Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001497

Physical Location & Seq

Genomic Coordinates Forward (+)

25615716 .. 25616102

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG262300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTTAGAGGTAGGGTAAAAGGGAAGAAACAAAACATTATCACTGCTCGCGAGGATCCTGGGAGCTCAGAAGGGCATAAGATTCCACCAAACAGGAGAAGAGGAAGGCCACAAAAGCCTTTGAAGGATGATATTGGAGAAGGAAAAACTCAGAAGATACAAGATGAGGATGAGAAAAGTCATATTTCTCGCGAAGTAGAGAATGGCACAAAAAGGAAGAGAGACGATCATGTGAATGAAAATTTGAACTCCATCCAAGAGGAGAACAGCATGGAAATAAAGTCAAGCCTTGATGATCCTACAGAGTCTGTTGGATTCCGACAAAGTGGGAGTAGGCGGAAAAACAAGCCTCACCGAGCTGCTGAAGCTGGTGTTCAGTGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.51

Weight (kDa)

9.71

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42190 AT2G42190 AT2G42190 AT3G57930 AT3G57930
fragaria_vesca	FvH4_3g43480 FvH4_6g22620 FvH4_6g47460
malus_domestica	MD00G1084400.v1.1 MD03G1021700.v1.1 MD11G1024200.v1.1 MD12G1058100.v1.1 MD14G1059900.v1.1
prunus_persica	Prupe.6G020200_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1
pyrus_communis	pycom03g01840 pycom11g01910 pycom12g05310 pycom14g04860
rosa_chinensis	RchiOBHm_Chr3g0480181 RchiOBHm_Chr5g0077891
rosa_laevigata	RLG00000023514 RLG00000036723
rosa_multiflora	Rmu_sc0020879.1_g000004 Rmu_ssc0000186.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004290 Rroxscaffold_6G00401740
rosa_rugosa	Rorug03G0180800 Rorug03G0180800 Rorug05G0457000 Rorug05G0457000 Rorug05G0457000
rosa_samantha	Rh3AG232600 Rh3BG264300 Rh3CG262300 Rh3DG258000 Rh5AG511500 Rh5BG534200 Rh5CG557700 Rh5DG545600
rosa_wichuraiana	Rw3G020870 Rw5G047460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	51, 192
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	3 cut(s)	50, 63, 290
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	124, 247
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	66, 359, 368
AluI	AGCT	3 cut(s)	66, 359, 368
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	3 cut(s)	50, 63, 290
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	3 cut(s)	133, 175, 252
BseMII	CTCAG	2 cut(s)	81, 164
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	346
Bsh1236I	CGCG	2 cut(s)	51, 192
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	55, 226, 295
Bsp68I	TCGCGA	2 cut(s)	51, 192
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	80, 163
BspFNI	CGCG	2 cut(s)	51, 192
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	3 cut(s)	50, 63, 290
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	3 cut(s)	55, 226, 295
Bst2UI	CCWGG	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	94, 212
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	67, 150
BstF5I	GGATG	3 cut(s)	133, 175, 252
BstFNI	CGCG	2 cut(s)	51, 192
BstKTI	GATC	3 cut(s)	58, 229, 298
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	3 cut(s)	55, 226, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 365
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	300
BstUI	CGCG	2 cut(s)	51, 192
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	133, 175, 252
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 383
BtuMI	TCGCGA	2 cut(s)	51, 192
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	308
CviAII	CATG	2 cut(s)	230, 271
CviJI	RGCY	7 cut(s)	66, 109, 118, 288, 349, 359, 368
CviKI_1	RGCY	7 cut(s)	66, 109, 118, 288, 349, 359, 368
DdeI	CTNAG	2 cut(s)	67, 150
DpnI	GATC	3 cut(s)	57, 228, 297
DpnII	GATC	3 cut(s)	55, 226, 295
Eam1104I	CTCTTC	2 cut(s)	94, 212
EarI	CTCTTC	2 cut(s)	94, 212
EciI	GGCGGA	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	2 cut(s)	233, 274
FaiI	YATR	4 cut(s)	78, 183, 231, 272
FatI	CATG	2 cut(s)	229, 270
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	3 cut(s)	140, 182, 239
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	360
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	233, 274
HinfI	GANTC	3 cut(s)	82, 305, 315
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	3 cut(s)	70, 153, 320
Hpy188III	TCNNGA	2 cut(s)	50, 191
HpyAV	CCTTC	4 cut(s)	65, 99, 118, 134
HpyCH4V	TGCA	1 cut(s)	381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 365
HpyF3I	CTNAG	2 cut(s)	67, 150
Hsp92II	CATG	2 cut(s)	233, 274
Kzo9I	GATC	3 cut(s)	55, 226, 295
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	4 cut(s)	45, 72, 79, 354
Lsp1109I	GCAGC	1 cut(s)	346
MalI	GATC	3 cut(s)	57, 228, 297
MboI	GATC	3 cut(s)	55, 226, 295
MboII	GAAGA	4 cut(s)	37, 111, 166, 229
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	292, 343
MnlI	CCTC	5 cut(s)	46, 95, 160, 253, 360
MslI	CAYNNNNRTG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	2 cut(s)	51, 192
MwoI	GCNNNNNNNGC	2 cut(s)	115, 365
NdeII	GATC	3 cut(s)	55, 226, 295
NlaIII	CATG	2 cut(s)	233, 274
NlaIV	GGNNCC	1 cut(s)	57
NruI	TCGCGA	2 cut(s)	51, 192
PfeI	GAWTC	2 cut(s)	82, 315
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	55
RruI	TCGCGA	2 cut(s)	51, 192
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	68
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	3 cut(s)	55, 226, 295
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	4 cut(s)	13, 68, 361, 370
SfcI	CTRYAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	337
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	58
TasI	AATT	1 cut(s)	241
TfiI	GAWTC	2 cut(s)	82, 315
TscAI	CASTG	2 cut(s)	49, 383
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	49, 383
XapI	RAATTY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.