Prupe.6G020200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001497
Physical Location & Seq
Reverse (-)
1610260 .. 1615376
5117 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G020200.1

Sequence Viewer

Length: 414 bp
ATGGGTAGAGGTAGAGGAAAGGGAAAGAGGTTGACTGTCACCAATCATGACGATCCTGGAAGTGGTGAGGAAGAAAAAATACCTGCACAAAAGAGAAGGGGAAGGCCTCAAAAACCCTTAAAAGATGAGATTGATGAAGAAGAAACTGATAAAATAGAGGCAGATGATAGTGAGAATGGAAAGGCTGGTATTGCAAGCAAGGAGATCAAAAGCCCCTCTGTGGCAGAGAATGGTAAGAAGAGGAAGCGGTACTCACAGGTGAAGGAGAAGTCAGATTCGGTTAAGGAGGAAAATGGTATTGGGACACGATCAAGCACCGATGACTCAACTAAGTCTAATGGATTTCGGCATAATGGGAGCAGACGGAAAAACAAGCCCCGTCGAGCTGCTGAAGCCGGTGTTGAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.13

Weight (kDa)

9.62

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 91
AciI CCGC 1 cut(s) 247
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 62, 220
AgsI TTSAA 1 cut(s) 404
AjnI CCWGG 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
AlwI GGATC 1 cut(s) 47
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 386
AsuHPI GGTGA 3 cut(s) 31, 77, 271
BarI GAAGNNNNNNTAC 2 cut(s) 63, 95
BbvI GCAGC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 91
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 220
Bse118I RCCGGY 1 cut(s) 395
BseBI CCWGG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 62, 220
BseXI GCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 62, 220
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 1 cut(s) 106
Bsp143I GATC 3 cut(s) 52, 204, 308
BspACI CCGC 1 cut(s) 247
BspANI GGCC 1 cut(s) 106
BspHI TCATGA 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 395
BssMI GATC 3 cut(s) 52, 204, 308
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 330
BstKTI GATC 3 cut(s) 55, 207, 311
BstMBI GATC 3 cut(s) 52, 204, 308
BstMWI GCNNNNNNNGC 2 cut(s) 191, 392
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 373
BsuRI GGCC 1 cut(s) 106
BveI ACCTGC 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 196
CciI TCATGA 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 395
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 47
CviJI RGCY 6 cut(s) 106, 185, 213, 376, 386, 395
CviKI_1 RGCY 6 cut(s) 106, 185, 213, 376, 386, 395
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 330
DpnI GATC 3 cut(s) 54, 206, 310
DpnII GATC 3 cut(s) 52, 204, 308
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 1 cut(s) 50
FaiI YATR 2 cut(s) 48, 351
FaqI GGGAC 1 cut(s) 316
FatI CATG 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 396
Hin1II CATG 1 cut(s) 50
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 2 cut(s) 275, 323
HpaII CCGG 1 cut(s) 396
HphI GGTGA 3 cut(s) 31, 77, 271
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 1 cut(s) 384
HpyAV CCTTC 3 cut(s) 90, 96, 256
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 86, 194, 408
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 392
HpyF3I CTNAG 1 cut(s) 330
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 3 cut(s) 52, 204, 308
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 6 cut(s) 42, 69, 96, 171, 242, 409
Lsp1109I GCAGC 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 37
MalI GATC 3 cut(s) 54, 206, 310
MboI GATC 3 cut(s) 52, 204, 308
MboII GAAGA 4 cut(s) 83, 149, 152, 250
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 8 cut(s) 8, 21, 61, 117, 151, 226, 234, 280
MseI TTAA 2 cut(s) 119, 282
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 410
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 191, 392
NdeII GATC 3 cut(s) 52, 204, 308
NlaIII CATG 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 37
PagI TCATGA 1 cut(s) 46
PceI AGGCCT 1 cut(s) 106
PctI GAATGC 1 cut(s) 410
PfeI GAWTC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 2 cut(s) 119, 282
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 3 cut(s) 52, 204, 308
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 57
SetI ASST 5 cut(s) 13, 32, 85, 261, 388
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 1 cut(s) 247
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 382
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 2 cut(s) 119, 282
Tru9I TTAA 2 cut(s) 119, 282
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 150
TspGWI ACGGA 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.