Rroxscaffold_6G00401740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001497
Physical Location & Seq
Reverse (-)
24133307 .. 24136650
3344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401740.1

Sequence Viewer

Length: 408 bp
ATGGTTAGAGGTAGAGTAAAAGGGAAGAAACAAAACATTATCACTGCTCATGAGGATCCTGGGAGCTCAGAAGCGCATAAGATTCCACCAAACAGGAGAAGAGGAAGGCCACAAAAGCCTTTGAAGGATGATATTGGAGACGGAAAAACTCAGAAGATACAAGATGAGGATGAGAAAAGTCATATTTCTCGCGAAGACGTGAAAAACCACCCTAGTATAGAGAATGGCACAAAAAGGAAGAGAGACGCTCATGTCAATGAAAATTTGAACTCCATCCAAGAGGAGAACAGCATGGAAATAAAGTCAAGCCTTGATGATCCTACAGAGTCTGTTGGATTCCGACAAATTGGGAGTAGGCGGAAAAACAAGCCTCACCGAGCTGCTGAAGCTGGTGTTCAGTGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.26

Weight (kDa)

9.67

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccII CGCG 1 cut(s) 192
AciI CCGC 1 cut(s) 358
AclWI GGATC 3 cut(s) 50, 63, 311
AcsI RAATTY 1 cut(s) 262
AcuI CTGAAG 1 cut(s) 405
AgsI TTSAA 2 cut(s) 124, 268
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 66, 380, 389
AluI AGCT 3 cut(s) 66, 380, 389
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 2 cut(s) 132, 237
AlwI GGATC 3 cut(s) 50, 63, 311
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 262
AspLEI GCGC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 365
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 367
BccI CCATC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 132, 237
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 1 cut(s) 60
BmgBI CACGTC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 232, 264
BsaJI CCNNGG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 3 cut(s) 133, 175, 273
BseMII CTCAG 2 cut(s) 81, 164
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 132, 237
BsmBI CGTCTC 2 cut(s) 132, 237
BsnI GGCC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 55, 316
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 1 cut(s) 358
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 80, 163
BspFNI CGCG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 3 cut(s) 50, 63, 311
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 2 cut(s) 55, 316
Bst2UI CCWGG 1 cut(s) 60
Bst6I CTCTTC 2 cut(s) 94, 233
BstDEI CTNAG 2 cut(s) 67, 150
BstF5I GGATG 3 cut(s) 133, 175, 273
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 58, 319
BstMAI GTCTC 2 cut(s) 132, 237
BstMBI GATC 2 cut(s) 55, 316
BstMWI GCNNNNNNNGC 2 cut(s) 115, 386
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 367
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 109
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 3 cut(s) 133, 175, 273
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 404
BtuMI TCGCGA 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 1 cut(s) 49
CfoI GCGC 1 cut(s) 76
CseI GACGC 1 cut(s) 254
CviAII CATG 3 cut(s) 50, 251, 292
CviJI RGCY 7 cut(s) 66, 109, 118, 309, 370, 380, 389
CviKI_1 RGCY 7 cut(s) 66, 109, 118, 309, 370, 380, 389
DdeI CTNAG 2 cut(s) 67, 150
DpnI GATC 2 cut(s) 57, 318
DpnII GATC 2 cut(s) 55, 316
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 94, 233
EarI CTCTTC 2 cut(s) 94, 233
EciI GGCGGA 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 405
EcoICRI GAGCTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 68
Esp3I CGTCTC 2 cut(s) 132, 237
FaeI CATG 3 cut(s) 53, 254, 295
FaiI YATR 6 cut(s) 51, 78, 183, 218, 252, 293
FatI CATG 3 cut(s) 49, 250, 291
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 3 cut(s) 140, 182, 260
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 381
HaeIII GGCC 1 cut(s) 109
HgaI GACGC 1 cut(s) 254
HhaI GCGC 1 cut(s) 76
Hin1II CATG 3 cut(s) 53, 254, 295
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 3 cut(s) 82, 326, 336
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 3 cut(s) 70, 153, 341
Hpy188III TCNNGA 2 cut(s) 50, 191
HpyAV CCTTC 2 cut(s) 99, 118
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 386
HpyF3I CTNAG 2 cut(s) 67, 150
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 3 cut(s) 53, 254, 295
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 55, 316
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 4 cut(s) 45, 72, 79, 375
Lsp1109I GCAGC 1 cut(s) 367
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 198
MalI GATC 2 cut(s) 57, 318
MboI GATC 2 cut(s) 55, 316
MboII GAAGA 5 cut(s) 37, 111, 166, 206, 250
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 262, 345
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 313, 364
MnlI CCTC 5 cut(s) 46, 95, 160, 274, 381
MslI CAYNNNNRTG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 115, 386
NdeII GATC 2 cut(s) 55, 316
NlaIII CATG 3 cut(s) 53, 254, 295
NlaIV GGNNCC 1 cut(s) 57
NruI TCGCGA 1 cut(s) 192
PagI TCATGA 1 cut(s) 49
PfeI GAWTC 2 cut(s) 82, 336
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 55
RruI TCGCGA 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 255
SacI GAGCTC 1 cut(s) 68
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 2 cut(s) 55, 316
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 68
SetI ASST 5 cut(s) 13, 68, 201, 382, 391
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 255
Sse9I AATT 2 cut(s) 262, 345
SsiI CCGC 1 cut(s) 358
SspMI CTAG 1 cut(s) 213
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 58
TaiI ACGT 1 cut(s) 201
TasI AATT 2 cut(s) 262, 345
TfiI GAWTC 2 cut(s) 82, 336
TscAI CASTG 2 cut(s) 49, 404
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 2 cut(s) 49, 404
XapI RAATTY 1 cut(s) 262
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.