 277
AgsI TTSAA 1 cut(s) 365
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 182, 347
BbsI GAAGAC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 194, 334
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 4 cut(s) 26, 183, 209, 348
BlsI GCNGC 4 cut(s) 27, 184, 210, 349
BpiI GAAGAC 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 342
BseRI GAGGAG 2 cut(s) 45, 48
BseXI GCAGC 2 cut(s) 194, 334
BseYI CCCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 31
BshFI GGCC 1 cut(s) 221
BsmI GAATGC 3 cut(s) 142, 211, 371
BsnI GGCC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 4 cut(s) 25, 146, 208, 325
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 343
BspMAI CTGCAG 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 2 cut(s) 155, 351
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 194, 334
BstV2I GAAGAC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 221
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 276
CviJI RGCY 5 cut(s) 76, 174, 221, 347, 356
CviKI_1 RGCY 5 cut(s) 76, 174, 221, 347, 356
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 2 cut(s) 155, 351
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
DraI TTTAAA 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaiI YATR 1 cut(s) 312
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 26, 183, 209, 348
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 4 cut(s) 26, 183, 209, 348
GluI GCNGC 4 cut(s) 26, 183, 209, 348
GsaI CCCAGC 1 cut(s) 360
HaeIII GGCC 1 cut(s) 221
HinfI GANTC 2 cut(s) 236, 284
Hpy188I TCNGA 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 52, 238
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 4 cut(s) 48, 140, 182, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 2 cut(s) 155, 351
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 4 cut(s) 58, 203, 307, 342
Lsp1109I GCAGC 2 cut(s) 194, 334
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 4 cut(s) 75, 110, 113, 211
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 6 cut(s) 23, 26, 187, 195, 241, 346
MseI TTAA 1 cut(s) 80
Mva1269I GAATGC 3 cut(s) 142, 211, 371
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 1 cut(s) 269
PctI GAATGC 3 cut(s) 142, 211, 371
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 4 cut(s) 27, 184, 210, 349
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 356
PstI CTGCAG 1 cut(s) 184
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 4 cut(s) 26, 183, 209, 348
Sau3AI GATC 1 cut(s) 269
SchI GAGTC 1 cut(s) 278
SetI ASST 2 cut(s) 47, 349
SfcI CTRYAG 1 cut(s) 180
SsiI CCGC 4 cut(s) 25, 146, 208, 325
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 343
TatI WGTACW 1 cut(s) 275
TauI GCSGC 2 cut(s) 28, 211
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 246
TseI GCWGC 2 cut(s) 182, 347
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.