Rw3G020870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001497
Physical Location & Seq
Forward (+)
24965757 .. 24968055
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020870.1

Sequence Viewer

Length: 387 bp
ATGGTTAGAGGTAGGGTAAAAGGGAAGAAACAAAACATTATCACTGCTCGCGAGGATCCTGGGAGCTCAGAAGGGCATAAGATTCCACCAAACAGGAGAAGAGGAAGGCCACAAAAGCCTTTGAAGGATGATATTGGAGAAGGAAAAACTCAGAAGATACAAGATGAGGATGAGAAAAGTCATATTTCTCGCGAAGTAGAGAATGGCACAAAAAGGAAGAGAGACGCTCATGTGAATGAAAATTTGAACTCCATCCAAGAGGAGAACAGCATGGAAATAAAGTCAAGCCTTGATGATCCTACAGAGTCTGTTGGATTCCGACAAAGTGGGAGTAGGCGGAAAAACAAGCCTCACCGAGCTGCTGAAGCTGGTGTTCAGTGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.46

Weight (kDa)

9.83

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 51, 192
AciI CCGC 1 cut(s) 337
AclWI GGATC 3 cut(s) 50, 63, 290
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 384
AgsI TTSAA 2 cut(s) 124, 247
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 66, 359, 368
AluI AGCT 3 cut(s) 66, 359, 368
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 3 cut(s) 50, 63, 290
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 344
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 346
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BsaJI CCNNGG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 3 cut(s) 133, 175, 252
BseMII CTCAG 2 cut(s) 81, 164
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 346
Bsh1236I CGCG 2 cut(s) 51, 192
BshFI GGCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 216
BsmBI CGTCTC 1 cut(s) 216
BsnI GGCC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 55, 295
Bsp68I TCGCGA 2 cut(s) 51, 192
BspACI CCGC 1 cut(s) 337
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 80, 163
BspFNI CGCG 2 cut(s) 51, 192
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 3 cut(s) 50, 63, 290
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 2 cut(s) 55, 295
Bst2UI CCWGG 1 cut(s) 60
Bst6I CTCTTC 2 cut(s) 94, 212
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 67, 150
BstF5I GGATG 3 cut(s) 133, 175, 252
BstFNI CGCG 2 cut(s) 51, 192
BstKTI GATC 2 cut(s) 58, 298
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 2 cut(s) 55, 295
BstMWI GCNNNNNNNGC 2 cut(s) 115, 365
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 2 cut(s) 51, 192
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 109
BtsCI GGATG 3 cut(s) 133, 175, 252
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 383
BtuMI TCGCGA 2 cut(s) 51, 192
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 308
CseI GACGC 1 cut(s) 233
CviAII CATG 2 cut(s) 230, 271
CviJI RGCY 7 cut(s) 66, 109, 118, 288, 349, 359, 368
CviKI_1 RGCY 7 cut(s) 66, 109, 118, 288, 349, 359, 368
DdeI CTNAG 2 cut(s) 67, 150
DpnI GATC 2 cut(s) 57, 297
DpnII GATC 2 cut(s) 55, 295
Eam1104I CTCTTC 2 cut(s) 94, 212
EarI CTCTTC 2 cut(s) 94, 212
EciI GGCGGA 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 2 cut(s) 233, 274
FaiI YATR 4 cut(s) 78, 183, 231, 272
FatI CATG 2 cut(s) 229, 270
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 3 cut(s) 140, 182, 239
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 360
GluI GCNGC 1 cut(s) 360
HaeIII GGCC 1 cut(s) 109
HgaI GACGC 1 cut(s) 233
Hin1II CATG 2 cut(s) 233, 274
HinfI GANTC 3 cut(s) 82, 305, 315
HphI GGTGA 1 cut(s) 344
Hpy188I TCNGA 3 cut(s) 70, 153, 320
Hpy188III TCNNGA 2 cut(s) 50, 191
HpyAV CCTTC 4 cut(s) 65, 99, 118, 134
HpyCH4V TGCA 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 365
HpyF3I CTNAG 2 cut(s) 67, 150
Hsp92II CATG 2 cut(s) 233, 274
Kzo9I GATC 2 cut(s) 55, 295
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 4 cut(s) 45, 72, 79, 354
Lsp1109I GCAGC 1 cut(s) 346
MalI GATC 2 cut(s) 57, 297
MboI GATC 2 cut(s) 55, 295
MboII GAAGA 4 cut(s) 37, 111, 166, 229
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 1 cut(s) 241
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 2 cut(s) 292, 343
MnlI CCTC 5 cut(s) 46, 95, 160, 253, 360
MslI CAYNNNNRTG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 2 cut(s) 51, 192
MwoI GCNNNNNNNGC 2 cut(s) 115, 365
NdeII GATC 2 cut(s) 55, 295
NlaIII CATG 2 cut(s) 233, 274
NlaIV GGNNCC 1 cut(s) 57
NruI TCGCGA 2 cut(s) 51, 192
PfeI GAWTC 2 cut(s) 82, 315
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 1 cut(s) 55
RruI TCGCGA 2 cut(s) 51, 192
RseI CAYNNNNRTG 1 cut(s) 234
SacI GAGCTC 1 cut(s) 68
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 2 cut(s) 55, 295
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 68
SetI ASST 4 cut(s) 13, 68, 361, 370
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 1 cut(s) 241
SsiI CCGC 1 cut(s) 337
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 58
TasI AATT 1 cut(s) 241
TfiI GAWTC 2 cut(s) 82, 315
TscAI CASTG 2 cut(s) 49, 383
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 2 cut(s) 49, 383
XapI RAATTY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.