MD00G1084400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
16850198 .. 16853072
2875 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1084400.v1.1.491

Sequence Viewer

Length: 246 bp
ATGGGTAGAAGCAGAGGAAAAGCAAAGAAACAAAATGTTATTGCTGCTCATGAGGATACTGGAAGTGGTGAAGAGGAATGGATTCTACCAAGCAGGAGAAGAGGAAGGCCACAAAAGACATTGAAGGACGATATTGGAGAAGGAGAAGTGGCTTTGAAGACAGAAGATGGCGATGATGCAAAAGGTCATGTTTCAAGCAAAGACATGAAAGACCAATCTGCGATAGAGAATGGAAGGAAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.94

Weight (kDa)

9.05

Isoelectric Point (pI)

64.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 124, 157, 195
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 161
BciVI GTATCC 1 cut(s) 49
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 109
BsnI GGCC 1 cut(s) 109
BspANI GGCC 1 cut(s) 109
BspHI TCATGA 1 cut(s) 49
BsrI ACTGG 1 cut(s) 64
Bst6I CTCTTC 2 cut(s) 66, 94
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 164
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 186
CciI TCATGA 1 cut(s) 49
CviAII CATG 3 cut(s) 50, 188, 205
CviJI RGCY 2 cut(s) 109, 152
CviKI_1 RGCY 2 cut(s) 109, 152
Eam1104I CTCTTC 2 cut(s) 66, 94
EarI CTCTTC 2 cut(s) 66, 94
FaeI CATG 3 cut(s) 53, 191, 208
FaiI YATR 3 cut(s) 51, 189, 206
FatI CATG 3 cut(s) 49, 187, 204
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 3 cut(s) 53, 191, 208
HinfI GANTC 1 cut(s) 82
HphI GGTGA 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 50
HpyAV CCTTC 4 cut(s) 99, 118, 134, 228
HpyCH4V TGCA 1 cut(s) 179
Hsp92II CATG 3 cut(s) 53, 191, 208
LpnPI CCDG 2 cut(s) 45, 79
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 166
MboII GAAGA 4 cut(s) 83, 111, 169, 176
MnlI CCTC 4 cut(s) 8, 46, 67, 95
MroXI GAANNNNTTC 1 cut(s) 81
NlaIII CATG 3 cut(s) 53, 191, 208
PagI TCATGA 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 46
SatI GCNGC 1 cut(s) 45
SetI ASST 2 cut(s) 187, 245
SfaNI GCATC 1 cut(s) 166
SgeI CNNG 7 cut(s) 62, 72, 102, 106, 200, 207, 217
TfiI GAWTC 1 cut(s) 82
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.