Rh3BG264300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001497
Physical Location & Seq
Forward (+)
25603768 .. 25604175
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG264300.1

Sequence Viewer

Length: 408 bp
ATGGTTAGAGGTAGAGTAAAAGGGAAGAAACAAAACATTATCACTGCTTGCAAGGATCCTGGCAGCTCAGAAGGGCATAAGATTCCACCAAATAGGAGAAGAGGAAGGCCACAAAAGCCTTTGAAGGATGATATTGGAGAAGGAAAAACTCAGAAGATACAAGATGAGGATGAGAAAAGTCATATTTCTCGCGAAGTGGTGAAAAACCACTCTAGTATAGAGAATGGCATAAAAAGGAAGAGAGATGCTCATGTGAATGAAAATTTGAACTCCATCCAAGAGGAGAACAGCATGGAAATAAAGTCAAGCCTTGATGATCCTACAGAGTCTGTTGGATTCCGACAAAGTGGGAGTAGGCGGAAAAACAAGCCCCACCGAGCTGCTGAAGCTGGTGTTCAGTGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.19

Weight (kDa)

9.86

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 192
AciI CCGC 1 cut(s) 358
AclWI GGATC 3 cut(s) 50, 63, 311
AcsI RAATTY 1 cut(s) 262
AcuI CTGAAG 1 cut(s) 405
AgsI TTSAA 2 cut(s) 124, 268
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 66, 380, 389
AluI AGCT 3 cut(s) 66, 380, 389
AlwI GGATC 3 cut(s) 50, 63, 311
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 63, 380
ApoI RAATTY 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 211
BamHI GGATCC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 75, 367
BccI CCATC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 2 cut(s) 64, 381
BlsI GCNGC 2 cut(s) 65, 382
Bme1390I CCNGG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 232, 264
BseBI CCWGG 1 cut(s) 60
BseGI GGATG 3 cut(s) 133, 175, 273
BseMII CTCAG 2 cut(s) 81, 164
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 2 cut(s) 75, 367
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 109
BsnI GGCC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 55, 316
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 1 cut(s) 358
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 80, 163
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 3 cut(s) 50, 63, 311
BssMI GATC 2 cut(s) 55, 316
Bst2UI CCWGG 1 cut(s) 60
Bst6I CTCTTC 2 cut(s) 94, 233
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 67, 150
BstF5I GGATG 3 cut(s) 133, 175, 273
BstFNI CGCG 1 cut(s) 192
BstKTI GATC 2 cut(s) 58, 319
BstMBI GATC 2 cut(s) 55, 316
BstMWI GCNNNNNNNGC 2 cut(s) 115, 386
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 75, 367
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 109
BtsCI GGATG 3 cut(s) 133, 175, 273
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 404
BtuMI TCGCGA 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 329
CviAII CATG 2 cut(s) 251, 292
CviJI RGCY 7 cut(s) 66, 109, 118, 309, 370, 380, 389
CviKI_1 RGCY 7 cut(s) 66, 109, 118, 309, 370, 380, 389
DdeI CTNAG 2 cut(s) 67, 150
DpnI GATC 2 cut(s) 57, 318
DpnII GATC 2 cut(s) 55, 316
Eam1104I CTCTTC 2 cut(s) 94, 233
EarI CTCTTC 2 cut(s) 94, 233
EciI GGCGGA 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 254, 295
FaiI YATR 6 cut(s) 78, 183, 218, 230, 252, 293
FatI CATG 2 cut(s) 250, 291
Fnu4HI GCNGC 2 cut(s) 64, 381
FokI GGATG 3 cut(s) 140, 182, 260
Fsp4HI GCNGC 2 cut(s) 64, 381
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 64, 381
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 2 cut(s) 254, 295
HinfI GANTC 3 cut(s) 82, 326, 336
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 3 cut(s) 70, 153, 341
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 4 cut(s) 65, 99, 118, 134
HpyCH4V TGCA 2 cut(s) 51, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 386
HpyF3I CTNAG 2 cut(s) 67, 150
Hsp92II CATG 2 cut(s) 254, 295
Kzo9I GATC 2 cut(s) 55, 316
LpnPI CCDG 3 cut(s) 45, 72, 375
Lsp1109I GCAGC 2 cut(s) 75, 367
LweI GCATC 1 cut(s) 235
MaeI CTAG 1 cut(s) 213
MalI GATC 2 cut(s) 57, 318
MboI GATC 2 cut(s) 55, 316
MboII GAAGA 4 cut(s) 37, 111, 166, 250
MflI RGATCY 1 cut(s) 55
MluCI AATT 1 cut(s) 262
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 313, 364
MnlI CCTC 3 cut(s) 95, 160, 274
MslI CAYNNNNRTG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 115, 386
NdeII GATC 2 cut(s) 55, 316
NlaIII CATG 2 cut(s) 254, 295
NlaIV GGNNCC 1 cut(s) 57
NruI TCGCGA 1 cut(s) 192
PfeI GAWTC 2 cut(s) 82, 336
PkrI GCNGC 2 cut(s) 65, 382
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 55
RruI TCGCGA 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 255
SatI GCNGC 2 cut(s) 64, 381
Sau3AI GATC 2 cut(s) 55, 316
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 60
SetI ASST 4 cut(s) 13, 68, 382, 391
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 255
Sse9I AATT 1 cut(s) 262
SsiI CCGC 1 cut(s) 358
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 58
TasI AATT 1 cut(s) 262
TfiI GAWTC 2 cut(s) 82, 336
TscAI CASTG 2 cut(s) 49, 404
TseI GCWGC 2 cut(s) 63, 380
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 2 cut(s) 49, 404
XapI RAATTY 1 cut(s) 262
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.