Rw4G015780

Belongs to the glycosyltransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007500
Physical Location & Seq
Forward (+)
36161247 .. 36161731
485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015780.1

Sequence Viewer

Length: 384 bp
ATGCGGGGACTACGCTGCCATCCAATGTACTGCAGGAGCTCAACGCGAATGCAAATTGTTCCCCTCCTTGCTTCTCGAGCACAGGCTCTCAGGTACCTTTTCGTACGCTGGAGATTGAATGTCGCAAACATGTATGTGTTCCTTGGAGAAAGTGGAGACACTGATTATGAAGAAATGATAGCAGGGACTCACAAGACCATAATCATGAAAGGGGTGGTGGGAAAGGGTTCTGAAGAGCTGCTAAGAACATCAGGAAGCTACCTGAGAGACGACATTGTTCCTCCTCAGAGCCCACTGGTCGCCATCGTAAATGGGCAAGCTCCAACAGCTGATGAGATTGCCACTGCTCTGAAGCAAGTCACCAAATCTGCTGCTGGAATGTGA

Protein Analysis

127

Amino Acids

13.99

Weight (kDa)

9.3

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S6PP PF05116 2 - 82 1e-05 Sucrose-6F-phosphate phosphohydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 93
AccII CGCG 1 cut(s) 46
AciI CCGC 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 252, 371
AfaI GTAC 3 cut(s) 29, 95, 105
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 5 cut(s) 39, 238, 258, 320, 329
AluI AGCT 5 cut(s) 39, 238, 258, 320, 329
Alw21I GWGCWC 2 cut(s) 41, 82
Alw26I GTCTC 2 cut(s) 150, 261
Ama87I CYCGRG 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 15, 238, 371
Asp700I GAANNNNTTC 1 cut(s) 226
Asp718I GGTACC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 75
BanI GGYRCC 1 cut(s) 93
BanII GRGCYC 2 cut(s) 41, 293
Bbv12I GWGCWC 2 cut(s) 41, 82
BbvI GCAGC 3 cut(s) 2, 225, 358
BccI CCATC 2 cut(s) 27, 311
BcoDI GTCTC 2 cut(s) 150, 261
BfmI CTRYAG 1 cut(s) 31
BisI GCNGC 3 cut(s) 16, 239, 372
BlsI GCNGC 3 cut(s) 17, 240, 373
BmeT110I CYCGRG 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 3 cut(s) 103, 254, 299
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 3 cut(s) 2, 225, 358
Bsh1236I CGCG 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 93
BsiHKAI GWGCWC 2 cut(s) 41, 82
BsiHKCI CYCGRG 1 cut(s) 75
BsiWI CGTACG 1 cut(s) 103
BslFI GGGAC 2 cut(s) 21, 199
BsmAI GTCTC 2 cut(s) 150, 261
BsmBI CGTCTC 1 cut(s) 261
BsmFI GGGAC 2 cut(s) 21, 199
BsmI GAATGC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 3 cut(s) 41, 82, 293
BspACI CCGC 1 cut(s) 4
BspCNI CTCAG 3 cut(s) 102, 255, 298
BspFNI CGCG 1 cut(s) 46
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 35
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 93
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 4 cut(s) 89, 242, 263, 285
BstF5I GGATG 1 cut(s) 19
BstFNI CGCG 1 cut(s) 46
BstMAI GTCTC 2 cut(s) 150, 261
BstMWI GCNNNNNNNGC 2 cut(s) 77, 326
BstNSI RCATGY 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 31
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 3 cut(s) 2, 225, 358
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 159, 293, 342
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 204
Csp6I GTAC 3 cut(s) 28, 94, 104
CviAII CATG 2 cut(s) 130, 205
CviJI RGCY 7 cut(s) 39, 86, 238, 258, 291, 320, 329
CviKI_1 RGCY 7 cut(s) 39, 86, 238, 258, 291, 320, 329
CviQI GTAC 3 cut(s) 28, 94, 104
DdeI CTNAG 4 cut(s) 89, 242, 263, 285
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 142
Eco24I GRGCYC 2 cut(s) 41, 293
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 2 cut(s) 252, 371
Eco88I CYCGRG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 142
EcoT38I GRGCYC 2 cut(s) 41, 293
ErhI CCWWGG 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 2 cut(s) 133, 208
FaiI YATR 5 cut(s) 131, 135, 168, 200, 206
FaqI GGGAC 2 cut(s) 21, 199
FatI CATG 2 cut(s) 129, 204
Fnu4HI GCNGC 3 cut(s) 16, 239, 372
FokI GGATG 1 cut(s) 6
FriOI GRGCYC 2 cut(s) 41, 293
Fsp4HI GCNGC 3 cut(s) 16, 239, 372
GluI GCNGC 3 cut(s) 16, 239, 372
GsuI CTGGAG 1 cut(s) 130
Hin1II CATG 2 cut(s) 133, 208
HinfI GANTC 1 cut(s) 187
HphI GGTGA 1 cut(s) 352
Hpy188I TCNGA 3 cut(s) 232, 288, 351
Hpy188III TCNNGA 3 cut(s) 75, 205, 252
HpyCH4V TGCA 2 cut(s) 33, 52
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 326
HpyF3I CTNAG 4 cut(s) 89, 242, 263, 285
Hsp92II CATG 2 cut(s) 133, 208
KpnI GGTACC 1 cut(s) 97
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 2 cut(s) 36, 325
LpnPI CCDG 9 cut(s) 19, 68, 76, 94, 168, 237, 275, 281, 360
Lsp1109I GCAGC 3 cut(s) 2, 225, 358
MaeIII GTNAC 1 cut(s) 358
MboII GAAGA 2 cut(s) 182, 245
MhlI GDGCHC 3 cut(s) 41, 82, 293
MluCI AATT 1 cut(s) 54
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 3 cut(s) 74, 291, 294
MroXI GAANNNNTTC 1 cut(s) 226
MslI CAYNNNNRTG 2 cut(s) 134, 203
MspA1I CMGCKG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 54
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 77, 326
NlaIII CATG 2 cut(s) 133, 208
NlaIV GGNNCC 1 cut(s) 95
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 1 cut(s) 133
PaeR7I CTCGAG 1 cut(s) 75
PagI TCATGA 1 cut(s) 204
PciI ACATGT 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 228
PctI GAATGC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 226
Pfl23II CGTACG 1 cut(s) 103
PkrI GCNGC 3 cut(s) 17, 240, 373
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 41
PspLI CGTACG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 3 cut(s) 29, 95, 105
RsaNI GTAC 3 cut(s) 28, 94, 104
RseI CAYNNNNRTG 2 cut(s) 134, 203
SacI GAGCTC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 228
SatI GCNGC 3 cut(s) 16, 239, 372
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 3 cut(s) 41, 82, 293
SetI ASST 8 cut(s) 41, 95, 99, 240, 260, 264, 322, 331
SfcI CTRYAG 1 cut(s) 31
Sfr274I CTCGAG 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 2 cut(s) 134, 203
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 1 cut(s) 54
SsiI CCGC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 41
StyI CCWWGG 1 cut(s) 142
TaqI TCGA 1 cut(s) 76
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 27
TscAI CASTG 3 cut(s) 166, 300, 349
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 3 cut(s) 15, 238, 371
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 183, 221
TspRI CASTG 3 cut(s) 166, 300, 349
XceI RCATGY 1 cut(s) 133
XhoI CTCGAG 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.