MD12G1058100.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
6662730 .. 6665044
2315 bp
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UTR
Exon/CDS
Intron
MD12G1058100.v1.1.491

Sequence Viewer

Length: 414 bp
ATGGGTAGAGGGAGAGGAAAAGCAAAGAAACAAAATGTTATTGCTGCTCGTGAGGATACTGGAAGTGGTGAAGAGGAAAGGATTCTACCAAGCAGGAGAAGAGGAAGGCCACAAAAGACATTGAAGGACGATATTGTAGAAGGAGAAGAGGCTCTGAAGACAGAAGATGGCGAGGATGCAAAAAGTCATGTTTCGAGCAAAGACATGAAAGGCCAATCTGCCATAGAGAATGGAAGGAAAAGGAAGAGGTCAGCTCAGGTCAAAGAAACTGTAAAATCAGTCAAAGAGGATAAAATGATTGAAACAAAATCAACTCTCGATGACCCGAAAAAGTCTGTTGGATTCCGACAAAATGGGAGTAGGCGGAAAAATAAGCCACACCGAGCTGCTGAAGCTGGTGTTGAGTGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.26

Weight (kDa)

9.91

Isoelectric Point (pI)

61.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 364
AcuI CTGAAG 2 cut(s) 176, 411
AgsI TTSAA 2 cut(s) 124, 302
AluBI AGCT 3 cut(s) 254, 386, 395
AluI AGCT 3 cut(s) 254, 386, 395
AoxI GGCC 2 cut(s) 107, 211
ApeKI GCWGC 2 cut(s) 44, 386
Asp700I GAANNNNTTC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 80
BauI CACGAG 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 31, 373
BccI CCATC 1 cut(s) 161
BciVI GTATCC 1 cut(s) 49
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 2 cut(s) 45, 387
BlsI GCNGC 2 cut(s) 46, 388
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 238, 270
Bpu10I CCTNAGC 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 31, 373
BshFI GGCC 2 cut(s) 109, 213
BsnI GGCC 2 cut(s) 109, 213
BspACI CCGC 1 cut(s) 364
BspANI GGCC 2 cut(s) 109, 213
BspCNI CTCAG 1 cut(s) 268
BsrI ACTGG 1 cut(s) 64
BssSI CACGAG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 4 cut(s) 66, 94, 141, 239
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstV1I GCAGC 2 cut(s) 31, 373
BstV2I GAAGAC 1 cut(s) 164
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 109, 213
BtsCI GGATG 1 cut(s) 181
CviAII CATG 2 cut(s) 188, 205
CviJI RGCY 7 cut(s) 109, 152, 213, 254, 376, 386, 395
CviKI_1 RGCY 7 cut(s) 109, 152, 213, 254, 376, 386, 395
DdeI CTNAG 1 cut(s) 255
Eam1104I CTCTTC 4 cut(s) 66, 94, 141, 239
EarI CTCTTC 4 cut(s) 66, 94, 141, 239
EciI GGCGGA 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 176, 411
FaeI CATG 2 cut(s) 191, 208
FaiI YATR 3 cut(s) 189, 206, 224
FatI CATG 2 cut(s) 187, 204
Fnu4HI GCNGC 2 cut(s) 45, 387
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 45, 387
GluI GCNGC 2 cut(s) 45, 387
HaeIII GGCC 2 cut(s) 109, 213
Hin1II CATG 2 cut(s) 191, 208
HinfI GANTC 2 cut(s) 82, 342
HphI GGTGA 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 156, 347
Hpy188III TCNNGA 2 cut(s) 50, 317
HpyAV CCTTC 4 cut(s) 99, 118, 134, 228
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 2 cut(s) 191, 208
LpnPI CCDG 4 cut(s) 45, 79, 242, 381
Lsp1109I GCAGC 2 cut(s) 31, 373
LweI GCATC 1 cut(s) 166
MboII GAAGA 6 cut(s) 83, 111, 158, 169, 176, 256
MmeI TCCRAC 2 cut(s) 319, 370
MnlI CCTC 8 cut(s) 8, 46, 67, 95, 142, 166, 240, 280
MroXI GAANNNNTTC 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 392
NlaIII CATG 2 cut(s) 191, 208
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 82, 342
PkrI GCNGC 2 cut(s) 46, 388
SatI GCNGC 2 cut(s) 45, 387
SetI ASST 5 cut(s) 251, 256, 261, 388, 397
SfaNI GCATC 1 cut(s) 166
SsiI CCGC 1 cut(s) 364
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 194, 318
TfiI GAWTC 2 cut(s) 82, 342
TseI GCWGC 2 cut(s) 44, 386
TspDTI ATGAA 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.