Prupe.7G074700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001497
Physical Location & Seq
Reverse (-)
11191573 .. 11195742
4170 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G074700.7

Sequence Viewer

Length: 414 bp
ATGGGTAGAGGTAGAGGTAAAGGGAAGAAACAAAGCATTATTGCTGTTCGTGAGGATCCTGGAAGTGGTGAAGAGGAGAGGATTCCACCAAACAGGAGAAGAGGAAGGCCACATAAACCATTGAAGGAAGATATTGGAGAAGGAGAAGAAGCTCAGAAGACAGAAGATGTTGAGGAAGCAAAAATTTATGTTTCTAGCAAAGACATGAAAAACCAATCTGCCATAGAGAATGGAAGGAAAAGGAAGAGGTCTGCTCAGGTCAAAGAAAATATAAAATCAGTCAAAGAGGACAAAAACGTTGAAACAAAATCAAGTCTTGATGACTCGACAAAGTCCGTTGGATTCCGACAAAATGGGAGTAGGCGGAAAAACAAGCCTCACCGAGCTGCTGAAGCTGGTGTTCAGTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.37

Weight (kDa)

9.96

Isoelectric Point (pI)

60.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 364
AclI AACGTT 1 cut(s) 297
AclWI GGATC 2 cut(s) 50, 63
AcsI RAATTY 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 2 cut(s) 124, 302
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 152, 386, 395
AluI AGCT 3 cut(s) 152, 386, 395
AlwI GGATC 2 cut(s) 50, 63
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 80, 371
BamHI GGATCC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 195
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 238, 270
Bpu10I CCTNAGC 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMII CTCAG 2 cut(s) 167, 269
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 373
BshFI GGCC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 65
BsnI GGCC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 364
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 166, 268
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 2 cut(s) 50, 63
BssMI GATC 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 60
Bst6I CTCTTC 3 cut(s) 66, 94, 239
BstDEI CTNAG 2 cut(s) 153, 255
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 410
CviAII CATG 1 cut(s) 205
CviJI RGCY 5 cut(s) 109, 152, 376, 386, 395
CviKI_1 RGCY 5 cut(s) 109, 152, 376, 386, 395
DdeI CTNAG 2 cut(s) 153, 255
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 66, 94, 239
EarI CTCTTC 3 cut(s) 66, 94, 239
EciI GGCGGA 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 208
FaiI YATR 5 cut(s) 114, 189, 206, 224, 272
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 1 cut(s) 208
HinfI GANTC 3 cut(s) 82, 323, 342
HphI GGTGA 2 cut(s) 80, 371
Hpy188I TCNGA 2 cut(s) 156, 347
Hpy188III TCNNGA 2 cut(s) 50, 317
HpyAV CCTTC 4 cut(s) 99, 118, 134, 228
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 2 cut(s) 153, 255
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 5 cut(s) 45, 72, 79, 242, 381
Lsp1109I GCAGC 1 cut(s) 373
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 297
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 8 cut(s) 37, 83, 111, 140, 158, 169, 176, 256
MflI RGATCY 1 cut(s) 55
MluCI AATT 1 cut(s) 183
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 2 cut(s) 319, 370
MnlI CCTC 9 cut(s) 8, 46, 67, 72, 95, 166, 240, 280, 387
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 392
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 82, 342
PflFI GACNNNGTC 1 cut(s) 331
PfoI TCCNGGA 1 cut(s) 58
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp1406I AACGTT 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 331
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 60
SetI ASST 8 cut(s) 13, 19, 154, 251, 261, 300, 388, 397
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 364
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 58
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 326
TasI AATT 1 cut(s) 183
TfiI GAWTC 2 cut(s) 82, 342
TscAI CASTG 1 cut(s) 410
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 1 cut(s) 410
Tth111I GACNNNGTC 1 cut(s) 331
XapI RAATTY 1 cut(s) 183
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.