Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007500

Physical Location & Seq

Genomic Coordinates Forward (+)

35828664 .. 35829148

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG180500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCGCGAACTACGCTGCCATCCAATGTACTGCAGGAGCTCAACGCGAATGCAAATTGTTCCTCTCCTTGCTTCTCGAGCACAGGCTCTCAGGTACCTTTTTGTAAGCTGGAGATTGAATGTCACAAAAATGTATGTGTTCCTTGGAGAAAGTGGAGACACCGATTATGAAGAAATAATAGCAGGGACTCACAAGACCATAATCATGAAAGGGGTGGTGGGAAAGGGTTCTGAAGAGCTGCTAAGAACATCAGGAAGCTTCCTGAGAGACGACATTGTTCCTCCTCAGAGCCCACTGGTTGCCATTGTAAATGAGCAAGCTCCAACAGCTGATGAGATTGCCACTGCTCTGAAGCAAGTCACCAAATCTGCTGCTGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046524 GO:0046527

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

127

Amino Acids

14.07

Weight (kDa)

8.64

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007500)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13520 FvH4_4g13520 FvH4_6g47971 FvH4_6g47972 FvH4_6g48814
rosa_laevigata	RLG00000008161 RLG00000008164
rosa_multiflora	Rmu_sc0000808.1_g000028 Rmu_sc0010419.1_g000002 Rmu_sc0010419.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121520
rosa_rugosa	Rorug04G0055100 Rorug07G0176500
rosa_samantha	Rh4CG197100 Rh4CG197400 Rh4DG180200 Rh4DG180500 Rh4DG181100 Rh7AG324900 Rh7AG325000 Rh7AG341000 Rh7CG341800 Rh7CG341900 Rh7CG358700
rosa_wichuraiana	Rw4G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	93
AccII	CGCG	2 cut(s)	6, 46
AcuI	CTGAAG	2 cut(s)	252, 371
AfaI	GTAC	2 cut(s)	29, 95
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	6 cut(s)	39, 108, 238, 258, 320, 329
AluI	AGCT	6 cut(s)	39, 108, 238, 258, 320, 329
Alw21I	GWGCWC	2 cut(s)	41, 82
Alw26I	GTCTC	2 cut(s)	150, 261
Ama87I	CYCGRG	1 cut(s)	75
ApeKI	GCWGC	3 cut(s)	15, 238, 371
Asp700I	GAANNNNTTC	1 cut(s)	226
Asp718I	GGTACC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	41, 293
Bbv12I	GWGCWC	2 cut(s)	41, 82
BbvI	GCAGC	3 cut(s)	2, 225, 358
BccI	CCATC	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	150, 261
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	3 cut(s)	16, 239, 372
BlsI	GCNGC	3 cut(s)	17, 240, 373
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	1 cut(s)	19
BseMII	CTCAG	3 cut(s)	103, 254, 299
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	3 cut(s)	2, 225, 358
Bsh1236I	CGCG	2 cut(s)	6, 46
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	41, 82
BsiHKCI	CYCGRG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	150, 261
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	41, 82, 293
BspCNI	CTCAG	3 cut(s)	102, 255, 298
BspFNI	CGCG	2 cut(s)	6, 46
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	4 cut(s)	89, 242, 263, 285
BstF5I	GGATG	1 cut(s)	19
BstFNI	CGCG	2 cut(s)	6, 46
BstHHI	GCGC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	150, 261
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 77, 326
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	2 cut(s)	6, 46
BstV1I	GCAGC	3 cut(s)	2, 225, 358
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	293, 342
Cac8I	GCNNGC	1 cut(s)	318
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	28, 94
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	8 cut(s)	39, 86, 108, 238, 258, 291, 320, 329
CviKI_1	RGCY	8 cut(s)	39, 86, 108, 238, 258, 291, 320, 329
CviQI	GTAC	2 cut(s)	28, 94
DdeI	CTNAG	4 cut(s)	89, 242, 263, 285
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	41, 293
Eco53kI	GAGCTC	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	252, 371
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	2 cut(s)	41, 293
ErhI	CCWWGG	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	1 cut(s)	208
FaiI	YATR	4 cut(s)	135, 168, 200, 206
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	16, 239, 372
FokI	GGATG	1 cut(s)	6
FriOI	GRGCYC	2 cut(s)	41, 293
Fsp4HI	GCNGC	3 cut(s)	16, 239, 372
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	16, 239, 372
GsuI	CTGGAG	1 cut(s)	130
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	352
Hpy188I	TCNGA	3 cut(s)	232, 288, 351
Hpy188III	TCNNGA	4 cut(s)	75, 205, 252, 262
HpyCH4V	TGCA	2 cut(s)	33, 52
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 77, 326
HpyF3I	CTNAG	4 cut(s)	89, 242, 263, 285
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	97
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	36, 325
LpnPI	CCDG	9 cut(s)	19, 68, 76, 94, 168, 237, 275, 281, 360
Lsp1109I	GCAGC	3 cut(s)	2, 225, 358
MaeIII	GTNAC	2 cut(s)	121, 358
MboII	GAAGA	2 cut(s)	182, 245
MhlI	GDGCHC	3 cut(s)	41, 82, 293
MluCI	AATT	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	3 cut(s)	72, 291, 294
MroXI	GAANNNNTTC	1 cut(s)	226
MslI	CAYNNNNRTG	2 cut(s)	128, 203
MspA1I	CMGCKG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	54
MvnI	CGCG	2 cut(s)	6, 46
MwoI	GCNNNNNNNGC	3 cut(s)	12, 77, 326
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	2 cut(s)	121, 358
PaeR7I	CTCGAG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	228
PctI	GAATGC	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	17, 240, 373
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	29, 95
RsaNI	GTAC	2 cut(s)	28, 94
RseI	CAYNNNNRTG	2 cut(s)	128, 203
SacI	GAGCTC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	228
SatI	GCNGC	3 cut(s)	16, 239, 372
SchI	GAGTC	1 cut(s)	181
SduI	GDGCHC	3 cut(s)	41, 82, 293
SetI	ASST	8 cut(s)	41, 95, 99, 110, 240, 260, 322, 331
SfcI	CTRYAG	1 cut(s)	31
Sfr274I	CTCGAG	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	128, 203
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	54
SstI	GAGCTC	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	142
TaqI	TCGA	1 cut(s)	76
TasI	AATT	1 cut(s)	54
TatI	WGTACW	1 cut(s)	27
TscAI	CASTG	2 cut(s)	300, 349
TseFI	GTSAC	2 cut(s)	121, 358
TseI	GCWGC	3 cut(s)	15, 238, 371
Tsp45I	GTSAC	2 cut(s)	121, 358
TspDTI	ATGAA	2 cut(s)	183, 221
TspRI	CASTG	2 cut(s)	300, 349
XhoI	CTCGAG	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.