Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001497

Physical Location & Seq

Genomic Coordinates Forward (+)

25929313 .. 25932775

Gene Structure 3463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44521

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTTAGAGGTAGGGTAAAAGGGAAGAAACAAAACATTATCACTGCTCGCGAGGATCCTGGGAGCTCAGAAGGGCATAAGATTCCACCAAATAGGAGAAGAGGAAGGCCACAAAAGCCTTTGAAGGATGATATTGGAGAAGGAAAAACTCAGAAGATACAAGATGAGGATGAGAAAAGTCATATTTCTCGTGAAGTCGTGAAAACCCACTCTAGTATAGAGAATGGCACAAAAAGGAAGAGAGATGCTCATGTGAATGAAAATTTGAACTCCATCCAAGAGGAGAACAGCATGGAAATAAAGTCAAGCCTTGATAATCCTACAGAGTCTGTTGGATTCCGACAAAGTGGGAGTAGGCGGAAAAACAAGCCTCACCGAGCTGCTGAAGCTGGTGTTCAGTGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.21

Weight (kDa)

10.0

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42190 AT2G42190 AT2G42190 AT3G57930 AT3G57930
fragaria_vesca	FvH4_3g43480 FvH4_6g22620 FvH4_6g47460
malus_domestica	MD00G1084400.v1.1 MD03G1021700.v1.1 MD11G1024200.v1.1 MD12G1058100.v1.1 MD14G1059900.v1.1
prunus_persica	Prupe.6G020200_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1 Prupe.7G074700_v2.0.a1
pyrus_communis	pycom03g01840 pycom11g01910 pycom12g05310 pycom14g04860
rosa_chinensis	RchiOBHm_Chr3g0480181 RchiOBHm_Chr5g0077891
rosa_laevigata	RLG00000023514 RLG00000036723
rosa_multiflora	Rmu_sc0020879.1_g000004 Rmu_ssc0000186.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004290 Rroxscaffold_6G00401740
rosa_rugosa	Rorug03G0180800 Rorug03G0180800 Rorug05G0457000 Rorug05G0457000 Rorug05G0457000
rosa_samantha	Rh3AG232600 Rh3BG264300 Rh3CG262300 Rh3DG258000 Rh5AG511500 Rh5BG534200 Rh5CG557700 Rh5DG545600
rosa_wichuraiana	Rw3G020870 Rw5G047460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	51
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	2 cut(s)	50, 63
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	405
AgsI	TTSAA	2 cut(s)	124, 268
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	66, 380, 389
AluI	AGCT	3 cut(s)	66, 380, 389
Alw21I	GWGCWC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	50, 63
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BsaJI	CCNNGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	3 cut(s)	133, 175, 273
BseMII	CTCAG	2 cut(s)	81, 164
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	55
Bsp68I	TCGCGA	1 cut(s)	51
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	80, 163
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	50, 63
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	55
BssSI	CACGAG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	94, 233
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	67, 150
BstF5I	GGATG	3 cut(s)	133, 175, 273
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 386
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	133, 175, 273
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 404
BtuMI	TCGCGA	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	329
CviAII	CATG	2 cut(s)	251, 292
CviJI	RGCY	7 cut(s)	66, 109, 118, 309, 370, 380, 389
CviKI_1	RGCY	7 cut(s)	66, 109, 118, 309, 370, 380, 389
DdeI	CTNAG	2 cut(s)	67, 150
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	94, 233
EarI	CTCTTC	2 cut(s)	94, 233
EciI	GGCGGA	1 cut(s)	373
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	2 cut(s)	254, 295
FaiI	YATR	5 cut(s)	78, 183, 218, 252, 293
FatI	CATG	2 cut(s)	250, 291
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	3 cut(s)	140, 182, 260
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	254, 295
HinfI	GANTC	3 cut(s)	82, 326, 336
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	3 cut(s)	70, 153, 341
Hpy188III	TCNNGA	3 cut(s)	50, 191, 199
HpyAV	CCTTC	4 cut(s)	65, 99, 118, 134
HpyCH4V	TGCA	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 386
HpyF3I	CTNAG	2 cut(s)	67, 150
Hsp92II	CATG	2 cut(s)	254, 295
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	3 cut(s)	45, 72, 375
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	213
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	4 cut(s)	37, 111, 166, 250
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	313, 364
MnlI	CCTC	5 cut(s)	46, 95, 160, 274, 381
MslI	CAYNNNNRTG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	115, 386
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	254, 295
NlaIV	GGNNCC	1 cut(s)	57
NruI	TCGCGA	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	82, 336
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	55
RruI	TCGCGA	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	68
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	4 cut(s)	13, 68, 382, 391
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	358
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	58
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	82, 336
TscAI	CASTG	2 cut(s)	49, 404
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	2 cut(s)	49, 404
XapI	RAATTY	1 cut(s)	262
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.