MD03G1021700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0001497
Physical Location & Seq
Reverse (-)
1730098 .. 1732074
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1021700.v1.1.491

Sequence Viewer

Length: 414 bp
ATGGGTAGAGGTAGAGGAAAGGGAAAGAGGTTAACTGTCAACAATCATGATGATCCTGGAAGTGGTGAGGAAGAAAAAATACCGGCACAAAAGAGAAGGGGAAGGCCTCAAAAGCCATTAAAAGATGAGATTGATGAAGAAGAAGCTGAACGAATAGACGCAGATGATAGTGAGAATGGAAAGTCTGGTATCTCAAGCAAGGAGGTAAAAAGCCCCTCTGCTTCAGAGAATGGTAAGAAGAGGAAGCGGCAATCACAGGTGAAGGAGAAGTCAGATTCAGTTAAGGAGGAAAATGGTAATGGAACAAGATCAAGCACTGATGACTCAACTAAGTCTAATGGATTTCGGCATAATGGGAGCAGGCGGAAAAACAAGCCCCGTCGAGCAGCTGAAGCTGGTGTTGAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.12

Weight (kDa)

9.68

Isoelectric Point (pI)

63.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 247, 364
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 2 cut(s) 207, 411
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 404
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 3 cut(s) 146, 389, 395
AluI AGCT 3 cut(s) 146, 389, 395
AlwI GGATC 1 cut(s) 47
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 77, 271
BarI GAAGNNNNNNTAC 2 cut(s) 63, 95
BbvI GCAGC 1 cut(s) 398
BciT130I CCWGG 1 cut(s) 57
BisI GCNGC 2 cut(s) 248, 387
BlsI GCNGC 2 cut(s) 249, 388
Bme1390I CCNGG 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 82
BseBI CCWGG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 398
BshFI GGCC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 62
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 52, 308
BspACI CCGC 2 cut(s) 247, 364
BspANI GGCC 1 cut(s) 106
BspHI TCATGA 1 cut(s) 46
BspPI GGATC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
BssMI GATC 2 cut(s) 52, 308
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 1 cut(s) 330
BstKTI GATC 2 cut(s) 55, 311
BstMBI GATC 2 cut(s) 52, 308
BstMWI GCNNNNNNNGC 2 cut(s) 112, 392
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 398
BsuRI GGCC 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 362
CciI TCATGA 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 82
CseI GACGC 1 cut(s) 167
CviAII CATG 1 cut(s) 47
CviJI RGCY 7 cut(s) 106, 115, 146, 213, 376, 389, 395
CviKI_1 RGCY 7 cut(s) 106, 115, 146, 213, 376, 389, 395
DdeI CTNAG 1 cut(s) 330
DpnI GATC 2 cut(s) 54, 310
DpnII GATC 2 cut(s) 52, 308
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
EciI GGCGGA 1 cut(s) 379
Eco147I AGGCCT 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 207, 411
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 1 cut(s) 50
FaiI YATR 2 cut(s) 48, 351
FatI CATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 248, 387
Fsp4HI GCNGC 2 cut(s) 248, 387
GluI GCNGC 2 cut(s) 248, 387
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 50
HincII GTYRAC 2 cut(s) 33, 40
HindII GTYRAC 2 cut(s) 33, 40
HinfI GANTC 2 cut(s) 275, 323
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 77, 271
Hpy166II GTNNAC 2 cut(s) 33, 40
Hpy188I TCNGA 2 cut(s) 226, 274
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 2 cut(s) 33, 40
Hpy99I CGWCG 1 cut(s) 384
HpyAV CCTTC 3 cut(s) 90, 96, 256
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 408
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 392
HpyF3I CTNAG 1 cut(s) 330
Hsp92II CATG 1 cut(s) 50
KspAI GTTAAC 1 cut(s) 33
Kzo9I GATC 2 cut(s) 52, 308
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 7 cut(s) 42, 69, 96, 171, 242, 346, 381
Lsp1109I GCAGC 1 cut(s) 398
MalI GATC 2 cut(s) 54, 310
MboI GATC 2 cut(s) 52, 308
MboII GAAGA 4 cut(s) 83, 149, 152, 250
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 8 cut(s) 8, 21, 61, 117, 196, 226, 234, 280
MseI TTAA 3 cut(s) 32, 119, 282
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 410
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 112, 392
NdeII GATC 2 cut(s) 52, 308
NlaIII CATG 1 cut(s) 50
PagI TCATGA 1 cut(s) 46
PceI AGGCCT 1 cut(s) 106
PctI GAATGC 1 cut(s) 410
PfeI GAWTC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 2 cut(s) 249, 388
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 389
SaqAI TTAA 3 cut(s) 32, 119, 282
SatI GCNGC 2 cut(s) 248, 387
Sau3AI GATC 2 cut(s) 52, 308
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 57
SetI ASST 7 cut(s) 13, 32, 148, 207, 261, 391, 397
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 2 cut(s) 247, 364
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 382
TauI GCSGC 1 cut(s) 250
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 3 cut(s) 32, 119, 282
Tru9I TTAA 3 cut(s) 32, 119, 282
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.