FvH4_6g47972

Belongs to the glycosyltransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007500
Physical Location & Seq
Forward (+)
36232843 .. 36233476
634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47972.t1

Sequence Viewer

Length: 444 bp
ATGGTGAACCAAATTGAAGAAGATTTGAAATCAAGCAATTCCCATTGCATTTCATACTTAATCAAGGATCCTAGTAAGGCAAGGAAAGTTGATGATTTAAGGCAGAAACTCAGGACGCGCGGACTACGCTGCCATCCAATGTACTGCAGGAGCTCAACAAGAATGCAAATTGTTCCGCTCCTTGCTTCTCGAGCACAGGCTCTCAGGTATCTTTTTGTACGCTGGAGATTGAATGTCGCAAACGTGTACGTGTTCCTTGGAGAAAGTGGGGACACCGATTATGAAGAAATGATTGCAGGGACTCACAAGACCATAATCATGAAAGGGGTGGTGGGAAAGGGTTCTGAAGAGCTGCTAAACATCAGGAAGCTATGTGAGAGACGACATTGTTCCTCCTCAGTGCCCATTGGTCGCCATTGTAAATGGGCAAGCTCCAACAGCTGA

Protein Analysis

148

Amino Acids

16.84

Weight (kDa)

9.69

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S6PP PF05116 11 - 119 2.7e-12 Sucrose-6F-phosphate phosphohydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 178
AccII CGCG 2 cut(s) 118, 120
AciI CCGC 2 cut(s) 120, 176
AclWI GGATC 2 cut(s) 62, 75
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 3 cut(s) 143, 219, 248
AflIII ACRYGT 2 cut(s) 243, 249
AgsI TTSAA 3 cut(s) 17, 28, 232
AluBI AGCT 5 cut(s) 153, 352, 370, 432, 441
AluI AGCT 5 cut(s) 153, 352, 370, 432, 441
Alw21I GWGCWC 2 cut(s) 155, 196
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 2 cut(s) 62, 75
Ama87I CYCGRG 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 129, 352
Asp700I GAANNNNTTC 1 cut(s) 340
AspLEI GCGC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 405
BamHI GGATCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 155, 196
BbvI GCAGC 2 cut(s) 116, 339
BccI CCATC 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 145
BisI GCNGC 2 cut(s) 130, 353
BlsI GCNGC 2 cut(s) 131, 354
BmeT110I CYCGRG 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 244
BsaAI YACGTR 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 3 cut(s) 124, 217, 411
BseRI GAGGAG 1 cut(s) 385
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 2 cut(s) 116, 339
Bsh1236I CGCG 2 cut(s) 118, 120
BsiHKAI GWGCWC 2 cut(s) 155, 196
BsiHKCI CYCGRG 1 cut(s) 189
BslFI GGGAC 2 cut(s) 284, 313
BsmAI GTCTC 1 cut(s) 373
BsmBI CGTCTC 1 cut(s) 373
BsmFI GGGAC 2 cut(s) 284, 313
BsmI GAATGC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 3 cut(s) 155, 196, 405
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 2 cut(s) 120, 176
BspCNI CTCAG 3 cut(s) 123, 216, 410
BspFNI CGCG 2 cut(s) 118, 120
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 149
BspPI GGATC 2 cut(s) 62, 75
BspQI GCTCTTC 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 3 cut(s) 110, 203, 397
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 2 cut(s) 118, 120
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 3 cut(s) 126, 191, 438
BstSFI CTRYAG 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 2 cut(s) 118, 120
BstV1I GCAGC 2 cut(s) 116, 339
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 430
CciI TCATGA 1 cut(s) 318
CfoI GCGC 1 cut(s) 120
CseI GACGC 1 cut(s) 124
Csp6I GTAC 3 cut(s) 142, 218, 247
CviAII CATG 1 cut(s) 319
CviJI RGCY 6 cut(s) 153, 200, 352, 370, 432, 441
CviKI_1 RGCY 6 cut(s) 153, 200, 352, 370, 432, 441
CviQI GTAC 3 cut(s) 142, 218, 247
DdeI CTNAG 3 cut(s) 110, 203, 397
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 1 cut(s) 322
FaiI YATR 5 cut(s) 55, 282, 314, 320, 373
FaqI GGGAC 2 cut(s) 284, 313
FatI CATG 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 130, 353
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 130, 353
FspBI CTAG 1 cut(s) 72
GlaI GCGC 1 cut(s) 119
GluI GCNGC 2 cut(s) 130, 353
GsuI CTGGAG 1 cut(s) 244
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 1 cut(s) 301
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 7, 247
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 4 cut(s) 112, 189, 319, 364
Hpy8I GTNNAC 2 cut(s) 7, 247
HpyCH4IV ACGT 2 cut(s) 243, 249
HpyCH4V TGCA 4 cut(s) 48, 147, 166, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 191, 438
HpyF3I CTNAG 3 cut(s) 110, 203, 397
HpySE526I ACGT 2 cut(s) 243, 249
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 67
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 3 cut(s) 150, 183, 437
LpnPI CCDG 7 cut(s) 97, 133, 182, 190, 208, 282, 349
Lsp1109I GCAGC 2 cut(s) 116, 339
MaeI CTAG 1 cut(s) 72
MaeII ACGT 2 cut(s) 243, 249
MalI GATC 1 cut(s) 69
MbiI CCGCTC 1 cut(s) 178
MboI GATC 1 cut(s) 67
MboII GAAGA 4 cut(s) 29, 32, 296, 359
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 3 cut(s) 155, 196, 405
MluCI AATT 3 cut(s) 12, 37, 168
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 2 cut(s) 403, 406
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 2 cut(s) 59, 98
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 441
Mva1269I GAATGC 1 cut(s) 168
MvnI CGCG 2 cut(s) 118, 120
MwoI GCNNNNNNNGC 3 cut(s) 126, 191, 438
NdeII GATC 1 cut(s) 67
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 1 cut(s) 69
PaeR7I CTCGAG 1 cut(s) 189
PagI TCATGA 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 342
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 131, 354
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Ppu21I YACGTR 1 cut(s) 250
Psp124BI GAGCTC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 69
PstI CTGCAG 1 cut(s) 149
PsuI RGATCY 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 441
RsaI GTAC 3 cut(s) 143, 219, 248
RsaNI GTAC 3 cut(s) 142, 218, 247
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 2 cut(s) 59, 98
SatI GCNGC 2 cut(s) 130, 353
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 295
SduI GDGCHC 3 cut(s) 155, 196, 405
SetI ASST 8 cut(s) 155, 209, 246, 252, 354, 372, 434, 443
SfcI CTRYAG 1 cut(s) 145
Sfr274I CTCGAG 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 3 cut(s) 12, 37, 168
SsiI CCGC 2 cut(s) 120, 176
SspMI CTAG 1 cut(s) 72
SstI GAGCTC 1 cut(s) 155
StyI CCWWGG 1 cut(s) 256
TaiI ACGT 2 cut(s) 246, 252
TaqI TCGA 1 cut(s) 190
TasI AATT 3 cut(s) 12, 37, 168
TatI WGTACW 1 cut(s) 141
Tru1I TTAA 2 cut(s) 59, 98
Tru9I TTAA 2 cut(s) 59, 98
TscAI CASTG 1 cut(s) 405
TseI GCWGC 2 cut(s) 129, 352
TspDTI ATGAA 3 cut(s) 42, 297, 335
TspRI CASTG 1 cut(s) 405
XhoI CTCGAG 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.